Wall clock time and date at job start Wed Apr 1 2020 04:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46643 * 2 1 4 4 C 1.50703 * 109.46975 * 119.99464 * 2 1 3 5 5 N 1.32161 * 120.53755 * 308.38030 * 4 2 1 6 6 C 1.31858 * 120.96362 * 179.97438 * 5 4 2 7 7 N 1.31881 * 122.09615 * 359.97438 * 6 5 4 8 8 C 1.32134 * 120.97117 * 359.71163 * 7 6 5 9 9 C 1.39925 * 120.53458 * 128.36509 * 4 2 1 10 10 C 1.47833 * 120.94095 * 0.02562 * 9 4 2 11 11 O 1.21562 * 119.99595 * 33.61369 * 10 9 4 12 12 N 1.34777 * 120.00404 * 213.60542 * 10 9 4 13 13 C 1.46498 * 120.00057 * 180.02562 * 12 10 9 14 14 H 1.09009 * 109.45758 * 325.02682 * 13 12 10 15 15 C 1.53032 * 109.46222 * 85.00285 * 13 12 10 16 16 C 1.53193 * 109.31198 * 181.37194 * 15 13 12 17 17 N 1.46930 * 108.77799 * 305.36207 * 16 15 13 18 18 C 1.36926 * 120.63235 * 233.58948 * 17 16 15 19 19 H 1.07997 * 120.00001 * 150.20438 * 18 17 16 20 20 C 1.38814 * 120.00300 * 330.19981 * 18 17 16 21 21 N 1.31622 * 119.99685 * 333.54293 * 20 18 17 22 22 Si 1.86801 * 120.00152 * 153.54547 * 20 18 17 23 23 H 1.48498 * 109.47155 * 90.00228 * 22 20 18 24 24 H 1.48496 * 109.46853 * 209.99924 * 22 20 18 25 25 H 1.48501 * 109.47114 * 329.99969 * 22 20 18 26 26 C 1.46923 * 118.73358 * 53.86087 * 17 16 15 27 27 C 1.53042 * 109.44802 * 205.06601 * 13 12 10 28 28 C 1.52995 * 109.49737 * 298.57345 * 27 13 12 29 29 C 1.52997 * 109.49802 * 58.63559 * 27 13 12 30 30 H 1.08999 * 109.47224 * 300.00122 * 1 2 3 31 31 H 1.08998 * 109.47266 * 60.00803 * 1 2 3 32 32 H 1.09005 * 109.46759 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47554 * 240.00210 * 2 1 3 34 34 H 1.08999 * 109.47159 * 299.99611 * 3 2 1 35 35 H 1.08999 * 109.47410 * 59.99992 * 3 2 1 36 36 H 1.09004 * 109.47057 * 180.02562 * 3 2 1 37 37 H 1.07998 * 118.94770 * 180.02562 * 6 5 4 38 38 H 1.07992 * 120.54504 * 180.30908 * 8 7 6 39 39 H 0.96994 * 119.99782 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.50139 * 61.42244 * 15 13 12 41 41 H 1.08997 * 109.52624 * 301.33415 * 15 13 12 42 42 H 1.09007 * 109.58488 * 185.57870 * 16 15 13 43 43 H 1.09000 * 109.59146 * 65.15372 * 16 15 13 44 44 H 0.96995 * 120.00148 * 353.90351 * 21 20 18 45 45 H 1.09002 * 109.58949 * 65.92954 * 26 17 16 46 46 H 1.09004 * 109.59001 * 186.35488 * 26 17 16 47 47 H 1.09000 * 109.47230 * 59.99708 * 28 27 13 48 48 H 1.09002 * 109.47290 * 180.02562 * 28 27 13 49 49 H 1.09004 * 109.46885 * 299.99998 * 28 27 13 50 50 H 1.09004 * 109.47242 * 60.00159 * 29 27 13 51 51 H 1.09005 * 109.47414 * 180.02562 * 29 27 13 52 52 H 1.08996 * 109.47429 * 300.00058 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.5898 -0.3718 2.4290 6 6 2.0232 -0.9879 3.5112 7 7 2.9097 -1.9627 3.4550 8 6 3.4007 -2.3694 2.2976 9 6 2.9745 -1.7391 1.1227 10 6 3.4997 -2.1537 -0.1955 11 8 3.6449 -1.3305 -1.0781 12 7 3.8178 -3.4443 -0.4188 13 6 4.3388 -3.8549 -1.7250 14 1 3.8621 -3.2648 -2.5079 15 6 5.8516 -3.6277 -1.7648 16 6 6.3875 -4.0260 -3.1436 17 7 5.9771 -5.4075 -3.4296 18 6 6.9039 -6.3520 -3.7817 19 1 6.7387 -7.3898 -3.5328 20 6 8.0558 -5.9756 -4.4588 21 7 8.0550 -4.8930 -5.2074 22 14 9.6069 -7.0055 -4.3075 23 1 9.6187 -8.0417 -5.3711 24 1 10.7979 -6.1310 -4.4552 25 1 9.6370 -7.6624 -2.9760 26 6 4.5526 -5.7548 -3.3364 27 6 4.0378 -5.3385 -1.9501 28 6 4.7349 -6.1703 -0.8717 29 6 2.5273 -5.5700 -1.8766 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4427 -0.0005 37 1 1.6393 -0.6852 4.4742 38 1 4.1226 -3.1716 2.2592 39 1 3.7017 -4.1011 0.2854 40 1 6.3313 -4.2364 -0.9984 41 1 6.0669 -2.5752 -1.5811 42 1 7.4756 -3.9603 -3.1456 43 1 5.9777 -3.3587 -3.9018 44 1 7.2287 -4.4076 -5.3574 45 1 3.9960 -5.2256 -4.1099 46 1 4.4293 -6.8301 -3.4656 47 1 4.3700 -5.8707 0.1107 48 1 4.5207 -7.2268 -1.0327 49 1 5.8112 -6.0059 -0.9252 50 1 2.0311 -4.9781 -2.6458 51 1 2.3134 -6.6268 -2.0365 52 1 2.1610 -5.2702 -0.8948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941223181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:59 Heat of formation + Delta-G solvation = 1.560082 kcal Electronic energy + Delta-G solvation = -32095.541297 eV Core-core repulsion = 28094.480830 eV Total energy + Delta-G solvation = -4001.060468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 7.93 seconds Orbital eigenvalues (eV) -42.54197 -41.22930 -39.60826 -37.22139 -36.52134 -34.78689 -34.10714 -33.29223 -32.79453 -31.36466 -28.20709 -28.10644 -27.49112 -27.11080 -26.13161 -25.74321 -23.99546 -22.44950 -21.98805 -21.78975 -19.99071 -19.41433 -18.98839 -18.48628 -17.76522 -17.19686 -16.40244 -16.17988 -16.09490 -15.77345 -15.70163 -15.59302 -15.30223 -15.18296 -15.07640 -14.96084 -14.52803 -14.32969 -14.09809 -13.93144 -13.55208 -13.10991 -12.93442 -12.84680 -12.75941 -12.71370 -12.54992 -12.54194 -12.45492 -12.34507 -12.33775 -12.03975 -11.90840 -11.77282 -11.64770 -11.59955 -11.43640 -11.19925 -10.85756 -10.76042 -10.41865 -10.37807 -10.07156 -8.90617 -8.22341 -5.38666 -0.61793 -0.12899 1.58337 1.59553 1.66938 1.84081 1.93419 2.61237 2.66867 2.86929 3.05012 3.19193 3.22549 3.46016 3.56257 3.61736 3.72371 3.86148 3.95414 4.05952 4.13597 4.14323 4.26411 4.32712 4.38488 4.49251 4.53478 4.62361 4.72584 4.74363 4.75447 4.83114 4.87066 4.89433 4.90500 4.95652 5.03926 5.05471 5.10961 5.14657 5.17022 5.19921 5.25022 5.30107 5.33299 5.37029 5.43395 5.62973 5.76655 5.90170 6.37522 6.40640 6.89523 7.04678 7.06805 7.78979 8.25456 9.01608 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.002775 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.042521 B =10088.517328 C =10321.068319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C -0.126 4.126 4 C 0.232 3.768 5 N -0.525 5.525 6 C 0.314 3.686 7 N -0.533 5.533 8 C 0.191 3.809 9 C -0.251 4.251 10 C 0.568 3.432 11 O -0.555 6.555 12 N -0.696 5.696 13 C 0.178 3.822 14 H 0.062 0.938 15 C -0.130 4.130 16 C 0.165 3.835 17 N -0.607 5.607 18 C -0.348 4.348 19 H 0.054 0.946 20 C -0.075 4.075 21 N -0.942 5.942 22 Si 1.112 2.888 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.157 3.843 27 C -0.077 4.077 28 C -0.126 4.126 29 C -0.131 4.131 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.235 0.765 38 H 0.196 0.804 39 H 0.411 0.589 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.043 0.957 43 H -0.005 1.005 44 H 0.252 0.748 45 H 0.007 0.993 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.046 0.954 50 H 0.047 0.953 51 H 0.068 0.932 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 5.249 18.426 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.184 4.184 4 C 0.085 3.915 5 N -0.238 5.238 6 C 0.028 3.972 7 N -0.247 5.247 8 C 0.024 3.976 9 C -0.258 4.258 10 C 0.354 3.646 11 O -0.435 6.435 12 N -0.347 5.347 13 C 0.074 3.926 14 H 0.080 0.920 15 C -0.170 4.170 16 C 0.039 3.961 17 N -0.330 5.330 18 C -0.477 4.477 19 H 0.072 0.928 20 C -0.272 4.272 21 N -0.584 5.584 22 Si 0.937 3.063 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.198 1.198 26 C 0.031 3.969 27 C -0.079 4.079 28 C -0.184 4.184 29 C -0.188 4.188 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.251 0.749 38 H 0.213 0.787 39 H 0.250 0.750 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.013 0.987 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.087 0.913 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.757 5.979 18.290 24.249 hybrid contribution -0.911 -0.271 -0.772 1.225 sum -15.668 5.709 17.517 24.186 Atomic orbital electron populations 1.21733 0.91962 1.01939 1.03354 1.20574 0.97757 0.97297 0.93195 1.21620 1.00166 0.93574 1.03047 1.21992 0.87172 0.87891 0.94433 1.68380 1.27563 1.29327 0.98554 1.25960 0.87009 0.85762 0.98450 1.68563 1.12292 1.15556 1.28251 1.23859 0.93258 0.94676 0.85850 1.21555 1.05032 1.03287 0.95953 1.18021 0.77221 0.82686 0.86648 1.90766 1.54300 1.52070 1.46339 1.45932 1.64548 1.08440 1.15785 1.20632 0.92679 0.95117 0.84216 0.92030 1.22286 0.96097 0.99948 0.98655 1.20636 0.97671 0.85091 0.92736 1.44271 1.02448 1.06756 1.79575 1.20133 1.02776 0.90836 1.33988 0.92845 1.27139 1.05447 1.01087 0.93512 1.70877 1.30395 1.21995 1.35109 0.82924 0.72787 0.73958 0.76678 1.21156 1.22100 1.19750 1.21157 0.84016 0.98300 0.93404 1.21253 0.96762 0.92817 0.97108 1.21729 1.00430 0.99291 0.96915 1.21758 0.92550 1.02317 1.02202 0.91146 0.90784 0.93260 0.88693 0.90660 0.91516 0.94253 0.74907 0.78733 0.75048 0.90912 0.93044 0.93866 0.98750 0.93858 0.97548 0.92336 0.90956 0.92492 0.93492 0.93407 0.91341 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.03 71.98 0.65 -1.65 16 2 C -0.07 -1.51 2.74 -11.54 -0.03 -1.54 16 3 C -0.13 -2.59 9.17 71.98 0.66 -1.93 16 4 C 0.23 5.08 5.53 42.92 0.24 5.32 16 5 N -0.52 -10.08 9.93 -187.06 -1.86 -11.94 16 6 C 0.31 4.86 12.27 180.84 2.22 7.08 16 7 N -0.53 -9.23 10.42 -198.98 -2.07 -11.30 16 8 C 0.19 3.29 10.63 85.07 0.90 4.19 16 9 C -0.25 -5.42 5.83 -19.91 -0.12 -5.54 16 10 C 0.57 14.85 7.12 86.78 0.62 15.47 16 11 O -0.56 -18.76 13.95 -3.91 -0.05 -18.81 16 12 N -0.70 -16.18 4.22 -445.29 -1.88 -18.06 16 13 C 0.18 5.49 1.57 45.02 0.07 5.56 16 14 H 0.06 2.23 7.58 -2.38 -0.02 2.21 16 15 C -0.13 -4.79 5.31 30.67 0.16 -4.63 16 16 C 0.17 7.84 4.77 86.36 0.41 8.25 16 17 N -0.61 -29.15 2.24 -698.24 -1.57 -30.72 16 18 C -0.35 -18.73 9.44 84.04 0.79 -17.94 16 19 H 0.05 2.86 7.96 -2.91 -0.02 2.83 16 20 C -0.08 -4.22 4.62 84.86 0.39 -3.83 16 21 N -0.94 -57.63 12.52 21.65 0.27 -57.35 16 22 Si 1.11 50.31 29.99 68.60 2.06 52.37 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.16 6.16 5.24 86.51 0.45 6.62 16 27 C -0.08 -2.24 0.56 -51.96 -0.03 -2.26 16 28 C -0.13 -3.34 7.83 71.98 0.56 -2.77 16 29 C -0.13 -2.93 8.31 71.98 0.60 -2.33 16 30 H 0.07 1.16 7.93 -2.39 -0.02 1.14 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 2.53 5.13 -2.39 -0.01 2.52 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.23 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.20 2.28 7.60 -2.91 -0.02 2.25 16 39 H 0.41 6.99 5.80 -92.71 -0.54 6.45 16 40 H 0.07 2.58 6.34 -2.39 -0.02 2.57 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 2.33 6.51 -2.38 -0.02 2.31 16 43 H -0.01 -0.28 7.91 -2.39 -0.02 -0.30 16 44 H 0.25 15.86 6.98 -92.71 -0.65 15.21 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 47 H 0.07 1.35 6.58 -2.39 -0.02 1.33 16 48 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.05 1.55 5.97 -2.38 -0.01 1.53 16 50 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 52 H 0.07 1.29 7.36 -2.39 -0.02 1.27 16 Total: -1.00 -70.05 401.63 3.97 -66.08 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.51 Total: 21.66 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 8.56 Total: 8.07 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -7.10 Total: -129.37 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.06 Total: 52.37 kcal Total: -70.05 3.97 -66.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941223181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.643 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.93 seconds