Wall clock time and date at job start Wed Apr 1 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47098 * 2 1 4 4 C 1.53003 * 109.47443 * 239.99731 * 2 1 3 5 5 C 1.50705 * 109.46861 * 119.99761 * 2 1 3 6 6 N 1.31816 * 119.13585 * 0.02562 * 5 2 1 7 7 C 1.32210 * 120.58214 * 180.26614 * 6 5 2 8 8 C 1.38949 * 119.23195 * 359.97438 * 7 6 5 9 9 C 1.37767 * 118.63888 * 359.56613 * 8 7 6 10 10 N 1.31584 * 119.12982 * 179.97438 * 5 2 1 11 11 C 1.50405 * 122.89762 * 180.75361 * 9 8 7 12 12 C 1.52850 * 110.75052 * 340.07734 * 11 9 8 13 13 N 1.47227 * 108.06492 * 47.22302 * 12 11 9 14 14 C 1.34776 * 121.29994 * 115.84479 * 13 12 11 15 15 O 1.21277 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99828 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.46953 * 40.00155 * 16 14 13 18 18 N 1.46899 * 109.47101 * 160.00322 * 16 14 13 19 19 C 1.52997 * 109.47238 * 280.00543 * 16 14 13 20 20 C 1.53001 * 109.47049 * 174.99770 * 19 16 14 21 21 C 1.50703 * 109.47033 * 179.97438 * 20 19 16 22 22 H 1.07998 * 120.00117 * 0.02562 * 21 20 19 23 23 C 1.37870 * 119.99962 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00182 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46709 * 90.00129 * 25 23 21 27 27 H 1.48499 * 109.47362 * 210.00066 * 25 23 21 28 28 H 1.48491 * 109.46806 * 330.00339 * 25 23 21 29 29 C 1.46786 * 117.39284 * 296.12038 * 13 12 11 30 30 H 1.08999 * 109.47621 * 300.00361 * 1 2 3 31 31 H 1.08998 * 109.47349 * 60.00156 * 1 2 3 32 32 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46805 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47313 * 299.99875 * 3 2 1 35 35 H 1.09000 * 109.47646 * 59.99979 * 3 2 1 36 36 H 1.09000 * 109.47051 * 300.00455 * 4 2 1 37 37 H 1.08998 * 109.46755 * 59.99750 * 4 2 1 38 38 H 1.09000 * 109.47060 * 180.02562 * 4 2 1 39 39 H 1.07997 * 120.38376 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.22148 * 219.74897 * 11 9 8 41 41 H 1.09006 * 109.22124 * 100.40786 * 11 9 8 42 42 H 1.08993 * 109.74281 * 287.58033 * 12 11 9 43 43 H 1.09000 * 109.74141 * 166.86355 * 12 11 9 44 44 H 1.00903 * 110.99644 * 296.04622 * 18 16 14 45 45 H 1.00897 * 110.99782 * 60.00139 * 18 16 14 46 46 H 1.08998 * 109.46934 * 294.99769 * 19 16 14 47 47 H 1.08998 * 109.47192 * 54.99616 * 19 16 14 48 48 H 1.08998 * 109.47252 * 299.99805 * 20 19 16 49 49 H 1.08998 * 109.47250 * 59.99881 * 20 19 16 50 50 H 0.97002 * 120.00223 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.47387 * 164.09485 * 29 13 12 52 52 H 1.09000 * 109.46979 * 284.09119 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.1606 -1.2052 2.0867 7 6 1.5696 -1.8292 3.1781 8 6 2.9326 -1.9594 3.4148 9 6 3.8154 -1.4387 2.4942 10 7 3.3294 -0.8212 1.4215 11 6 5.3083 -1.5399 2.6461 12 6 5.6871 -1.8174 4.1007 13 7 4.8303 -2.9076 4.5955 14 6 5.3506 -4.0953 4.9631 15 8 6.5467 -4.2822 4.8900 16 6 4.4462 -5.1909 5.4662 17 1 3.5314 -5.2075 4.8738 18 7 5.1310 -6.4849 5.3460 19 6 4.0989 -4.9320 6.9335 20 6 3.0833 -5.9731 7.4086 21 6 2.7416 -5.7184 8.8541 22 1 3.2024 -4.8961 9.3811 23 6 1.8400 -6.5346 9.5034 24 7 1.2784 -7.5357 8.8616 25 14 1.4170 -6.2195 11.2955 26 1 0.2582 -5.2942 11.3751 27 1 1.0711 -7.5039 11.9558 28 1 2.5852 -5.6099 11.9799 29 6 3.3865 -2.6525 4.6670 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 0.8527 -2.2338 3.8772 40 1 5.7656 -0.6028 2.3287 41 1 5.6788 -2.3500 2.0179 42 1 5.5263 -0.9216 4.7003 43 1 6.7336 -2.1167 4.1579 44 1 5.3137 -6.7089 4.3792 45 1 5.9829 -6.4948 5.8867 46 1 5.0026 -5.0034 7.5388 47 1 3.6714 -3.9345 7.0352 48 1 2.1796 -5.9017 6.8033 49 1 3.5108 -6.9705 7.3069 50 1 0.6443 -8.1102 9.3185 51 1 2.8550 -3.5985 4.7708 52 1 3.1717 -2.0188 5.5275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602529008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:41 Heat of formation + Delta-G solvation = -6.080858 kcal Electronic energy + Delta-G solvation = -30920.559284 eV Core-core repulsion = 26919.167480 eV Total energy + Delta-G solvation = -4001.391804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.79866 -40.12192 -37.73057 -36.23576 -35.39775 -34.45422 -32.86078 -31.94359 -31.50238 -30.14858 -27.61164 -27.58935 -27.01489 -26.25671 -25.03551 -23.68571 -23.53656 -22.05934 -20.44356 -19.77689 -19.03558 -18.00679 -17.10428 -16.69814 -16.31802 -16.25796 -15.71757 -15.48371 -15.18352 -14.69161 -14.60197 -14.43554 -14.27581 -14.10092 -14.00028 -13.86378 -13.51513 -13.15313 -12.77971 -12.51161 -12.49720 -12.43982 -12.34985 -12.05501 -11.93157 -11.89263 -11.79046 -11.54456 -11.28423 -11.19650 -11.00962 -10.92246 -10.73346 -10.64878 -10.58623 -10.18581 -9.85836 -9.43227 -9.41637 -9.38906 -9.04891 -8.87685 -8.41260 -8.26297 -5.97534 -3.99980 0.61948 0.81649 2.61228 2.77412 3.31878 3.39012 3.41943 3.42051 3.47404 3.80563 4.13173 4.34063 4.43004 4.47825 4.54131 4.65996 4.67472 4.72313 4.81143 4.87972 4.93838 5.08911 5.11937 5.28837 5.32432 5.33008 5.38155 5.39736 5.46013 5.50540 5.52344 5.56249 5.58943 5.63342 5.65931 5.70906 5.74207 5.83260 5.97380 6.12758 6.19661 6.19951 6.35040 6.58491 6.76935 6.99927 7.19838 7.41194 7.70586 7.72656 7.87773 7.90795 8.08206 8.11670 8.43771 9.07915 9.63616 11.13254 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.002554 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.636878 B =10958.739092 C =12339.517228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.001 3.999 3 C -0.135 4.135 4 C -0.135 4.135 5 C 0.325 3.675 6 N -0.511 5.511 7 C 0.162 3.838 8 C -0.205 4.205 9 C 0.189 3.811 10 N -0.515 5.515 11 C -0.086 4.086 12 C 0.109 3.891 13 N -0.614 5.614 14 C 0.492 3.508 15 O -0.548 6.548 16 C 0.077 3.923 17 H 0.098 0.902 18 N -0.806 5.806 19 C -0.096 4.096 20 C 0.032 3.968 21 C -0.523 4.523 22 H 0.052 0.948 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.888 3.112 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.275 1.275 29 C 0.155 3.845 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.176 0.824 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.334 0.666 45 H 0.349 0.651 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.013 0.987 49 H 0.035 0.965 50 H 0.260 0.740 51 H 0.111 0.889 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 16.821 -19.106 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.001 4.001 3 C -0.193 4.193 4 C -0.193 4.193 5 C 0.058 3.942 6 N -0.224 5.224 7 C -0.006 4.006 8 C -0.210 4.210 9 C 0.045 3.955 10 N -0.228 5.228 11 C -0.124 4.124 12 C -0.014 4.014 13 N -0.349 5.349 14 C 0.280 3.720 15 O -0.425 6.425 16 C -0.038 4.038 17 H 0.115 0.885 18 N -0.334 5.334 19 C -0.135 4.135 20 C -0.005 4.005 21 C -0.561 4.561 22 H 0.070 0.930 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.716 3.284 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.200 1.200 29 C 0.031 3.969 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.193 0.807 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.146 0.854 45 H 0.163 0.837 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.031 0.969 49 H 0.054 0.946 50 H 0.069 0.931 51 H 0.129 0.871 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.070 16.674 -19.573 25.795 hybrid contribution 0.662 0.317 1.367 1.552 sum 2.732 16.991 -18.205 25.052 Atomic orbital electron populations 1.21714 0.92317 1.02829 1.01746 1.19376 0.96516 0.94791 0.89426 1.21831 1.01975 0.93456 1.02013 1.21837 1.01986 0.99969 0.95545 1.23019 0.84838 0.91815 0.94555 1.68327 1.39675 1.10827 1.03547 1.23304 0.93324 0.90767 0.93176 1.21343 0.96031 1.03757 0.99862 1.21125 0.96779 0.89310 0.88322 1.68139 1.16381 1.17087 1.21241 1.20760 0.89018 1.04315 0.98325 1.21604 0.97162 0.90303 0.92361 1.48210 1.07119 1.13841 1.65686 1.22783 0.90245 0.83374 0.75644 1.90644 1.16176 1.80784 1.54910 1.21914 0.95654 0.85464 1.00812 0.88450 1.59005 1.31434 1.27608 1.15336 1.21689 1.01385 1.01135 0.89243 1.19012 0.92259 0.94272 0.94969 1.21252 1.24524 1.13528 0.96804 0.92984 1.24982 0.96252 0.95177 0.97847 1.69967 1.29312 1.17320 1.36508 0.86663 0.78646 0.77553 0.85529 1.20756 1.21253 1.19985 1.20398 0.81079 1.01709 0.93750 0.91936 0.92398 0.91889 0.91543 0.91608 0.92786 0.92749 0.91596 0.91543 0.80685 0.88186 0.88907 0.90674 0.87777 0.85426 0.83712 0.92685 0.92748 0.96907 0.94644 0.93058 0.87070 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 7.67 37.15 0.28 -0.77 16 2 C 0.00 0.01 0.92 -155.66 -0.14 -0.13 16 3 C -0.13 -1.04 8.37 37.16 0.31 -0.73 16 4 C -0.14 -1.09 8.37 37.16 0.31 -0.78 16 5 C 0.33 3.70 6.25 -157.35 -0.98 2.71 16 6 N -0.51 -5.98 9.03 -10.70 -0.10 -6.07 16 7 C 0.16 1.72 10.94 -17.13 -0.19 1.53 16 8 C -0.21 -2.21 5.81 -104.80 -0.61 -2.81 16 9 C 0.19 2.11 6.65 -82.41 -0.55 1.56 16 10 N -0.51 -5.99 9.68 -7.18 -0.07 -6.06 16 11 C -0.09 -0.81 6.13 -28.10 -0.17 -0.98 16 12 C 0.11 1.12 6.43 -3.72 -0.02 1.09 16 13 N -0.61 -7.50 2.94 -174.65 -0.51 -8.01 16 14 C 0.49 7.39 6.96 -10.98 -0.08 7.31 16 15 O -0.55 -9.55 15.73 5.56 0.09 -9.47 16 16 C 0.08 1.23 2.33 -68.86 -0.16 1.07 16 17 H 0.10 1.47 6.44 -51.93 -0.33 1.13 16 18 N -0.81 -13.12 8.44 -5.65 -0.05 -13.16 16 19 C -0.10 -1.83 4.69 -26.73 -0.13 -1.96 16 20 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 21 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 22 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 25 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 29 C 0.15 1.66 5.31 -5.30 -0.03 1.63 16 30 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.57 8.01 -51.93 -0.42 0.16 16 39 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 1.15 7.07 -51.93 -0.37 0.78 16 44 H 0.33 4.75 9.06 -39.29 -0.36 4.39 16 45 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.96 7.37 -51.93 -0.38 0.57 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 50 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.11 1.22 5.65 -51.93 -0.29 0.92 16 52 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 413.93 15.07 6.24 6.24 Total: -1.00 -32.72 413.93 -10.14 -42.86 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.76 Total: 6.64 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.70 Total: -3.66 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.01 Total: -58.90 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.72 -10.14 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.774 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds