Wall clock time and date at job start Wed Apr 1 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47098 * 2 1 4 4 C 1.53003 * 109.47443 * 239.99731 * 2 1 3 5 5 C 1.50705 * 109.46861 * 119.99761 * 2 1 3 6 6 N 1.31816 * 119.13585 * 0.02562 * 5 2 1 7 7 C 1.32210 * 120.58214 * 180.26614 * 6 5 2 8 8 C 1.38949 * 119.23195 * 359.97438 * 7 6 5 9 9 C 1.37767 * 118.63888 * 359.56613 * 8 7 6 10 10 N 1.31584 * 119.12982 * 179.97438 * 5 2 1 11 11 C 1.50405 * 122.89762 * 180.75361 * 9 8 7 12 12 C 1.52850 * 110.75052 * 340.07734 * 11 9 8 13 13 N 1.47227 * 108.06492 * 47.22302 * 12 11 9 14 14 C 1.34776 * 121.29994 * 115.84479 * 13 12 11 15 15 O 1.21277 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99828 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.46953 * 40.00155 * 16 14 13 18 18 N 1.46899 * 109.47101 * 160.00322 * 16 14 13 19 19 C 1.52997 * 109.47238 * 280.00543 * 16 14 13 20 20 C 1.53001 * 109.47049 * 174.99770 * 19 16 14 21 21 C 1.50703 * 109.47033 * 179.97438 * 20 19 16 22 22 H 1.07998 * 120.00117 * 0.02562 * 21 20 19 23 23 C 1.37870 * 119.99962 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00182 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46709 * 90.00129 * 25 23 21 27 27 H 1.48499 * 109.47362 * 210.00066 * 25 23 21 28 28 H 1.48491 * 109.46806 * 330.00339 * 25 23 21 29 29 C 1.46786 * 117.39284 * 296.12038 * 13 12 11 30 30 H 1.08999 * 109.47621 * 300.00361 * 1 2 3 31 31 H 1.08998 * 109.47349 * 60.00156 * 1 2 3 32 32 H 1.09000 * 109.47369 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46805 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47313 * 299.99875 * 3 2 1 35 35 H 1.09000 * 109.47646 * 59.99979 * 3 2 1 36 36 H 1.09000 * 109.47051 * 300.00455 * 4 2 1 37 37 H 1.08998 * 109.46755 * 59.99750 * 4 2 1 38 38 H 1.09000 * 109.47060 * 180.02562 * 4 2 1 39 39 H 1.07997 * 120.38376 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.22148 * 219.74897 * 11 9 8 41 41 H 1.09006 * 109.22124 * 100.40786 * 11 9 8 42 42 H 1.08993 * 109.74281 * 287.58033 * 12 11 9 43 43 H 1.09000 * 109.74141 * 166.86355 * 12 11 9 44 44 H 1.00903 * 110.99644 * 296.04622 * 18 16 14 45 45 H 1.00897 * 110.99782 * 60.00139 * 18 16 14 46 46 H 1.08998 * 109.46934 * 294.99769 * 19 16 14 47 47 H 1.08998 * 109.47192 * 54.99616 * 19 16 14 48 48 H 1.08998 * 109.47252 * 299.99805 * 20 19 16 49 49 H 1.08998 * 109.47250 * 59.99881 * 20 19 16 50 50 H 0.97002 * 120.00223 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.47387 * 164.09485 * 29 13 12 52 52 H 1.09000 * 109.46979 * 284.09119 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.1606 -1.2052 2.0867 7 6 1.5696 -1.8292 3.1781 8 6 2.9326 -1.9594 3.4148 9 6 3.8154 -1.4387 2.4942 10 7 3.3294 -0.8212 1.4215 11 6 5.3083 -1.5399 2.6461 12 6 5.6871 -1.8174 4.1007 13 7 4.8303 -2.9076 4.5955 14 6 5.3506 -4.0953 4.9631 15 8 6.5467 -4.2822 4.8900 16 6 4.4462 -5.1909 5.4662 17 1 3.5314 -5.2075 4.8738 18 7 5.1310 -6.4849 5.3460 19 6 4.0989 -4.9320 6.9335 20 6 3.0833 -5.9731 7.4086 21 6 2.7416 -5.7184 8.8541 22 1 3.2024 -4.8961 9.3811 23 6 1.8400 -6.5346 9.5034 24 7 1.2784 -7.5357 8.8616 25 14 1.4170 -6.2195 11.2955 26 1 0.2582 -5.2942 11.3751 27 1 1.0711 -7.5039 11.9558 28 1 2.5852 -5.6099 11.9799 29 6 3.3865 -2.6525 4.6670 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 0.8527 -2.2338 3.8772 40 1 5.7656 -0.6028 2.3287 41 1 5.6788 -2.3500 2.0179 42 1 5.5263 -0.9216 4.7003 43 1 6.7336 -2.1167 4.1579 44 1 5.3137 -6.7089 4.3792 45 1 5.9829 -6.4948 5.8867 46 1 5.0026 -5.0034 7.5388 47 1 3.6714 -3.9345 7.0352 48 1 2.1796 -5.9017 6.8033 49 1 3.5108 -6.9705 7.3069 50 1 0.6443 -8.1102 9.3185 51 1 2.8550 -3.5985 4.7708 52 1 3.1717 -2.0188 5.5275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602529008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:40 Heat of formation + Delta-G solvation = -26.706573 kcal Electronic energy + Delta-G solvation = -30921.453682 eV Core-core repulsion = 26919.167480 eV Total energy + Delta-G solvation = -4002.286202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.64391 -41.23936 -38.60726 -37.11204 -36.84193 -35.35014 -34.79998 -32.83251 -32.37795 -31.91145 -28.42204 -28.22336 -28.19932 -27.38944 -26.18849 -25.02909 -24.38592 -23.20964 -21.95643 -20.72318 -19.96224 -19.10119 -18.32551 -18.06600 -17.64110 -17.12608 -16.87182 -16.63475 -16.41932 -16.14545 -15.58863 -15.43200 -15.24167 -15.02796 -14.85755 -14.83264 -14.54344 -14.25380 -14.19180 -13.77515 -13.59056 -13.43550 -13.28950 -13.11390 -13.03646 -12.78770 -12.65273 -12.57743 -12.54442 -12.50097 -12.23054 -11.96058 -11.85372 -11.84064 -11.70123 -11.62361 -11.47102 -11.22299 -10.98767 -10.46588 -10.25919 -10.24649 -9.86255 -9.64569 -8.11619 -6.21183 -0.21339 -0.01781 1.40641 1.43667 1.44925 1.54920 1.76735 2.46127 2.59439 2.71695 3.02404 3.22018 3.28439 3.42217 3.49302 3.63898 3.71539 3.89449 3.99842 4.00508 4.02133 4.03244 4.13882 4.28160 4.34866 4.37813 4.52593 4.59000 4.65543 4.73432 4.75842 4.78519 4.81838 4.86460 4.86760 4.94852 4.98089 5.00237 5.04908 5.17876 5.25554 5.27915 5.34711 5.42259 5.48538 5.60400 5.87124 5.93461 6.01365 6.04596 6.22199 6.32800 6.48732 6.95303 6.97810 7.04431 7.47027 8.99430 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.002554 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.636878 B =10958.739092 C =12339.517228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.004 4.004 3 C -0.129 4.129 4 C -0.130 4.130 5 C 0.314 3.686 6 N -0.526 5.526 7 C 0.157 3.843 8 C -0.207 4.207 9 C 0.178 3.822 10 N -0.524 5.524 11 C -0.077 4.077 12 C 0.110 3.890 13 N -0.608 5.608 14 C 0.497 3.503 15 O -0.574 6.574 16 C 0.084 3.916 17 H 0.108 0.892 18 N -0.819 5.819 19 C -0.081 4.081 20 C 0.040 3.960 21 C -0.539 4.539 22 H 0.056 0.944 23 C 0.003 3.997 24 N -0.930 5.930 25 Si 0.955 3.045 26 H -0.271 1.271 27 H -0.287 1.287 28 H -0.267 1.267 29 C 0.155 3.845 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.195 0.805 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.345 0.655 45 H 0.346 0.654 46 H 0.043 0.957 47 H 0.072 0.928 48 H -0.003 1.003 49 H 0.004 0.996 50 H 0.261 0.739 51 H 0.109 0.891 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 18.799 -19.349 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.006 4.006 3 C -0.187 4.187 4 C -0.188 4.188 5 C 0.047 3.953 6 N -0.239 5.239 7 C -0.010 4.010 8 C -0.212 4.212 9 C 0.034 3.966 10 N -0.238 5.238 11 C -0.115 4.115 12 C -0.013 4.013 13 N -0.341 5.341 14 C 0.284 3.716 15 O -0.453 6.453 16 C -0.032 4.032 17 H 0.125 0.875 18 N -0.347 5.347 19 C -0.119 4.119 20 C 0.003 3.997 21 C -0.577 4.577 22 H 0.075 0.925 23 C -0.195 4.195 24 N -0.570 5.570 25 Si 0.781 3.219 26 H -0.196 1.196 27 H -0.212 1.212 28 H -0.192 1.192 29 C 0.031 3.969 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.212 0.788 40 H 0.136 0.864 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.015 0.985 49 H 0.022 0.978 50 H 0.070 0.930 51 H 0.127 0.873 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.840 18.690 -19.834 27.315 hybrid contribution 0.705 -0.287 1.391 1.586 sum 2.545 18.403 -18.443 26.178 Atomic orbital electron populations 1.21664 0.91814 1.02198 1.02337 1.19547 0.96915 0.95321 0.88782 1.21789 1.01463 0.92692 1.02716 1.21800 1.01406 0.99536 0.96060 1.23553 0.84883 0.91701 0.95211 1.68390 1.40017 1.11447 1.04070 1.23675 0.93795 0.90316 0.93229 1.21314 0.96121 1.03937 0.99816 1.21422 0.97568 0.89254 0.88379 1.68190 1.16581 1.17542 1.21494 1.20708 0.88161 1.05011 0.97612 1.21746 0.96416 0.90053 0.93078 1.48198 1.08086 1.13352 1.64451 1.22340 0.89471 0.83850 0.75914 1.90638 1.17009 1.81324 1.56362 1.21702 0.96434 0.86051 0.98971 0.87463 1.58990 1.31417 1.28078 1.16262 1.21405 0.99275 1.00226 0.91041 1.18817 0.92727 0.94268 0.93870 1.21710 1.24279 1.13465 0.98268 0.92540 1.25851 0.96286 0.94964 1.02372 1.70098 1.30107 1.18391 1.38402 0.85596 0.78763 0.77481 0.80085 1.19620 1.21246 1.19171 1.20489 0.80011 1.01942 0.94417 0.92809 0.90290 0.93096 0.92240 0.89490 0.93469 0.93841 0.89399 0.92346 0.78796 0.86383 0.89454 0.88792 0.88402 0.84160 0.83978 0.93845 0.90979 0.98453 0.97797 0.93017 0.87299 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 7.67 71.98 0.55 -1.30 16 2 C 0.00 -0.06 0.92 -52.93 -0.05 -0.11 16 3 C -0.13 -1.78 8.37 71.98 0.60 -1.17 16 4 C -0.13 -1.92 8.37 71.98 0.60 -1.32 16 5 C 0.31 6.87 6.25 138.81 0.87 7.74 16 6 N -0.53 -11.92 9.03 -187.77 -1.69 -13.61 16 7 C 0.16 3.16 10.94 84.81 0.93 4.09 16 8 C -0.21 -4.17 5.81 -19.98 -0.12 -4.29 16 9 C 0.18 3.74 6.65 42.18 0.28 4.02 16 10 N -0.52 -11.67 9.68 -176.64 -1.71 -13.38 16 11 C -0.08 -1.32 6.13 29.71 0.18 -1.14 16 12 C 0.11 2.04 6.43 86.19 0.55 2.60 16 13 N -0.61 -13.91 2.94 -824.86 -2.43 -16.34 16 14 C 0.50 14.45 6.96 87.66 0.61 15.06 16 15 O -0.57 -19.65 15.73 -3.02 -0.05 -19.69 16 16 C 0.08 2.64 2.33 44.17 0.10 2.75 16 17 H 0.11 3.16 6.44 -2.39 -0.02 3.15 16 18 N -0.82 -26.80 8.44 -171.80 -1.45 -28.25 16 19 C -0.08 -3.06 4.69 30.59 0.14 -2.92 16 20 C 0.04 2.00 4.86 29.85 0.15 2.15 16 21 C -0.54 -29.48 9.11 25.60 0.23 -29.24 16 22 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 23 C 0.00 0.17 5.46 84.65 0.46 0.64 16 24 N -0.93 -55.53 13.29 21.44 0.28 -55.24 16 25 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 C 0.16 3.06 5.31 85.41 0.45 3.52 16 30 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.88 8.04 -2.39 -0.02 0.87 16 33 H 0.06 0.90 8.01 -2.39 -0.02 0.88 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.95 8.01 -2.39 -0.02 0.93 16 39 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 2.01 7.07 -2.39 -0.02 2.00 16 44 H 0.35 9.80 9.06 -89.69 -0.81 8.98 16 45 H 0.35 11.56 8.58 -89.70 -0.77 10.80 16 46 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.07 2.44 7.37 -2.39 -0.02 2.42 16 48 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 50 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 51 H 0.11 2.23 5.65 -2.39 -0.01 2.21 16 52 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -70.16 413.93 0.88 -69.28 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.65 Total: 30.69 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.55 Total: 1.06 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -7.00 Total: -126.83 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.16 0.88 -69.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.570 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds