Wall clock time and date at job start Wed Apr 1 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 C 1.52999 * 109.46937 * 119.99563 * 2 1 3 5 5 C 1.53007 * 109.46961 * 172.69336 * 4 2 1 6 6 H 1.09000 * 109.78154 * 42.91580 * 5 4 2 7 7 C 1.53237 * 109.62974 * 163.40064 * 5 4 2 8 8 N 1.46893 * 109.33835 * 173.54017 * 7 5 4 9 9 C 1.46903 * 110.99865 * 172.74837 * 8 7 5 10 10 C 1.46902 * 111.26969 * 296.89472 * 8 7 5 11 11 C 1.52778 * 109.42073 * 62.96776 * 10 8 7 12 12 N 1.47074 * 109.62742 * 282.43254 * 5 4 2 13 13 C 1.34774 * 120.88148 * 9.10608 * 12 5 4 14 14 O 1.21571 * 120.00157 * 354.67820 * 13 12 5 15 15 N 1.34778 * 119.99849 * 174.94706 * 13 12 5 16 16 C 1.39247 * 119.99942 * 185.93334 * 15 13 12 17 17 C 1.39682 * 119.57570 * 18.33868 * 16 15 13 18 18 C 1.38648 * 119.49405 * 179.72749 * 17 16 15 19 19 C 1.38357 * 118.67158 * 0.53401 * 18 17 16 20 20 C 1.40578 * 119.12842 * 359.73099 * 19 18 17 21 21 C 1.41336 * 119.78351 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00128 * 0.02562 * 21 20 19 23 23 C 1.40023 * 119.99781 * 180.02562 * 21 20 19 24 24 N 1.30749 * 119.99796 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00171 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46919 * 59.99923 * 25 23 21 27 27 H 1.48494 * 109.47447 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47151 * 300.00380 * 25 23 21 29 29 N 1.31911 * 119.57530 * 198.60844 * 16 15 13 30 30 H 1.09002 * 109.47177 * 300.00037 * 1 2 3 31 31 H 1.08996 * 109.47298 * 60.00550 * 1 2 3 32 32 H 1.09005 * 109.46675 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47466 * 239.99967 * 2 1 3 34 34 H 1.08993 * 109.47337 * 179.97438 * 3 2 1 35 35 H 1.09008 * 109.47043 * 300.00060 * 3 2 1 36 36 H 1.09007 * 109.47250 * 59.99532 * 3 2 1 37 37 H 1.08998 * 109.47315 * 52.69517 * 4 2 1 38 38 H 1.08998 * 109.47018 * 292.69068 * 4 2 1 39 39 H 1.08999 * 109.49203 * 293.50340 * 7 5 4 40 40 H 1.09001 * 109.49241 * 53.57774 * 7 5 4 41 41 H 1.08994 * 109.47219 * 59.99933 * 9 8 7 42 42 H 1.09003 * 109.46940 * 179.97438 * 9 8 7 43 43 H 1.08996 * 109.47024 * 299.99885 * 9 8 7 44 44 H 1.09008 * 109.49169 * 183.06238 * 10 8 7 45 45 H 1.08999 * 109.49290 * 303.11824 * 10 8 7 46 46 H 1.09005 * 109.55630 * 186.60734 * 11 10 8 47 47 H 1.09005 * 109.46105 * 66.18182 * 11 10 8 48 48 H 0.97005 * 120.00051 * 5.94019 * 15 13 12 49 49 H 1.08001 * 120.24955 * 359.97438 * 17 16 15 50 50 H 1.08001 * 120.66711 * 180.26365 * 18 17 16 51 51 H 1.08001 * 120.43516 * 179.70768 * 19 18 17 52 52 H 0.97007 * 119.99334 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5590 -0.8820 1.1610 6 1 4.0071 0.0416 0.7945 7 6 4.1230 -1.2133 2.5467 8 7 5.5551 -1.5181 2.4288 9 6 6.1712 -1.6728 3.7534 10 6 5.7797 -2.7109 1.6013 11 6 5.2825 -2.4450 0.1814 12 7 3.8865 -1.9867 0.2469 13 6 2.9317 -2.5673 -0.5065 14 8 1.7676 -2.2461 -0.3662 15 7 3.2668 -3.5080 -1.4117 16 6 2.3010 -4.0188 -2.2751 17 6 1.1124 -3.3130 -2.4749 18 6 0.1543 -3.8203 -3.3393 19 6 0.4033 -5.0247 -3.9731 20 6 1.6167 -5.6900 -3.7260 21 6 1.8851 -6.9215 -4.3656 22 1 1.1593 -7.3482 -5.0419 23 6 3.0921 -7.5883 -4.1223 24 7 3.9710 -7.0714 -3.3038 25 14 3.4466 -9.2162 -4.9669 26 1 3.4339 -9.0229 -6.4393 27 1 4.7809 -9.7127 -4.5449 28 1 2.4069 -10.2068 -4.5888 29 7 2.5182 -5.1656 -2.8896 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.5739 -1.7041 1.3171 38 1 1.7873 -0.1373 2.1344 39 1 3.9864 -0.3583 3.2089 40 1 3.5995 -2.0776 2.9554 41 1 5.6833 -2.4877 4.2882 42 1 7.2312 -1.8984 3.6370 43 1 6.0561 -0.7475 4.3179 44 1 6.8448 -2.9420 1.5778 45 1 5.2336 -3.5545 2.0234 46 1 5.3394 -3.3634 -0.4031 47 1 5.8995 -1.6746 -0.2812 48 1 4.1807 -3.8292 -1.4617 49 1 0.9426 -2.3772 -1.9631 50 1 -0.7697 -3.2882 -3.5111 51 1 -0.3253 -5.4483 -4.6485 52 1 4.8070 -7.5336 -3.1350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932424893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:50:34 Heat of formation + Delta-G solvation = 58.092831 kcal Electronic energy + Delta-G solvation = -32329.961905 eV Core-core repulsion = 28331.352881 eV Total energy + Delta-G solvation = -3998.609024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.94444 -38.70195 -37.63534 -36.26301 -34.57908 -34.02325 -33.11210 -31.60038 -30.33656 -29.41075 -28.32638 -26.88166 -26.53124 -25.45084 -24.34102 -22.95616 -22.05598 -21.53022 -20.70990 -19.75195 -19.18835 -17.80449 -17.38238 -16.42076 -15.89984 -15.51673 -15.26094 -15.01197 -14.95496 -14.92463 -14.51865 -14.43430 -13.92013 -13.81571 -13.38176 -13.20171 -13.00360 -12.84150 -12.43889 -12.31337 -12.24919 -12.07297 -11.94393 -11.91375 -11.72089 -11.51509 -11.33847 -11.25489 -11.22234 -11.03322 -10.67098 -10.61084 -10.36281 -10.33309 -10.17654 -10.03484 -9.53310 -9.08358 -8.76748 -8.49799 -8.24762 -7.97412 -7.63459 -7.00112 -6.38728 -4.47642 2.69293 2.84105 2.99145 3.08106 3.11237 3.27881 3.63115 3.74475 3.96117 4.17288 4.71159 4.74152 4.82571 4.85631 5.07723 5.08915 5.22170 5.23521 5.29532 5.35694 5.42010 5.48712 5.54664 5.59945 5.60645 5.75066 5.85591 5.90907 5.94667 5.96084 6.12324 6.16473 6.18623 6.23113 6.42482 6.46936 6.47300 6.66685 6.68717 6.75825 6.79641 6.84398 6.89761 7.01675 7.05662 7.11949 7.25415 7.56944 7.64382 7.94900 8.07468 8.21268 8.43539 8.73314 8.92943 9.09925 10.09525 10.33650 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.003483 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.644040 B = 8037.001956 C =10090.771060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.155 4.155 4 C -0.110 4.110 5 C 0.170 3.830 6 H 0.078 0.922 7 C 0.043 3.957 8 N -0.543 5.543 9 C 0.026 3.974 10 C 0.041 3.959 11 C 0.114 3.886 12 N -0.628 5.628 13 C 0.703 3.297 14 O -0.545 6.545 15 N -0.661 5.661 16 C 0.374 3.626 17 C -0.311 4.311 18 C -0.050 4.050 19 C -0.293 4.293 20 C 0.282 3.718 21 C -0.437 4.437 22 H 0.083 0.917 23 C 0.073 3.927 24 N -0.724 5.724 25 Si 0.906 3.094 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.266 1.266 29 N -0.510 5.510 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.399 0.601 49 H 0.137 0.863 50 H 0.096 0.904 51 H 0.097 0.903 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 11.120 11.417 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.212 4.212 4 C -0.148 4.148 5 C 0.066 3.934 6 H 0.096 0.904 7 C -0.085 4.085 8 N -0.267 5.267 9 C -0.122 4.122 10 C -0.088 4.088 11 C -0.010 4.010 12 N -0.367 5.367 13 C 0.406 3.594 14 O -0.422 6.422 15 N -0.310 5.310 16 C 0.139 3.861 17 C -0.336 4.336 18 C -0.074 4.074 19 C -0.316 4.316 20 C 0.155 3.845 21 C -0.469 4.469 22 H 0.102 0.898 23 C -0.152 4.152 24 N -0.346 5.346 25 Si 0.730 3.270 26 H -0.190 1.190 27 H -0.204 1.204 28 H -0.190 1.190 29 N -0.229 5.229 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.237 0.763 49 H 0.154 0.846 50 H 0.114 0.886 51 H 0.116 0.884 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.875 11.282 11.531 17.169 hybrid contribution -0.280 -1.250 -0.040 1.282 sum 5.595 10.032 11.491 16.248 Atomic orbital electron populations 1.21660 0.95678 1.01973 0.99674 1.21279 0.95789 0.93082 0.99727 1.22062 1.00491 0.97894 1.00785 1.22114 0.92275 1.03312 0.97097 1.21296 0.96657 0.88378 0.87020 0.90411 1.22623 0.87335 1.00932 0.97657 1.61941 1.13681 1.36815 1.14268 1.22357 0.99564 1.00800 0.89526 1.22419 1.01437 0.91207 0.93748 1.21633 0.82534 1.00478 0.96373 1.47308 1.07271 1.37590 1.44514 1.15719 0.84764 0.79728 0.79192 1.90874 1.16945 1.64884 1.69496 1.42610 1.12853 1.40292 1.35227 1.18238 0.86918 0.90927 0.89990 1.21679 0.96950 1.05442 1.09558 1.20803 0.96942 0.94964 0.94720 1.21689 1.00844 0.99653 1.09413 1.18136 0.86316 0.92018 0.88029 1.19512 1.01807 1.02748 1.22873 0.89843 1.26012 0.95862 0.98891 0.94407 1.70119 1.05266 1.35034 1.24225 0.86419 0.78181 0.81883 0.80468 1.18995 1.20371 1.19029 1.68012 1.33382 1.08338 1.13160 0.94366 0.93869 0.91818 0.88966 0.93254 0.93410 0.93590 0.87914 0.93554 0.89796 0.94217 0.95674 0.91272 0.91298 0.89461 0.94162 0.89599 0.90603 0.76344 0.84591 0.88551 0.88447 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.03 37.16 0.34 -1.53 16 2 C -0.08 -1.13 1.87 -90.62 -0.17 -1.30 16 3 C -0.15 -1.83 9.01 37.16 0.33 -1.49 16 4 C -0.11 -1.46 3.68 -26.73 -0.10 -1.56 16 5 C 0.17 2.09 3.01 -67.49 -0.20 1.89 16 6 H 0.08 0.95 6.14 -51.93 -0.32 0.63 16 7 C 0.04 0.46 4.85 -3.71 -0.02 0.45 16 8 N -0.54 -5.49 4.88 -242.91 -1.19 -6.68 16 9 C 0.03 0.21 9.58 60.07 0.58 0.78 16 10 C 0.04 0.42 5.60 -3.94 -0.02 0.40 16 11 C 0.11 1.33 6.51 -3.84 -0.02 1.30 16 12 N -0.63 -8.80 3.02 -170.89 -0.52 -9.32 16 13 C 0.70 12.56 7.33 -86.92 -0.64 11.92 16 14 O -0.54 -10.43 5.66 5.30 0.03 -10.40 16 15 N -0.66 -13.25 5.32 -15.79 -0.08 -13.34 16 16 C 0.37 9.16 7.51 -154.99 -1.16 7.99 16 17 C -0.31 -7.43 8.83 -38.89 -0.34 -7.77 16 18 C -0.05 -1.17 10.15 -39.39 -0.40 -1.57 16 19 C -0.29 -7.39 9.83 -38.66 -0.38 -7.77 16 20 C 0.28 7.76 6.55 -85.00 -0.56 7.20 16 21 C -0.44 -11.70 9.14 -37.74 -0.34 -12.05 16 22 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 23 C 0.07 1.83 5.50 -17.34 -0.10 1.73 16 24 N -0.72 -18.74 11.46 55.55 0.64 -18.11 16 25 Si 0.91 18.48 29.56 -169.99 -5.02 13.46 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 27 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 28 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 29 N -0.51 -13.84 7.89 -10.26 -0.08 -13.92 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.03 7.54 -51.93 -0.39 0.64 16 33 H 0.09 1.58 5.43 -51.93 -0.28 1.30 16 34 H 0.05 0.56 6.37 -51.93 -0.33 0.23 16 35 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.10 1.67 5.86 -52.14 -0.31 1.36 16 38 H 0.05 0.54 8.03 -51.93 -0.42 0.12 16 39 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.74 8.06 -51.92 -0.42 0.32 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.03 5.74 -51.93 -0.30 0.73 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.40 7.41 6.36 -40.82 -0.26 7.15 16 49 H 0.14 3.12 5.28 -52.51 -0.28 2.85 16 50 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 51 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 52 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -29.38 393.64 -11.84 -41.22 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.34 Total: 12.52 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.21 Total: -1.37 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -1.23 Total: -61.36 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.03 Total: -10.40 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.38 -11.84 -41.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932424893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.316 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds