Wall clock time and date at job start Wed Apr 1 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46970 * 2 1 4 4 N 1.30452 * 125.99120 * 269.95675 * 3 2 1 5 5 N 1.39928 * 108.89818 * 180.02562 * 4 3 2 6 6 H 0.97005 * 125.75355 * 180.02562 * 5 4 3 7 7 C 1.34261 * 108.49636 * 359.74924 * 5 4 3 8 8 C 1.38052 * 107.41047 * 0.39776 * 7 5 4 9 9 C 1.47429 * 126.41171 * 179.86767 * 8 7 5 10 10 O 1.21609 * 119.99991 * 139.70928 * 9 8 7 11 11 N 1.34777 * 119.99975 * 319.71467 * 9 8 7 12 12 C 1.46924 * 120.63397 * 354.50553 * 11 9 8 13 13 C 1.53186 * 108.77902 * 233.58894 * 12 11 9 14 14 C 1.53046 * 109.31043 * 305.36578 * 13 12 11 15 15 C 1.53034 * 109.53988 * 61.36330 * 14 13 12 16 16 H 1.09005 * 109.52276 * 58.60046 * 15 14 13 17 17 C 1.53001 * 109.49708 * 178.68130 * 15 14 13 18 18 H 1.09002 * 110.63932 * 62.98206 * 17 15 14 19 19 C 1.55150 * 110.72234 * 299.84061 * 17 15 14 20 20 C 1.54907 * 101.58025 * 206.13414 * 19 17 15 21 21 N 1.47427 * 104.83453 * 37.00862 * 20 19 17 22 22 C 1.36932 * 125.64989 * 155.90674 * 21 20 19 23 23 H 1.08002 * 120.00437 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00008 * 359.97438 * 22 21 20 25 25 N 1.31621 * 120.00317 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99871 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47372 * 60.00271 * 26 24 22 28 28 H 1.48509 * 109.46737 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47221 * 299.99817 * 26 24 22 30 30 C 1.47017 * 108.70151 * 335.87381 * 21 20 19 31 31 C 1.46924 * 120.62841 * 174.48391 * 11 9 8 32 32 H 1.09000 * 109.47148 * 59.99960 * 1 2 3 33 33 H 1.08996 * 109.47319 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47198 * 299.99892 * 1 2 3 35 35 H 1.09002 * 109.46897 * 240.00402 * 2 1 3 36 36 H 1.09000 * 109.47148 * 120.00040 * 2 1 3 37 37 H 1.07998 * 126.29799 * 180.23952 * 7 5 4 38 38 H 1.09006 * 109.58267 * 353.37571 * 12 11 9 39 39 H 1.09006 * 109.58539 * 113.79716 * 12 11 9 40 40 H 1.09002 * 109.49842 * 65.31215 * 13 12 11 41 41 H 1.08995 * 109.49833 * 185.41161 * 13 12 11 42 42 H 1.09001 * 109.45580 * 301.33783 * 14 13 12 43 43 H 1.09006 * 109.45517 * 181.38542 * 14 13 12 44 44 H 1.09005 * 111.00299 * 324.20709 * 19 17 15 45 45 H 1.08999 * 111.01018 * 88.02078 * 19 17 15 46 46 H 1.09001 * 110.36518 * 155.84505 * 20 19 17 47 47 H 1.08995 * 110.36688 * 278.16602 * 20 19 17 48 48 H 0.96997 * 120.00409 * 180.02562 * 25 24 22 49 49 H 1.09004 * 109.87887 * 241.64325 * 30 21 20 50 50 H 1.09000 * 109.88735 * 120.47739 * 30 21 20 51 51 H 1.08994 * 109.58756 * 6.62499 * 31 11 9 52 52 H 1.09003 * 109.58783 * 246.19987 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1434 -1.0555 5 7 2.7346 3.4042 -0.6442 6 1 2.9925 4.1331 -1.2301 7 6 2.7397 3.4373 0.6980 8 6 2.3088 2.2037 1.1432 9 6 2.1591 1.7839 2.5485 10 8 1.2028 1.1115 2.8837 11 7 3.0820 2.1453 3.4618 12 6 4.3024 2.8539 3.0529 13 6 5.5182 2.0922 3.5897 14 6 5.3739 1.9103 5.1025 15 6 4.1182 1.0883 5.4017 16 1 4.1893 0.1206 4.9051 17 6 3.9928 0.8791 6.9122 18 1 3.8658 1.8336 7.4230 19 6 5.2276 0.1203 7.4657 20 6 4.6353 -0.5613 8.7243 21 7 3.2666 -0.9476 8.3356 22 6 2.5282 -1.9503 8.9050 23 1 1.5301 -2.1559 8.5474 24 6 3.0626 -2.7028 9.9419 25 7 4.2792 -2.4528 10.3775 26 14 2.0554 -4.0713 10.7182 27 1 1.7103 -5.0797 9.6841 28 1 2.8470 -4.7185 11.7952 29 1 0.8088 -3.5040 11.2920 30 6 2.8256 -0.0773 7.2358 31 6 2.8865 1.8387 4.8853 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8901 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.0302 4.2742 1.3158 38 1 4.3511 2.8997 1.9649 39 1 4.2935 3.8638 3.4632 40 1 5.5764 1.1152 3.1098 41 1 6.4252 2.6576 3.3761 42 1 5.2910 2.8869 5.5793 43 1 6.2496 1.3900 5.4907 44 1 5.5833 -0.6215 6.7505 45 1 6.0243 0.8139 7.7347 46 1 5.2182 -1.4440 8.9876 47 1 4.6091 0.1397 9.5585 48 1 4.6527 -2.9788 11.1018 49 1 1.9514 0.4960 7.5445 50 1 2.5860 -0.6796 6.3596 51 1 2.0011 1.2148 5.0065 52 1 2.7622 2.7657 5.4451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961190672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:38:45 Heat of formation + Delta-G solvation = 52.966064 kcal Electronic energy + Delta-G solvation = -31363.754119 eV Core-core repulsion = 27364.922782 eV Total energy + Delta-G solvation = -3998.831337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -41.82615 -39.91872 -38.09739 -36.60892 -34.47273 -33.67504 -32.21992 -31.41569 -30.55353 -30.36539 -28.92086 -27.03099 -25.69879 -24.58041 -24.24782 -22.85802 -22.70961 -21.01093 -20.08511 -19.91555 -19.38496 -19.31498 -17.86716 -16.92060 -16.72203 -15.87966 -15.53697 -15.12579 -15.06919 -14.62799 -14.46872 -14.29611 -14.20421 -13.88118 -13.75174 -13.43667 -13.32268 -12.99785 -12.81945 -12.54389 -12.44940 -12.17401 -11.77647 -11.63717 -11.52096 -11.41980 -11.17813 -11.03862 -10.92349 -10.87674 -10.79075 -10.69667 -10.61947 -10.06951 -10.05004 -9.85695 -9.83083 -9.69645 -9.67132 -9.39115 -9.04237 -8.58586 -8.55432 -6.73333 -5.57096 -2.97886 1.24269 1.95811 2.33632 2.88310 3.17470 3.46548 3.50110 3.51802 4.15478 4.29889 4.54578 4.61151 4.69226 4.78445 4.82941 4.94023 5.03330 5.14768 5.16938 5.26352 5.27370 5.32146 5.44618 5.48411 5.53821 5.59247 5.67467 5.71655 5.75653 5.84409 5.86570 5.94789 5.97249 6.01613 6.08282 6.12872 6.13667 6.25822 6.34466 6.39544 6.50315 6.57313 6.69257 6.72910 6.73763 6.87863 7.09011 7.20944 7.40752 7.60394 7.72091 7.94013 8.21626 8.45361 9.31350 9.92548 10.58155 11.46851 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002577 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.122359 B =10864.112352 C =12271.638489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C 0.134 3.866 4 N -0.297 5.297 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.097 3.903 8 C -0.275 4.275 9 C 0.591 3.409 10 O -0.530 6.530 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.134 4.134 14 C -0.114 4.114 15 C -0.086 4.086 16 H 0.075 0.925 17 C -0.092 4.092 18 H 0.069 0.931 19 C -0.136 4.136 20 C 0.151 3.849 21 N -0.605 5.605 22 C -0.219 4.219 23 H 0.076 0.924 24 C -0.014 4.014 25 N -0.925 5.925 26 Si 0.913 3.087 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.140 3.860 31 C 0.118 3.882 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.186 0.814 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.104 0.896 47 H 0.009 0.991 48 H 0.251 0.749 49 H 0.018 0.982 50 H 0.024 0.976 51 H 0.097 0.903 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 16.152 -22.077 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.034 4.034 4 N -0.119 5.119 5 N -0.169 5.169 6 H 0.287 0.713 7 C -0.055 4.055 8 C -0.291 4.291 9 C 0.379 3.621 10 O -0.406 6.406 11 N -0.341 5.341 12 C -0.021 4.021 13 C -0.173 4.173 14 C -0.151 4.151 15 C -0.106 4.106 16 H 0.093 0.907 17 C -0.112 4.112 18 H 0.088 0.912 19 C -0.174 4.174 20 C 0.027 3.973 21 N -0.331 5.331 22 C -0.347 4.347 23 H 0.094 0.906 24 C -0.209 4.209 25 N -0.574 5.574 26 Si 0.744 3.256 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.213 1.213 30 C 0.014 3.986 31 C -0.004 4.004 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.122 0.878 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.042 0.958 51 H 0.116 0.884 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.110 15.653 -22.994 27.896 hybrid contribution -0.204 0.034 1.070 1.089 sum 1.906 15.687 -21.925 27.026 Atomic orbital electron populations 1.21671 0.93511 1.02332 1.02545 1.20031 0.97012 0.87833 1.03557 1.22457 0.95156 0.97114 0.88636 1.77156 1.21719 0.90697 1.22349 1.46099 1.52059 1.13347 1.05379 0.71251 1.23149 0.97811 0.99059 0.85521 1.20285 1.18251 0.95826 0.94696 1.17313 0.82119 0.79210 0.83488 1.90799 1.31283 1.38222 1.80284 1.47982 1.20143 1.58135 1.07799 1.21919 0.84398 0.95417 1.00363 1.21920 0.97063 1.01085 0.97195 1.21581 0.98593 1.00354 0.94606 1.21504 0.93790 0.99100 0.96208 0.90671 1.22140 0.97617 0.98661 0.92751 0.91215 1.23019 0.95740 0.98431 1.00241 1.21911 0.86166 0.98797 0.90459 1.44506 1.13947 1.36657 1.37973 1.19063 0.96829 1.06741 1.12075 0.90595 1.24770 0.96987 1.00047 0.99051 1.69797 1.14858 1.42438 1.30304 0.86165 0.78928 0.81811 0.78700 1.21185 1.21644 1.21264 1.21339 0.94156 0.91469 0.91590 1.21763 0.99904 1.00107 0.78646 0.93040 0.91847 0.91165 0.90384 0.89373 0.79712 0.89828 0.91517 0.91480 0.90995 0.91948 0.91101 0.92325 0.92650 0.87807 0.97291 0.93825 0.96376 0.95800 0.88424 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 37.16 0.37 -1.14 16 2 C -0.04 -0.49 6.00 -27.88 -0.17 -0.66 16 3 C 0.13 1.53 6.51 -82.02 -0.53 1.00 16 4 N -0.30 -3.12 12.63 33.90 0.43 -2.69 16 5 N -0.46 -3.14 7.29 30.85 0.22 -2.91 16 6 H 0.44 1.32 8.96 -182.72 -1.64 -0.32 16 7 C 0.10 0.67 9.63 -16.56 -0.16 0.51 16 8 C -0.28 -2.99 5.22 -105.06 -0.55 -3.54 16 9 C 0.59 7.86 7.34 -12.52 -0.09 7.76 16 10 O -0.53 -9.00 15.44 5.27 0.08 -8.91 16 11 N -0.61 -6.97 2.97 -174.03 -0.52 -7.49 16 12 C 0.10 0.81 5.47 -3.71 -0.02 0.79 16 13 C -0.13 -1.16 6.08 -26.61 -0.16 -1.32 16 14 C -0.11 -1.22 4.97 -26.69 -0.13 -1.35 16 15 C -0.09 -1.18 1.74 -90.50 -0.16 -1.34 16 16 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 17 C -0.09 -1.56 2.49 -88.79 -0.22 -1.78 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.14 -2.53 5.38 -24.59 -0.13 -2.66 16 20 C 0.15 3.74 5.89 -2.53 -0.01 3.73 16 21 N -0.60 -16.00 3.39 -170.08 -0.58 -16.58 16 22 C -0.22 -6.31 10.27 -15.06 -0.15 -6.46 16 23 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 24 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 25 N -0.92 -27.55 10.09 55.49 0.56 -26.99 16 26 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 C 0.14 3.02 6.10 -3.07 -0.02 3.00 16 31 C 0.12 1.55 5.48 -3.71 -0.02 1.53 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.88 7.65 -51.92 -0.40 0.49 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.05 7.80 -51.93 -0.41 0.64 16 37 H 0.19 0.62 7.32 -52.49 -0.38 0.24 16 38 H 0.08 0.56 4.79 -51.93 -0.25 0.31 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.80 7.20 -51.93 -0.37 0.42 16 44 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 45 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 46 H 0.10 2.89 5.87 -51.93 -0.31 2.58 16 47 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.02 0.53 7.77 -51.93 -0.40 0.13 16 51 H 0.10 1.55 6.54 -51.93 -0.34 1.21 16 52 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -35.15 400.46 -11.00 -46.15 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -9.95 Total: -1.85 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.26 Total: -2.43 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.12 Total: -56.65 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.15 -11.00 -46.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961190672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.120 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds