Wall clock time and date at job start Wed Apr 1 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46643 * 2 1 4 4 C 1.50703 * 109.46975 * 119.99464 * 2 1 3 5 5 N 1.32161 * 120.53755 * 308.38030 * 4 2 1 6 6 C 1.31858 * 120.96362 * 179.97438 * 5 4 2 7 7 N 1.31881 * 122.09615 * 359.97438 * 6 5 4 8 8 C 1.32134 * 120.97117 * 359.71163 * 7 6 5 9 9 C 1.39925 * 120.53458 * 128.36509 * 4 2 1 10 10 C 1.47833 * 120.94095 * 0.02562 * 9 4 2 11 11 O 1.21562 * 119.99595 * 33.61369 * 10 9 4 12 12 N 1.34777 * 120.00404 * 213.60542 * 10 9 4 13 13 C 1.46498 * 120.00057 * 180.02562 * 12 10 9 14 14 H 1.09009 * 109.45758 * 325.02682 * 13 12 10 15 15 C 1.53032 * 109.46222 * 85.00285 * 13 12 10 16 16 C 1.53193 * 109.31198 * 181.37194 * 15 13 12 17 17 N 1.46930 * 108.77799 * 305.36207 * 16 15 13 18 18 C 1.36926 * 120.63235 * 233.58948 * 17 16 15 19 19 H 1.07997 * 120.00001 * 150.20438 * 18 17 16 20 20 C 1.38814 * 120.00300 * 330.19981 * 18 17 16 21 21 N 1.31622 * 119.99685 * 333.54293 * 20 18 17 22 22 Si 1.86801 * 120.00152 * 153.54547 * 20 18 17 23 23 H 1.48498 * 109.47155 * 90.00228 * 22 20 18 24 24 H 1.48496 * 109.46853 * 209.99924 * 22 20 18 25 25 H 1.48501 * 109.47114 * 329.99969 * 22 20 18 26 26 C 1.46923 * 118.73358 * 53.86087 * 17 16 15 27 27 C 1.53042 * 109.44802 * 205.06601 * 13 12 10 28 28 C 1.52995 * 109.49737 * 298.57345 * 27 13 12 29 29 C 1.52997 * 109.49802 * 58.63559 * 27 13 12 30 30 H 1.08999 * 109.47224 * 300.00122 * 1 2 3 31 31 H 1.08998 * 109.47266 * 60.00803 * 1 2 3 32 32 H 1.09005 * 109.46759 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47554 * 240.00210 * 2 1 3 34 34 H 1.08999 * 109.47159 * 299.99611 * 3 2 1 35 35 H 1.08999 * 109.47410 * 59.99992 * 3 2 1 36 36 H 1.09004 * 109.47057 * 180.02562 * 3 2 1 37 37 H 1.07998 * 118.94770 * 180.02562 * 6 5 4 38 38 H 1.07992 * 120.54504 * 180.30908 * 8 7 6 39 39 H 0.96994 * 119.99782 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.50139 * 61.42244 * 15 13 12 41 41 H 1.08997 * 109.52624 * 301.33415 * 15 13 12 42 42 H 1.09007 * 109.58488 * 185.57870 * 16 15 13 43 43 H 1.09000 * 109.59146 * 65.15372 * 16 15 13 44 44 H 0.96995 * 120.00148 * 353.90351 * 21 20 18 45 45 H 1.09002 * 109.58949 * 65.92954 * 26 17 16 46 46 H 1.09004 * 109.59001 * 186.35488 * 26 17 16 47 47 H 1.09000 * 109.47230 * 59.99708 * 28 27 13 48 48 H 1.09002 * 109.47290 * 180.02562 * 28 27 13 49 49 H 1.09004 * 109.46885 * 299.99998 * 28 27 13 50 50 H 1.09004 * 109.47242 * 60.00159 * 29 27 13 51 51 H 1.09005 * 109.47414 * 180.02562 * 29 27 13 52 52 H 1.08996 * 109.47429 * 300.00058 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.5898 -0.3718 2.4290 6 6 2.0232 -0.9879 3.5112 7 7 2.9097 -1.9627 3.4550 8 6 3.4007 -2.3694 2.2976 9 6 2.9745 -1.7391 1.1227 10 6 3.4997 -2.1537 -0.1955 11 8 3.6449 -1.3305 -1.0781 12 7 3.8178 -3.4443 -0.4188 13 6 4.3388 -3.8549 -1.7250 14 1 3.8621 -3.2648 -2.5079 15 6 5.8516 -3.6277 -1.7648 16 6 6.3875 -4.0260 -3.1436 17 7 5.9771 -5.4075 -3.4296 18 6 6.9039 -6.3520 -3.7817 19 1 6.7387 -7.3898 -3.5328 20 6 8.0558 -5.9756 -4.4588 21 7 8.0550 -4.8930 -5.2074 22 14 9.6069 -7.0055 -4.3075 23 1 9.6187 -8.0417 -5.3711 24 1 10.7979 -6.1310 -4.4552 25 1 9.6370 -7.6624 -2.9760 26 6 4.5526 -5.7548 -3.3364 27 6 4.0378 -5.3385 -1.9501 28 6 4.7349 -6.1703 -0.8717 29 6 2.5273 -5.5700 -1.8766 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4427 -0.0005 37 1 1.6393 -0.6852 4.4742 38 1 4.1226 -3.1716 2.2592 39 1 3.7017 -4.1011 0.2854 40 1 6.3313 -4.2364 -0.9984 41 1 6.0669 -2.5752 -1.5811 42 1 7.4756 -3.9603 -3.1456 43 1 5.9777 -3.3587 -3.9018 44 1 7.2287 -4.4076 -5.3574 45 1 3.9960 -5.2256 -4.1099 46 1 4.4293 -6.8301 -3.4656 47 1 4.3700 -5.8707 0.1107 48 1 4.5207 -7.2268 -1.0327 49 1 5.8112 -6.0059 -0.9252 50 1 2.0311 -4.9781 -2.6458 51 1 2.3134 -6.6268 -2.0365 52 1 2.1610 -5.2702 -0.8948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941223181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:07 Heat of formation + Delta-G solvation = 18.512813 kcal Electronic energy + Delta-G solvation = -32094.806172 eV Core-core repulsion = 28094.480830 eV Total energy + Delta-G solvation = -4000.325342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.68049 -40.01125 -38.30252 -36.33075 -34.91091 -33.60500 -33.14676 -32.02887 -31.34162 -29.76719 -27.31841 -27.04726 -26.19503 -25.59388 -25.22604 -24.44302 -22.48257 -21.12135 -20.83555 -20.59266 -18.76073 -18.15693 -17.58552 -17.23892 -16.87727 -16.03446 -15.34585 -14.93707 -14.79744 -14.53805 -14.37976 -14.30297 -14.10660 -13.88648 -13.68668 -13.63463 -13.48526 -13.30848 -12.88511 -12.43860 -12.35578 -12.08210 -11.95002 -11.77126 -11.69972 -11.52189 -11.38188 -11.20235 -11.03918 -10.96096 -10.84062 -10.79486 -10.62666 -10.38478 -10.16377 -10.01291 -9.99226 -9.86248 -9.77939 -9.58547 -9.32761 -8.83889 -8.35692 -6.90499 -6.09611 -3.27180 0.20045 0.67368 2.60892 3.03215 3.42211 3.48023 3.52009 3.65139 3.67117 3.73918 3.97374 4.44873 4.55681 4.56381 4.85175 4.87761 4.95444 4.96114 5.08004 5.10816 5.19823 5.29668 5.45286 5.46674 5.49357 5.64509 5.67051 5.70677 5.71055 5.80519 5.81258 5.90355 5.94448 6.00660 6.06885 6.08664 6.13642 6.19351 6.24870 6.33397 6.37077 6.47086 6.56623 6.63186 6.65910 6.72196 6.81110 7.01853 7.15002 7.43283 7.66678 8.00424 8.09262 8.55563 9.08475 9.81494 10.26886 11.18287 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.002775 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.042521 B =10088.517328 C =10321.068319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.131 4.131 4 C 0.239 3.761 5 N -0.517 5.517 6 C 0.310 3.690 7 N -0.525 5.525 8 C 0.181 3.819 9 C -0.236 4.236 10 C 0.564 3.436 11 O -0.520 6.520 12 N -0.710 5.710 13 C 0.164 3.836 14 H 0.084 0.916 15 C -0.145 4.145 16 C 0.156 3.844 17 N -0.594 5.594 18 C -0.352 4.352 19 H 0.055 0.945 20 C -0.020 4.020 21 N -0.911 5.911 22 Si 1.062 2.938 23 H -0.294 1.294 24 H -0.286 1.286 25 H -0.292 1.292 26 C 0.162 3.838 27 C -0.089 4.089 28 C -0.131 4.131 29 C -0.137 4.137 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.200 0.800 38 H 0.172 0.828 39 H 0.395 0.605 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.019 0.981 44 H 0.270 0.730 45 H 0.018 0.982 46 H 0.060 0.940 47 H 0.033 0.967 48 H 0.051 0.949 49 H 0.076 0.924 50 H 0.052 0.948 51 H 0.055 0.945 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 6.245 15.186 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.189 4.189 4 C 0.092 3.908 5 N -0.230 5.230 6 C 0.023 3.977 7 N -0.239 5.239 8 C 0.014 3.986 9 C -0.243 4.243 10 C 0.348 3.652 11 O -0.398 6.398 12 N -0.361 5.361 13 C 0.061 3.939 14 H 0.102 0.898 15 C -0.185 4.185 16 C 0.029 3.971 17 N -0.317 5.317 18 C -0.481 4.481 19 H 0.072 0.928 20 C -0.223 4.223 21 N -0.550 5.550 22 Si 0.892 3.108 23 H -0.222 1.222 24 H -0.212 1.212 25 H -0.219 1.219 26 C 0.035 3.965 27 C -0.092 4.092 28 C -0.188 4.188 29 C -0.195 4.195 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.217 0.783 38 H 0.189 0.811 39 H 0.231 0.769 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.074 0.926 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.080 6.999 14.999 21.096 hybrid contribution -1.342 -0.619 0.208 1.492 sum -14.422 6.380 15.207 21.908 Atomic orbital electron populations 1.21787 0.93425 1.01829 1.02684 1.20611 0.96562 0.97365 0.93972 1.21664 1.01445 0.93602 1.02210 1.21900 0.87099 0.87932 0.93900 1.68309 1.27153 1.28919 0.98634 1.25201 0.88092 0.86811 0.97596 1.68442 1.11853 1.15066 1.28521 1.23496 0.93687 0.94810 0.86574 1.21761 1.03843 1.02069 0.96656 1.17766 0.78057 0.83088 0.86271 1.90767 1.52982 1.51092 1.44926 1.46277 1.64943 1.08150 1.16711 1.21059 0.94813 0.94915 0.83116 0.89780 1.22520 0.94100 1.00335 1.01589 1.20883 0.99870 0.85519 0.90782 1.44111 1.01044 1.07115 1.79430 1.19885 1.02305 0.90296 1.35640 0.92763 1.25835 1.02288 1.00514 0.93701 1.70747 1.31431 1.20319 1.32468 0.83594 0.76447 0.75183 0.75589 1.22196 1.21221 1.21882 1.20995 0.86238 0.98521 0.90794 1.21439 0.94657 0.93388 0.99673 1.21784 1.02467 0.99148 0.95431 1.21811 0.95318 1.01472 1.00897 0.91569 0.91741 0.93126 0.86487 0.91611 0.92279 0.92378 0.78343 0.81068 0.76930 0.91714 0.92602 0.90313 0.96315 0.91957 0.96418 0.92161 0.94784 0.92946 0.90492 0.92885 0.92559 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.03 37.16 0.34 -0.97 16 2 C -0.07 -0.74 2.74 -91.77 -0.25 -1.00 16 3 C -0.13 -1.37 9.17 37.16 0.34 -1.03 16 4 C 0.24 2.79 5.53 -81.82 -0.45 2.34 16 5 N -0.52 -5.57 9.93 -10.48 -0.10 -5.67 16 6 C 0.31 2.89 12.27 -92.03 -1.13 1.77 16 7 N -0.53 -5.41 10.42 -14.24 -0.15 -5.56 16 8 C 0.18 1.84 10.63 -16.77 -0.18 1.66 16 9 C -0.24 -2.76 5.83 -104.69 -0.61 -3.37 16 10 C 0.56 7.65 7.12 -12.33 -0.09 7.56 16 11 O -0.52 -8.66 13.95 5.31 0.07 -8.58 16 12 N -0.71 -8.95 4.22 -54.71 -0.23 -9.18 16 13 C 0.16 2.57 1.57 -67.89 -0.11 2.46 16 14 H 0.08 1.49 7.58 -51.92 -0.39 1.10 16 15 C -0.15 -2.63 5.31 -26.61 -0.14 -2.78 16 16 C 0.16 3.51 4.77 -3.71 -0.02 3.49 16 17 N -0.59 -13.84 2.24 -172.05 -0.39 -14.23 16 18 C -0.35 -9.31 9.44 -15.06 -0.14 -9.45 16 19 H 0.05 1.45 7.96 -52.49 -0.42 1.03 16 20 C -0.02 -0.56 4.62 -17.43 -0.08 -0.64 16 21 N -0.91 -26.66 12.52 55.49 0.69 -25.96 16 22 Si 1.06 24.59 29.99 -169.99 -5.10 19.50 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.16 3.14 5.24 -3.49 -0.02 3.12 16 27 C -0.09 -1.35 0.56 -154.17 -0.09 -1.44 16 28 C -0.13 -1.91 7.83 37.15 0.29 -1.61 16 29 C -0.14 -1.73 8.31 37.16 0.31 -1.42 16 30 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.12 1.54 5.13 -51.93 -0.27 1.27 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.17 1.34 7.60 -52.49 -0.40 0.94 16 39 H 0.40 4.09 5.80 -40.82 -0.24 3.85 16 40 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 2.00 6.51 -51.93 -0.34 1.67 16 43 H 0.02 0.44 7.91 -51.93 -0.41 0.03 16 44 H 0.27 8.00 6.98 -40.82 -0.28 7.71 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 47 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 50 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 LS Contribution 401.63 15.07 6.05 6.05 Total: -1.00 -30.60 401.63 -9.55 -40.16 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.38 Total: 4.80 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.03 Total: -1.32 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.17 Total: -60.60 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.50 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.60 -9.55 -40.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941223181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.671 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds