Wall clock time and date at job start Wed Apr 1 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46970 * 2 1 4 4 N 1.30452 * 125.99120 * 269.95675 * 3 2 1 5 5 N 1.39928 * 108.89818 * 180.02562 * 4 3 2 6 6 H 0.97005 * 125.75355 * 180.02562 * 5 4 3 7 7 C 1.34261 * 108.49636 * 359.74924 * 5 4 3 8 8 C 1.38052 * 107.41047 * 0.39776 * 7 5 4 9 9 C 1.47429 * 126.41171 * 179.86767 * 8 7 5 10 10 O 1.21609 * 119.99991 * 139.70928 * 9 8 7 11 11 N 1.34777 * 119.99975 * 319.71467 * 9 8 7 12 12 C 1.46924 * 120.63397 * 354.50553 * 11 9 8 13 13 C 1.53186 * 108.77902 * 233.58894 * 12 11 9 14 14 C 1.53046 * 109.31043 * 305.36578 * 13 12 11 15 15 C 1.53034 * 109.53988 * 61.36330 * 14 13 12 16 16 H 1.09005 * 109.52276 * 58.60046 * 15 14 13 17 17 C 1.53001 * 109.49708 * 178.68130 * 15 14 13 18 18 H 1.09002 * 110.63932 * 62.98206 * 17 15 14 19 19 C 1.55150 * 110.72234 * 299.84061 * 17 15 14 20 20 C 1.54907 * 101.58025 * 206.13414 * 19 17 15 21 21 N 1.47427 * 104.83453 * 37.00862 * 20 19 17 22 22 C 1.36932 * 125.64989 * 155.90674 * 21 20 19 23 23 H 1.08002 * 120.00437 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00008 * 359.97438 * 22 21 20 25 25 N 1.31621 * 120.00317 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99871 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47372 * 60.00271 * 26 24 22 28 28 H 1.48509 * 109.46737 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47221 * 299.99817 * 26 24 22 30 30 C 1.47017 * 108.70151 * 335.87381 * 21 20 19 31 31 C 1.46924 * 120.62841 * 174.48391 * 11 9 8 32 32 H 1.09000 * 109.47148 * 59.99960 * 1 2 3 33 33 H 1.08996 * 109.47319 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47198 * 299.99892 * 1 2 3 35 35 H 1.09002 * 109.46897 * 240.00402 * 2 1 3 36 36 H 1.09000 * 109.47148 * 120.00040 * 2 1 3 37 37 H 1.07998 * 126.29799 * 180.23952 * 7 5 4 38 38 H 1.09006 * 109.58267 * 353.37571 * 12 11 9 39 39 H 1.09006 * 109.58539 * 113.79716 * 12 11 9 40 40 H 1.09002 * 109.49842 * 65.31215 * 13 12 11 41 41 H 1.08995 * 109.49833 * 185.41161 * 13 12 11 42 42 H 1.09001 * 109.45580 * 301.33783 * 14 13 12 43 43 H 1.09006 * 109.45517 * 181.38542 * 14 13 12 44 44 H 1.09005 * 111.00299 * 324.20709 * 19 17 15 45 45 H 1.08999 * 111.01018 * 88.02078 * 19 17 15 46 46 H 1.09001 * 110.36518 * 155.84505 * 20 19 17 47 47 H 1.08995 * 110.36688 * 278.16602 * 20 19 17 48 48 H 0.96997 * 120.00409 * 180.02562 * 25 24 22 49 49 H 1.09004 * 109.87887 * 241.64325 * 30 21 20 50 50 H 1.09000 * 109.88735 * 120.47739 * 30 21 20 51 51 H 1.08994 * 109.58756 * 6.62499 * 31 11 9 52 52 H 1.09003 * 109.58783 * 246.19987 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1434 -1.0555 5 7 2.7346 3.4042 -0.6442 6 1 2.9925 4.1331 -1.2301 7 6 2.7397 3.4373 0.6980 8 6 2.3088 2.2037 1.1432 9 6 2.1591 1.7839 2.5485 10 8 1.2028 1.1115 2.8837 11 7 3.0820 2.1453 3.4618 12 6 4.3024 2.8539 3.0529 13 6 5.5182 2.0922 3.5897 14 6 5.3739 1.9103 5.1025 15 6 4.1182 1.0883 5.4017 16 1 4.1893 0.1206 4.9051 17 6 3.9928 0.8791 6.9122 18 1 3.8658 1.8336 7.4230 19 6 5.2276 0.1203 7.4657 20 6 4.6353 -0.5613 8.7243 21 7 3.2666 -0.9476 8.3356 22 6 2.5282 -1.9503 8.9050 23 1 1.5301 -2.1559 8.5474 24 6 3.0626 -2.7028 9.9419 25 7 4.2792 -2.4528 10.3775 26 14 2.0554 -4.0713 10.7182 27 1 1.7103 -5.0797 9.6841 28 1 2.8470 -4.7185 11.7952 29 1 0.8088 -3.5040 11.2920 30 6 2.8256 -0.0773 7.2358 31 6 2.8865 1.8387 4.8853 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8901 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.0302 4.2742 1.3158 38 1 4.3511 2.8997 1.9649 39 1 4.2935 3.8638 3.4632 40 1 5.5764 1.1152 3.1098 41 1 6.4252 2.6576 3.3761 42 1 5.2910 2.8869 5.5793 43 1 6.2496 1.3900 5.4907 44 1 5.5833 -0.6215 6.7505 45 1 6.0243 0.8139 7.7347 46 1 5.2182 -1.4440 8.9876 47 1 4.6091 0.1397 9.5585 48 1 4.6527 -2.9788 11.1018 49 1 1.9514 0.4960 7.5445 50 1 2.5860 -0.6796 6.3596 51 1 2.0011 1.2148 5.0065 52 1 2.7622 2.7657 5.4451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961190672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:38:43 Heat of formation + Delta-G solvation = 30.023470 kcal Electronic energy + Delta-G solvation = -31364.748985 eV Core-core repulsion = 27364.922782 eV Total energy + Delta-G solvation = -3999.826203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.54054 -40.89816 -39.46818 -37.89836 -35.35808 -35.10170 -33.62819 -32.51388 -31.50613 -31.30216 -30.58239 -28.57665 -26.79324 -26.26307 -25.07656 -23.90514 -23.64599 -22.05356 -21.64989 -21.01756 -20.70080 -20.12044 -18.90605 -18.56255 -17.74928 -16.94597 -16.77466 -16.40592 -16.15039 -15.86291 -15.61341 -15.49376 -15.16405 -15.03157 -14.94509 -14.46132 -14.24235 -14.15890 -13.93322 -13.74985 -13.67215 -13.37451 -13.34983 -13.18943 -12.91410 -12.70936 -12.46896 -12.25378 -12.22855 -12.10968 -12.07174 -11.87503 -11.78825 -11.70220 -11.62317 -11.34457 -11.26412 -11.03793 -10.84055 -10.72741 -10.52155 -9.80777 -9.46726 -8.87661 -7.77726 -5.21872 0.62132 1.11915 1.43981 1.47790 1.54195 1.76508 2.03204 2.31058 2.49063 3.30464 3.41995 3.65503 3.69562 3.75016 3.85413 3.97526 4.01858 4.12884 4.17274 4.24125 4.32746 4.36910 4.40778 4.47362 4.49008 4.53168 4.61453 4.65157 4.69193 4.72253 4.84318 4.89138 4.94398 4.96740 5.00549 5.05291 5.10101 5.13274 5.19671 5.23824 5.29506 5.39384 5.41254 5.44498 5.47172 5.58788 5.65323 5.70899 5.84063 6.28947 6.32555 6.46883 6.59410 7.11934 7.28280 7.79723 8.43554 9.23685 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002577 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.122359 B =10864.112352 C =12271.638489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 C 0.118 3.882 4 N -0.319 5.319 5 N -0.445 5.445 6 H 0.462 0.538 7 C 0.132 3.868 8 C -0.311 4.311 9 C 0.586 3.414 10 O -0.583 6.583 11 N -0.604 5.604 12 C 0.098 3.902 13 C -0.130 4.130 14 C -0.110 4.110 15 C -0.075 4.075 16 H 0.046 0.954 17 C -0.075 4.075 18 H 0.088 0.912 19 C -0.117 4.117 20 C 0.151 3.849 21 N -0.629 5.629 22 C -0.243 4.243 23 H 0.073 0.927 24 C -0.066 4.066 25 N -0.948 5.948 26 Si 0.980 3.020 27 H -0.279 1.279 28 H -0.288 1.288 29 H -0.278 1.278 30 C 0.137 3.863 31 C 0.122 3.878 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.232 0.768 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.069 0.931 47 H -0.012 1.012 48 H 0.248 0.752 49 H 0.014 0.986 50 H 0.010 0.990 51 H 0.059 0.941 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 19.415 -23.826 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C -0.050 4.050 4 N -0.142 5.142 5 N -0.151 5.151 6 H 0.311 0.689 7 C -0.022 4.022 8 C -0.326 4.326 9 C 0.376 3.624 10 O -0.464 6.464 11 N -0.336 5.336 12 C -0.023 4.023 13 C -0.168 4.168 14 C -0.147 4.147 15 C -0.094 4.094 16 H 0.065 0.935 17 C -0.094 4.094 18 H 0.107 0.893 19 C -0.155 4.155 20 C 0.026 3.974 21 N -0.355 5.355 22 C -0.373 4.373 23 H 0.091 0.909 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.807 3.193 27 H -0.205 1.205 28 H -0.214 1.214 29 H -0.205 1.205 30 C 0.012 3.988 31 C -0.001 4.001 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.248 0.752 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.087 0.913 47 H 0.006 0.994 48 H 0.057 0.943 49 H 0.032 0.968 50 H 0.028 0.972 51 H 0.078 0.922 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.673 18.963 -24.800 31.434 hybrid contribution -0.681 -0.947 1.594 1.975 sum 2.992 18.015 -23.206 29.530 Atomic orbital electron populations 1.21588 0.93603 1.02593 1.01529 1.19975 0.96964 0.88510 1.03072 1.22473 0.95810 0.97322 0.89357 1.77091 1.22586 0.92160 1.22332 1.46124 1.50411 1.12706 1.05864 0.68932 1.23671 0.94549 0.98383 0.85549 1.20175 1.21475 0.97803 0.93101 1.17733 0.81612 0.78437 0.84624 1.90769 1.33591 1.40737 1.81256 1.48041 1.21042 1.57832 1.06641 1.22265 0.82043 0.96358 1.01680 1.21910 0.98855 1.00860 0.95194 1.21569 0.96049 1.00515 0.96578 1.21340 0.96213 0.98719 0.93174 0.93541 1.22055 0.94215 0.97778 0.95366 0.89334 1.22837 0.96972 0.98671 0.97036 1.21754 0.85531 0.97365 0.92751 1.44853 1.14771 1.36981 1.38868 1.19403 0.97239 1.07914 1.12701 0.90934 1.25623 0.98220 1.02383 0.99642 1.70054 1.16100 1.43183 1.30414 0.85137 0.77562 0.78854 0.77698 1.20504 1.21415 1.20459 1.21495 0.96175 0.91590 0.89580 1.21557 0.97959 1.00222 0.80362 0.92256 0.91011 0.93710 0.89123 0.91444 0.75166 0.88139 0.87989 0.93450 0.87679 0.89731 0.91398 0.92668 0.89132 0.91324 0.99403 0.94251 0.96769 0.97229 0.92240 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.89 71.98 0.71 -2.31 16 2 C -0.05 -1.04 6.00 29.85 0.18 -0.87 16 3 C 0.12 2.63 6.51 43.51 0.28 2.91 16 4 N -0.32 -6.13 12.63 -46.67 -0.59 -6.72 16 5 N -0.44 -4.40 7.29 -56.31 -0.41 -4.81 16 6 H 0.46 0.77 8.96 -213.43 -1.91 -1.15 16 7 C 0.13 1.30 9.63 84.28 0.81 2.12 16 8 C -0.31 -6.30 5.22 -20.15 -0.11 -6.41 16 9 C 0.59 15.56 7.34 86.66 0.64 16.20 16 10 O -0.58 -21.15 15.44 -4.06 -0.06 -21.21 16 11 N -0.60 -12.84 2.97 -822.77 -2.45 -15.28 16 12 C 0.10 1.11 5.47 86.36 0.47 1.58 16 13 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 14 C -0.11 -1.95 4.97 30.62 0.15 -1.80 16 15 C -0.07 -1.97 1.74 -10.72 -0.02 -1.99 16 16 H 0.05 1.50 8.06 -2.38 -0.02 1.48 16 17 C -0.07 -2.48 2.49 -9.61 -0.02 -2.51 16 18 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 19 C -0.12 -4.29 5.38 31.98 0.17 -4.12 16 20 C 0.15 7.69 5.89 86.85 0.51 8.20 16 21 N -0.63 -34.63 3.39 -692.00 -2.35 -36.98 16 22 C -0.24 -14.62 10.27 84.03 0.86 -13.75 16 23 H 0.07 4.26 7.83 -2.91 -0.02 4.23 16 24 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 25 N -0.95 -58.36 10.09 21.65 0.22 -58.14 16 26 Si 0.98 47.76 29.55 68.60 2.03 49.79 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 30 C 0.14 6.12 6.10 86.73 0.53 6.65 16 31 C 0.12 3.12 5.48 86.36 0.47 3.59 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.22 7.65 -2.38 -0.02 1.20 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.77 7.80 -2.39 -0.02 1.75 16 37 H 0.23 0.04 7.32 -2.91 -0.02 0.02 16 38 H 0.10 0.83 4.79 -2.38 -0.01 0.82 16 39 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.29 7.20 -2.38 -0.02 1.27 16 44 H 0.05 2.06 8.05 -2.38 -0.02 2.05 16 45 H 0.09 2.72 8.08 -2.39 -0.02 2.70 16 46 H 0.07 3.99 5.87 -2.39 -0.01 3.98 16 47 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 48 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 49 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.01 0.46 7.77 -2.39 -0.02 0.44 16 51 H 0.06 1.99 6.54 -2.39 -0.02 1.98 16 52 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -83.90 400.46 1.70 -82.21 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -0.99 Total: 8.67 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.30 Total: 2.48 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -5.58 Total: -121.93 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.06 Total: -21.21 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -83.90 1.70 -82.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961190672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.229 kcal (2) G-P(sol) polarization free energy of solvation -83.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds