Wall clock time and date at job start Wed Apr 1 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31805 * 119.12091 * 2 1 4 4 C 1.32322 * 120.81856 * 179.71334 * 3 2 1 5 5 C 1.38631 * 119.09818 * 0.54520 * 4 3 2 6 6 C 1.38571 * 118.39852 * 359.72936 * 5 4 3 7 7 C 1.50704 * 120.44736 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47064 * 125.02114 * 7 6 5 9 9 C 1.50693 * 109.47216 * 180.02562 * 8 7 6 10 10 O 1.21291 * 119.99945 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00385 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.62944 * 354.02853 * 11 9 8 13 13 C 1.52765 * 109.00844 * 233.58123 * 12 11 9 14 14 C 1.53043 * 109.37821 * 305.58766 * 13 12 11 15 15 C 1.53042 * 109.54300 * 61.23987 * 14 13 12 16 16 H 1.09003 * 109.49459 * 58.58242 * 15 14 13 17 17 C 1.52994 * 109.52430 * 178.66596 * 15 14 13 18 18 C 1.46930 * 120.63183 * 174.29770 * 11 9 8 19 19 H 1.09001 * 109.59000 * 246.15546 * 18 11 9 20 20 C 1.52999 * 109.58674 * 6.58728 * 18 11 9 21 21 N 1.46496 * 109.46989 * 292.96327 * 20 18 11 22 22 C 1.36939 * 119.99801 * 185.81957 * 21 20 18 23 23 H 1.08002 * 120.00230 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00119 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00390 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99852 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47350 * 89.99907 * 26 24 22 28 28 H 1.48504 * 109.46843 * 209.99620 * 26 24 22 29 29 H 1.48500 * 109.46847 * 329.99207 * 26 24 22 30 30 N 1.31780 * 119.12041 * 180.26322 * 2 1 3 31 31 H 1.08996 * 109.47359 * 269.73624 * 1 2 3 32 32 H 1.08997 * 109.47107 * 29.73511 * 1 2 3 33 33 H 1.09002 * 109.47083 * 149.73184 * 1 2 3 34 34 H 1.07989 * 120.45388 * 180.27115 * 4 3 2 35 35 H 1.07995 * 120.79823 * 179.75528 * 5 4 3 36 36 H 1.08997 * 109.47158 * 245.02550 * 7 6 5 37 37 H 1.08998 * 109.46985 * 5.02381 * 7 6 5 38 38 H 1.09002 * 109.46799 * 300.00122 * 8 7 6 39 39 H 1.08997 * 109.47378 * 59.99894 * 8 7 6 40 40 H 1.09002 * 109.58587 * 353.41229 * 12 11 9 41 41 H 1.08999 * 109.59110 * 113.84313 * 12 11 9 42 42 H 1.08995 * 109.56931 * 185.54819 * 13 12 11 43 43 H 1.08997 * 109.36005 * 65.49166 * 13 12 11 44 44 H 1.09001 * 109.46079 * 301.21138 * 14 13 12 45 45 H 1.09008 * 109.45676 * 181.26161 * 14 13 12 46 46 H 1.09003 * 109.46838 * 179.85679 * 17 15 14 47 47 H 1.09005 * 109.47070 * 299.85002 * 17 15 14 48 48 H 1.08999 * 109.47456 * 59.85486 * 17 15 14 49 49 H 1.09002 * 109.47002 * 52.96111 * 20 18 11 50 50 H 1.09004 * 109.46982 * 172.95794 * 20 18 11 51 51 H 0.96993 * 120.00238 * 5.81761 * 21 20 18 52 52 H 0.96997 * 120.00109 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1906 0.0057 5 6 4.1809 -0.0002 0.0002 6 6 3.4713 -1.1904 -0.0054 7 6 4.1961 -2.5116 -0.0121 8 6 3.7161 -3.3627 1.1652 9 6 4.4413 -4.6836 1.1589 10 8 5.2611 -4.9212 0.2972 11 7 4.1790 -5.6010 2.1107 12 6 3.2876 -5.2806 3.2339 13 6 4.0108 -5.5834 4.5450 14 6 4.5066 -7.0312 4.5288 15 6 5.4943 -7.2211 3.3754 16 1 6.3299 -6.5314 3.4946 17 6 6.0151 -8.6597 3.3798 18 6 4.7835 -6.9387 2.0481 19 1 4.0053 -7.6842 1.8845 20 6 5.7965 -6.9906 0.9026 21 7 5.0933 -6.8706 -0.3769 22 6 5.7819 -7.0107 -1.5523 23 1 6.8432 -7.2101 -1.5360 24 6 5.1155 -6.8976 -2.7647 25 7 5.7772 -7.0328 -3.8945 26 14 3.2797 -6.5535 -2.7930 27 1 3.0512 -5.0863 -2.8139 28 1 2.6801 -7.1651 -4.0061 29 1 2.6483 -7.1357 -1.5815 30 7 2.1484 -1.1512 -0.0053 31 1 -0.3634 -0.0047 1.0276 32 1 -0.3633 0.8923 -0.5097 33 1 -0.3633 -0.8876 -0.5180 34 1 3.9906 2.1374 0.0101 35 1 5.2609 -0.0002 0.0006 36 1 3.9902 -3.0343 -0.9462 37 1 5.2684 -2.3382 0.0783 38 1 3.9221 -2.8399 2.0992 39 1 2.6438 -3.5361 1.0749 40 1 3.0226 -4.2238 3.2000 41 1 2.3850 -5.8881 3.1690 42 1 3.3254 -5.4428 5.3808 43 1 4.8603 -4.9091 4.6532 44 1 3.6592 -7.7038 4.3959 45 1 5.0032 -7.2555 5.4729 46 1 6.7165 -8.7948 2.5564 47 1 6.5207 -8.8602 4.3244 48 1 5.1791 -9.3492 3.2617 49 1 6.5048 -6.1685 1.0064 50 1 6.3332 -7.9388 0.9349 51 1 4.1401 -6.6920 -0.3916 52 1 5.3116 -6.9533 -4.7417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667386803.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:41 Heat of formation + Delta-G solvation = 31.313087 kcal Electronic energy + Delta-G solvation = -31936.417897 eV Core-core repulsion = 27936.647617 eV Total energy + Delta-G solvation = -3999.770281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.14609 -41.59447 -38.67430 -36.81868 -35.92470 -34.79521 -34.39599 -33.77860 -32.45683 -32.28065 -29.53360 -28.87339 -27.12691 -26.88943 -25.34525 -24.15999 -23.67754 -22.83915 -22.24013 -21.17229 -20.10504 -19.48869 -18.60738 -17.90840 -17.12621 -16.83657 -16.73401 -16.45616 -16.20179 -16.11138 -15.90043 -15.62002 -15.15388 -15.02980 -14.76706 -14.55794 -14.26190 -14.13648 -13.93701 -13.74256 -13.59766 -13.56306 -13.45864 -13.22564 -13.14085 -13.08113 -12.92697 -12.74903 -12.46888 -12.30943 -12.16636 -11.92583 -11.85243 -11.82524 -11.65649 -11.58272 -11.48440 -11.10862 -10.93643 -10.39053 -10.26100 -9.87414 -9.53795 -8.84216 -7.96333 -5.17192 -0.12364 0.04435 1.26111 1.32744 1.37307 1.91428 2.10549 2.49116 2.69112 2.89439 3.11376 3.36453 3.41148 3.60281 3.68693 3.79684 3.93558 4.01231 4.06168 4.08330 4.13012 4.21345 4.22517 4.30267 4.34099 4.44603 4.53038 4.57218 4.58108 4.65372 4.69303 4.78794 4.81409 4.84666 4.88088 4.94416 4.97413 5.02602 5.04998 5.05218 5.13145 5.25256 5.28430 5.31788 5.41398 5.46635 5.54967 5.78815 5.82927 6.02135 6.26973 6.63355 7.08608 7.16129 7.52160 7.95798 8.13731 9.27422 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.004212 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.375618 B = 6645.924817 C = 8947.365947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.302 3.698 3 N -0.541 5.541 4 C 0.154 3.846 5 C -0.230 4.230 6 C 0.172 3.828 7 C -0.053 4.053 8 C -0.111 4.111 9 C 0.464 3.536 10 O -0.506 6.506 11 N -0.617 5.617 12 C 0.103 3.897 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.090 4.090 16 H 0.065 0.935 17 C -0.146 4.146 18 C 0.149 3.851 19 H 0.064 0.936 20 C 0.170 3.830 21 N -0.719 5.719 22 C -0.190 4.190 23 H 0.049 0.951 24 C -0.070 4.070 25 N -0.993 5.993 26 Si 0.950 3.050 27 H -0.290 1.290 28 H -0.296 1.296 29 H -0.263 1.263 30 N -0.541 5.541 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.206 0.794 35 H 0.171 0.829 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.024 0.976 50 H 0.022 0.978 51 H 0.356 0.644 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 12.755 23.128 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.035 3.965 3 N -0.256 5.256 4 C -0.012 4.012 5 C -0.252 4.252 6 C 0.027 3.973 7 C -0.092 4.092 8 C -0.151 4.151 9 C 0.251 3.749 10 O -0.379 6.379 11 N -0.353 5.353 12 C -0.019 4.019 13 C -0.166 4.166 14 C -0.146 4.146 15 C -0.110 4.110 16 H 0.083 0.917 17 C -0.203 4.203 18 C 0.045 3.955 19 H 0.082 0.918 20 C 0.044 3.956 21 N -0.363 5.363 22 C -0.322 4.322 23 H 0.067 0.933 24 C -0.260 4.260 25 N -0.647 5.647 26 Si 0.780 3.220 27 H -0.217 1.217 28 H -0.223 1.223 29 H -0.188 1.188 30 N -0.257 5.257 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.222 0.778 35 H 0.188 0.812 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.042 0.958 50 H 0.040 0.960 51 H 0.189 0.811 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.607 12.590 22.544 27.550 hybrid contribution 0.309 0.010 -1.140 1.181 sum -9.298 12.599 21.404 26.521 Atomic orbital electron populations 1.20654 0.83863 1.04572 1.04967 1.23858 0.99531 0.83166 0.89958 1.68336 1.11169 1.30302 1.15797 1.23857 0.89236 0.99809 0.88248 1.23060 1.04293 0.93431 1.04396 1.21744 0.89731 0.96164 0.89685 1.20241 0.99624 0.90272 0.99042 1.21444 1.01374 0.92509 0.99760 1.21146 0.85254 0.86962 0.81529 1.91184 1.33344 1.76651 1.36709 1.48086 1.48958 1.12537 1.25747 1.21871 0.92405 1.02463 0.85132 1.21830 1.01033 0.96846 0.96884 1.21565 0.98509 0.96960 0.97521 1.21406 0.98261 0.98008 0.93351 0.91655 1.21839 1.01225 0.94986 1.02289 1.21428 0.94738 0.83893 0.95445 0.91833 1.20887 0.94329 0.96764 0.83612 1.42557 1.06497 1.85553 1.01659 1.18958 0.92776 1.35689 0.84733 0.93336 1.25214 1.01489 1.04465 0.94831 1.69872 1.36435 1.61350 0.97039 0.85461 0.82418 0.77453 0.76675 1.21736 1.22332 1.18817 1.68083 1.10155 1.31491 1.15932 0.87973 0.88669 0.89782 0.77755 0.81190 0.92475 0.88755 0.86906 0.88448 0.88525 0.90898 0.88074 0.91913 0.91271 0.89839 0.93817 0.90453 0.92175 0.95798 0.96049 0.81132 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.32 71.24 0.74 -0.65 16 2 C 0.30 7.30 7.64 138.75 1.06 8.36 16 3 N -0.54 -12.35 10.33 -187.83 -1.94 -14.29 16 4 C 0.15 2.85 11.31 84.71 0.96 3.81 16 5 C -0.23 -4.76 9.80 22.44 0.22 -4.54 16 6 C 0.17 4.60 6.20 42.56 0.26 4.86 16 7 C -0.05 -1.62 4.94 29.85 0.15 -1.47 16 8 C -0.11 -2.94 3.99 29.85 0.12 -2.82 16 9 C 0.46 15.78 6.96 87.66 0.61 16.39 16 10 O -0.51 -22.95 9.64 -3.06 -0.03 -22.98 16 11 N -0.62 -17.27 2.98 -795.84 -2.37 -19.64 16 12 C 0.10 1.82 6.30 86.22 0.54 2.37 16 13 C -0.13 -1.72 6.07 30.53 0.19 -1.53 16 14 C -0.11 -1.65 5.17 30.62 0.16 -1.49 16 15 C -0.09 -2.03 2.34 -10.72 -0.03 -2.06 16 16 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 17 C -0.15 -3.11 8.97 71.98 0.65 -2.47 16 18 C 0.15 4.57 2.42 44.97 0.11 4.68 16 19 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 20 C 0.17 7.21 4.76 86.38 0.41 7.62 16 21 N -0.72 -37.37 2.95 -343.46 -1.01 -38.38 16 22 C -0.19 -11.90 10.17 84.03 0.85 -11.05 16 23 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 24 C -0.07 -4.53 5.50 84.86 0.47 -4.07 16 25 N -0.99 -68.63 13.97 21.65 0.30 -68.33 16 26 Si 0.95 51.31 27.74 68.60 1.90 53.21 16 27 H -0.29 -15.71 7.11 99.48 0.71 -15.00 16 28 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 29 H -0.26 -13.06 6.52 99.48 0.65 -12.41 16 30 N -0.54 -15.07 9.94 -176.02 -1.75 -16.82 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.21 2.04 8.06 -2.92 -0.02 2.02 16 35 H 0.17 2.65 8.01 -2.91 -0.02 2.62 16 36 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 37 H 0.09 2.76 7.90 -2.39 -0.02 2.74 16 38 H 0.11 2.26 7.44 -2.39 -0.02 2.24 16 39 H 0.10 2.55 7.97 -2.39 -0.02 2.53 16 40 H 0.10 1.41 5.96 -2.39 -0.01 1.39 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.04 1.12 6.47 -2.39 -0.02 1.11 16 47 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.02 1.13 6.50 -2.39 -0.02 1.11 16 50 H 0.02 0.93 6.34 -2.38 -0.02 0.92 16 51 H 0.36 18.26 4.67 -92.71 -0.43 17.82 16 52 H 0.25 16.65 8.31 -92.71 -0.77 15.88 16 Total: -1.00 -85.94 402.63 2.98 -82.96 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.42 Total: 28.34 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 7.46 Total: 15.93 kcal Atomic # 7 Polarization: -150.69 SS G_CDS: -6.77 Total: -157.46 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.03 Total: -22.98 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 1.90 Total: 53.21 kcal Total: -85.94 2.98 -82.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667386803.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.269 kcal (2) G-P(sol) polarization free energy of solvation -85.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds