Wall clock time and date at job start Wed Apr 1 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 C 1.52999 * 109.46937 * 119.99563 * 2 1 3 5 5 C 1.53007 * 109.46961 * 172.69336 * 4 2 1 6 6 H 1.09000 * 109.78154 * 42.91580 * 5 4 2 7 7 C 1.53237 * 109.62974 * 163.40064 * 5 4 2 8 8 N 1.46893 * 109.33835 * 173.54017 * 7 5 4 9 9 C 1.46903 * 110.99865 * 172.74837 * 8 7 5 10 10 C 1.46902 * 111.26969 * 296.89472 * 8 7 5 11 11 C 1.52778 * 109.42073 * 62.96776 * 10 8 7 12 12 N 1.47074 * 109.62742 * 282.43254 * 5 4 2 13 13 C 1.34774 * 120.88148 * 9.10608 * 12 5 4 14 14 O 1.21571 * 120.00157 * 354.67820 * 13 12 5 15 15 N 1.34778 * 119.99849 * 174.94706 * 13 12 5 16 16 C 1.39247 * 119.99942 * 185.93334 * 15 13 12 17 17 C 1.39682 * 119.57570 * 18.33868 * 16 15 13 18 18 C 1.38648 * 119.49405 * 179.72749 * 17 16 15 19 19 C 1.38357 * 118.67158 * 0.53401 * 18 17 16 20 20 C 1.40578 * 119.12842 * 359.73099 * 19 18 17 21 21 C 1.41336 * 119.78351 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00128 * 0.02562 * 21 20 19 23 23 C 1.40023 * 119.99781 * 180.02562 * 21 20 19 24 24 N 1.30749 * 119.99796 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00171 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46919 * 59.99923 * 25 23 21 27 27 H 1.48494 * 109.47447 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47151 * 300.00380 * 25 23 21 29 29 N 1.31911 * 119.57530 * 198.60844 * 16 15 13 30 30 H 1.09002 * 109.47177 * 300.00037 * 1 2 3 31 31 H 1.08996 * 109.47298 * 60.00550 * 1 2 3 32 32 H 1.09005 * 109.46675 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47466 * 239.99967 * 2 1 3 34 34 H 1.08993 * 109.47337 * 179.97438 * 3 2 1 35 35 H 1.09008 * 109.47043 * 300.00060 * 3 2 1 36 36 H 1.09007 * 109.47250 * 59.99532 * 3 2 1 37 37 H 1.08998 * 109.47315 * 52.69517 * 4 2 1 38 38 H 1.08998 * 109.47018 * 292.69068 * 4 2 1 39 39 H 1.08999 * 109.49203 * 293.50340 * 7 5 4 40 40 H 1.09001 * 109.49241 * 53.57774 * 7 5 4 41 41 H 1.08994 * 109.47219 * 59.99933 * 9 8 7 42 42 H 1.09003 * 109.46940 * 179.97438 * 9 8 7 43 43 H 1.08996 * 109.47024 * 299.99885 * 9 8 7 44 44 H 1.09008 * 109.49169 * 183.06238 * 10 8 7 45 45 H 1.08999 * 109.49290 * 303.11824 * 10 8 7 46 46 H 1.09005 * 109.55630 * 186.60734 * 11 10 8 47 47 H 1.09005 * 109.46105 * 66.18182 * 11 10 8 48 48 H 0.97005 * 120.00051 * 5.94019 * 15 13 12 49 49 H 1.08001 * 120.24955 * 359.97438 * 17 16 15 50 50 H 1.08001 * 120.66711 * 180.26365 * 18 17 16 51 51 H 1.08001 * 120.43516 * 179.70768 * 19 18 17 52 52 H 0.97007 * 119.99334 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5590 -0.8820 1.1610 6 1 4.0071 0.0416 0.7945 7 6 4.1230 -1.2133 2.5467 8 7 5.5551 -1.5181 2.4288 9 6 6.1712 -1.6728 3.7534 10 6 5.7797 -2.7109 1.6013 11 6 5.2825 -2.4450 0.1814 12 7 3.8865 -1.9867 0.2469 13 6 2.9317 -2.5673 -0.5065 14 8 1.7676 -2.2461 -0.3662 15 7 3.2668 -3.5080 -1.4117 16 6 2.3010 -4.0188 -2.2751 17 6 1.1124 -3.3130 -2.4749 18 6 0.1543 -3.8203 -3.3393 19 6 0.4033 -5.0247 -3.9731 20 6 1.6167 -5.6900 -3.7260 21 6 1.8851 -6.9215 -4.3656 22 1 1.1593 -7.3482 -5.0419 23 6 3.0921 -7.5883 -4.1223 24 7 3.9710 -7.0714 -3.3038 25 14 3.4466 -9.2162 -4.9669 26 1 3.4339 -9.0229 -6.4393 27 1 4.7809 -9.7127 -4.5449 28 1 2.4069 -10.2068 -4.5888 29 7 2.5182 -5.1656 -2.8896 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.5739 -1.7041 1.3171 38 1 1.7873 -0.1373 2.1344 39 1 3.9864 -0.3583 3.2089 40 1 3.5995 -2.0776 2.9554 41 1 5.6833 -2.4877 4.2882 42 1 7.2312 -1.8984 3.6370 43 1 6.0561 -0.7475 4.3179 44 1 6.8448 -2.9420 1.5778 45 1 5.2336 -3.5545 2.0234 46 1 5.3394 -3.3634 -0.4031 47 1 5.8995 -1.6746 -0.2812 48 1 4.1807 -3.8292 -1.4617 49 1 0.9426 -2.3772 -1.9631 50 1 -0.7697 -3.2882 -3.5111 51 1 -0.3253 -5.4483 -4.6485 52 1 4.8070 -7.5336 -3.1350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932424893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:50:33 Heat of formation + Delta-G solvation = 41.450666 kcal Electronic energy + Delta-G solvation = -32330.683563 eV Core-core repulsion = 28331.352881 eV Total energy + Delta-G solvation = -3999.330682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.24395 -40.22497 -38.98407 -37.50454 -35.73580 -35.67627 -34.78592 -32.67201 -32.21949 -31.02648 -29.50960 -27.92181 -27.48231 -27.34637 -25.25474 -24.29011 -23.50050 -23.13211 -22.12407 -20.85365 -20.58904 -19.25329 -19.05647 -18.02812 -17.24081 -16.64943 -16.44511 -16.28403 -16.23869 -16.12544 -15.82594 -15.71676 -15.55866 -15.07073 -14.70578 -14.48344 -14.28916 -14.12783 -14.05679 -13.76272 -13.30202 -13.18259 -12.98637 -12.89015 -12.86177 -12.77324 -12.70519 -12.59824 -12.50776 -12.29499 -12.25580 -12.12388 -11.84945 -11.75647 -11.45202 -11.28560 -11.12492 -10.71521 -10.04495 -9.86884 -9.67689 -9.54965 -9.28568 -8.83840 -8.27431 -6.47605 0.87765 1.17045 1.42476 1.52300 1.53805 1.58075 2.18277 2.25155 2.81132 2.87409 2.92858 3.77238 3.81181 3.95864 3.98458 4.11968 4.18493 4.25986 4.27250 4.35843 4.37749 4.52476 4.55584 4.63613 4.64636 4.69563 4.74601 4.80132 4.86049 4.89506 4.91340 4.95654 4.98454 5.01232 5.04045 5.04989 5.15765 5.23898 5.26358 5.34429 5.44066 5.54174 5.63010 5.69660 5.80965 5.82590 5.88422 5.97827 6.01846 6.07088 6.21915 6.34246 6.75174 6.91162 7.02902 7.60328 8.16173 8.47449 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.003483 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.644040 B = 8037.001956 C =10090.771060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.169 3.831 6 H 0.088 0.912 7 C 0.049 3.951 8 N -0.545 5.545 9 C 0.026 3.974 10 C 0.046 3.954 11 C 0.110 3.890 12 N -0.620 5.620 13 C 0.697 3.303 14 O -0.559 6.559 15 N -0.662 5.662 16 C 0.368 3.632 17 C -0.320 4.320 18 C -0.049 4.049 19 C -0.314 4.314 20 C 0.248 3.752 21 C -0.470 4.470 22 H 0.089 0.911 23 C 0.028 3.972 24 N -0.754 5.754 25 Si 0.986 3.014 26 H -0.260 1.260 27 H -0.267 1.267 28 H -0.262 1.262 29 N -0.537 5.537 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.023 0.977 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.404 0.596 49 H 0.144 0.856 50 H 0.126 0.874 51 H 0.109 0.891 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 12.138 12.603 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.141 4.141 5 C 0.067 3.933 6 H 0.106 0.894 7 C -0.080 4.080 8 N -0.269 5.269 9 C -0.122 4.122 10 C -0.083 4.083 11 C -0.013 4.013 12 N -0.358 5.358 13 C 0.400 3.600 14 O -0.437 6.437 15 N -0.312 5.312 16 C 0.131 3.869 17 C -0.344 4.344 18 C -0.073 4.073 19 C -0.337 4.337 20 C 0.122 3.878 21 C -0.502 4.502 22 H 0.107 0.893 23 C -0.194 4.194 24 N -0.376 5.376 25 Si 0.807 3.193 26 H -0.184 1.184 27 H -0.192 1.192 28 H -0.187 1.187 29 N -0.257 5.257 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.129 0.871 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.242 0.758 49 H 0.161 0.839 50 H 0.144 0.856 51 H 0.127 0.873 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.290 12.348 12.764 19.197 hybrid contribution -0.713 -1.446 -0.314 1.643 sum 6.577 10.901 12.450 17.807 Atomic orbital electron populations 1.21606 0.95957 1.00360 1.00617 1.21162 0.95569 0.94460 0.98548 1.21967 1.00813 0.96029 1.01606 1.21946 0.92734 1.01719 0.97654 1.21451 0.96202 0.87995 0.87683 0.89395 1.22570 0.87625 1.01224 0.96532 1.61982 1.13113 1.36376 1.15477 1.22431 1.00004 1.01423 0.88343 1.22388 1.02465 0.90852 0.92587 1.21818 0.81250 1.00606 0.97675 1.47382 1.07540 1.37306 1.43578 1.15895 0.85344 0.79466 0.79293 1.90879 1.17921 1.65068 1.69805 1.42591 1.12353 1.40918 1.35313 1.18566 0.87948 0.90391 0.89957 1.21914 0.97090 1.05741 1.09671 1.21151 0.97910 0.94514 0.93756 1.21851 1.00794 1.00524 1.10536 1.18632 0.87414 0.93003 0.88773 1.19889 1.03176 1.03370 1.23785 0.89317 1.26911 0.95023 1.02572 0.94854 1.70202 1.05748 1.36701 1.24959 0.85210 0.78307 0.76613 0.79218 1.18398 1.19163 1.18662 1.68031 1.34005 1.09520 1.14116 0.92426 0.93850 0.94661 0.92428 0.92631 0.93550 0.91796 0.91238 0.91200 0.87459 0.95816 0.96077 0.90026 0.89925 0.87143 0.95824 0.90350 0.89089 0.75806 0.83908 0.85575 0.87320 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.03 71.98 0.65 -2.93 16 2 C -0.08 -2.17 1.87 -10.79 -0.02 -2.19 16 3 C -0.15 -3.16 9.01 71.98 0.65 -2.51 16 4 C -0.10 -2.64 3.68 30.60 0.11 -2.52 16 5 C 0.17 3.93 3.01 44.96 0.14 4.06 16 6 H 0.09 1.92 6.14 -2.39 -0.01 1.91 16 7 C 0.05 0.95 4.85 86.38 0.42 1.37 16 8 N -0.55 -9.66 4.88 -922.42 -4.51 -14.16 16 9 C 0.03 0.34 9.58 127.69 1.22 1.56 16 10 C 0.05 0.87 5.60 86.23 0.48 1.36 16 11 C 0.11 2.46 6.51 86.19 0.56 3.02 16 12 N -0.62 -17.23 3.02 -812.85 -2.45 -19.68 16 13 C 0.70 25.58 7.33 179.05 1.31 26.89 16 14 O -0.56 -22.16 5.66 -3.94 -0.02 -22.18 16 15 N -0.66 -27.54 5.32 -322.12 -1.71 -29.26 16 16 C 0.37 18.67 7.51 133.26 1.00 19.67 16 17 C -0.32 -15.70 8.83 22.72 0.20 -15.50 16 18 C -0.05 -2.34 10.15 22.40 0.23 -2.11 16 19 C -0.31 -16.32 9.83 22.87 0.22 -16.09 16 20 C 0.25 14.19 6.55 40.19 0.26 14.45 16 21 C -0.47 -25.89 9.14 23.47 0.21 -25.68 16 22 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 23 C 0.03 1.43 5.50 85.29 0.47 1.90 16 24 N -0.75 -39.79 11.46 21.84 0.25 -39.54 16 25 Si 0.99 38.00 29.56 68.60 2.03 40.03 16 26 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 27 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 28 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 29 N -0.54 -30.28 7.89 -186.36 -1.47 -31.75 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.03 1.17 7.54 -2.38 -0.02 1.15 16 33 H 0.06 2.01 5.43 -2.45 -0.01 2.00 16 34 H 0.05 1.12 6.37 -2.39 -0.02 1.10 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 37 H 0.07 2.30 5.86 -5.93 -0.03 2.26 16 38 H 0.07 1.46 8.03 -2.39 -0.02 1.44 16 39 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 40 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.11 1.61 8.06 -2.38 -0.02 1.59 16 45 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.08 1.89 5.74 -2.38 -0.01 1.87 16 47 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 48 H 0.40 15.59 6.36 -92.70 -0.59 15.00 16 49 H 0.14 6.79 5.28 -3.35 -0.02 6.77 16 50 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 51 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 52 H 0.28 13.18 8.29 -92.70 -0.77 12.41 16 Total: -1.00 -66.15 393.64 0.55 -65.59 By element: Atomic # 1 Polarization: 45.90 SS G_CDS: 0.31 Total: 46.21 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 8.13 Total: 4.74 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -9.89 Total: -134.40 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.02 Total: -22.18 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -66.15 0.55 -65.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932424893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.046 kcal (2) G-P(sol) polarization free energy of solvation -66.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds