Wall clock time and date at job start Wed Apr 1 2020 04:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.50698 * 109.47571 * 179.97438 * 3 2 1 5 5 N 1.34658 * 125.80369 * 265.19062 * 4 3 2 6 6 H 0.97005 * 124.84536 * 0.02562 * 5 4 3 7 7 C 1.36438 * 110.29775 * 180.27742 * 5 4 3 8 8 C 1.34489 * 108.85906 * 359.72914 * 7 5 4 9 9 C 1.36770 * 125.79967 * 84.99413 * 4 3 2 10 10 C 1.47266 * 126.94423 * 359.97438 * 9 4 3 11 11 O 1.21622 * 120.00004 * 321.68827 * 10 9 4 12 12 N 1.34776 * 119.99845 * 141.41170 * 10 9 4 13 13 C 1.47077 * 120.87919 * 174.39169 * 12 10 9 14 14 C 1.53701 * 108.27612 * 128.75451 * 13 12 10 15 15 N 1.46897 * 109.25556 * 54.08162 * 14 13 12 16 16 C 1.46907 * 110.99742 * 172.60718 * 15 14 13 17 17 C 1.53947 * 113.73939 * 43.04206 * 16 15 14 18 18 N 1.47813 * 86.03326 * 222.08077 * 17 16 15 19 19 C 1.36937 * 134.45359 * 204.64010 * 18 17 16 20 20 H 1.08002 * 119.99480 * 179.87130 * 19 18 17 21 21 C 1.38807 * 120.00401 * 359.87179 * 19 18 17 22 22 N 1.31615 * 119.99939 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47149 * 90.00495 * 23 21 19 25 25 H 1.48503 * 109.47179 * 210.00165 * 23 21 19 26 26 H 1.48499 * 109.47483 * 330.00335 * 23 21 19 27 27 C 1.47574 * 91.05241 * 24.55413 * 18 17 16 28 28 C 1.46895 * 111.26953 * 296.75566 * 15 14 13 29 29 C 1.47077 * 120.87960 * 354.66707 * 12 10 9 30 30 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47608 * 300.00382 * 1 2 3 32 32 H 1.09007 * 109.46711 * 60.00901 * 1 2 3 33 33 H 1.08998 * 109.47608 * 239.99617 * 2 1 3 34 34 H 1.09007 * 109.46711 * 119.99099 * 2 1 3 35 35 H 1.09004 * 109.47014 * 59.99054 * 3 2 1 36 36 H 1.09007 * 109.46512 * 299.99659 * 3 2 1 37 37 H 1.08005 * 125.57070 * 179.69888 * 7 5 4 38 38 H 1.07999 * 126.83501 * 180.02562 * 8 7 5 39 39 H 1.09004 * 109.62647 * 248.51887 * 13 12 10 40 40 H 1.08998 * 109.62918 * 9.10135 * 13 12 10 41 41 H 1.08996 * 109.64792 * 294.07688 * 14 13 12 42 42 H 1.09005 * 109.41865 * 173.94990 * 14 13 12 43 43 H 1.08996 * 112.94125 * 174.63408 * 16 15 14 44 44 H 1.09002 * 113.77205 * 336.34790 * 17 16 15 45 45 H 1.09004 * 113.76671 * 107.74762 * 17 16 15 46 46 H 0.97001 * 120.00092 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.77369 * 221.15363 * 27 18 17 48 48 H 1.08999 * 113.87558 * 89.76142 * 27 18 17 49 49 H 1.09004 * 109.49369 * 303.14419 * 28 15 14 50 50 H 1.09000 * 109.49298 * 183.07245 * 28 15 14 51 51 H 1.08991 * 109.63382 * 350.89606 * 29 12 10 52 52 H 1.09003 * 109.62635 * 111.48298 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4427 0.0006 5 7 4.3343 1.5345 1.0892 6 1 4.0124 1.6110 2.0011 7 6 5.6491 1.5102 0.7258 8 6 5.7284 1.3955 -0.6118 9 6 4.3475 1.3458 -1.1041 10 6 3.9112 1.2223 -2.5052 11 8 2.9420 0.5420 -2.7826 12 7 4.5827 1.8677 -3.4794 13 6 4.2413 1.6622 -4.8952 14 6 4.0414 3.0394 -5.5476 15 7 5.2326 3.8655 -5.3101 16 6 5.1585 5.1249 -6.0628 17 6 3.7730 5.7944 -6.0159 18 7 3.9691 6.0660 -7.4555 19 6 3.4783 6.9973 -8.3313 20 1 3.7892 6.9825 -9.3655 21 6 2.5814 7.9604 -7.8899 22 7 2.2030 7.9787 -6.6294 23 14 1.9125 9.2312 -9.0845 24 1 0.6682 8.7158 -9.7100 25 1 1.6148 10.4891 -8.3536 26 1 2.9227 9.4989 -10.1395 27 6 4.9073 4.9326 -7.5694 28 6 5.4276 4.1198 -3.8765 29 6 5.6802 2.7915 -3.1552 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 6.4891 1.5732 1.4018 38 1 6.6294 1.3488 -1.2054 39 1 5.0523 1.1316 -5.3941 40 1 3.3208 1.0833 -4.9695 41 1 3.1682 3.5271 -5.1141 42 1 3.8934 2.9143 -6.6203 43 1 5.9816 5.8032 -5.8382 44 1 2.9574 5.1022 -5.8064 45 1 3.7397 6.6923 -5.3988 46 1 1.5765 8.6519 -6.3209 47 1 5.7780 5.1436 -8.1904 48 1 4.4274 3.9859 -7.8175 49 1 4.5351 4.5924 -3.4662 50 1 6.2849 4.7783 -3.7372 51 1 5.7116 2.9596 -2.0788 52 1 6.6268 2.3674 -3.4902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941528903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:04 Heat of formation + Delta-G solvation = 80.877139 kcal Electronic energy + Delta-G solvation = -31290.308528 eV Core-core repulsion = 27292.687506 eV Total energy + Delta-G solvation = -3997.621022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.52723 -39.79553 -38.52150 -36.44537 -35.08963 -33.61438 -31.87971 -31.62886 -30.46433 -30.12695 -28.01815 -26.51070 -25.84709 -24.82679 -23.86020 -22.91869 -22.16567 -21.70438 -20.94754 -20.55381 -18.76783 -18.08096 -17.77252 -16.78843 -16.33378 -15.73748 -15.41903 -15.10699 -15.06894 -14.88755 -14.62907 -14.43863 -14.23617 -14.07873 -13.75991 -13.62467 -13.44114 -13.02734 -12.91925 -12.57598 -12.30173 -12.15216 -12.02859 -11.78356 -11.71848 -11.49296 -11.45405 -11.36743 -11.17857 -10.90972 -10.79360 -10.73438 -10.59630 -10.51923 -10.09854 -9.87182 -9.70216 -9.46084 -8.92088 -8.76525 -8.54734 -8.31302 -7.73385 -6.82227 -5.74283 -3.06803 1.75935 2.26812 2.87814 3.20154 3.40158 3.42360 3.44965 3.46937 4.22716 4.49960 4.52302 4.66514 4.80527 4.89877 4.94664 5.13806 5.16401 5.17980 5.28496 5.30328 5.35285 5.44166 5.46289 5.51911 5.55266 5.59147 5.64516 5.68050 5.73771 5.76200 5.82593 5.89502 5.94214 6.01244 6.05887 6.10201 6.17850 6.24455 6.29123 6.43539 6.55620 6.59366 6.66842 6.68177 6.80221 7.09532 7.22939 7.24378 7.45372 7.55829 7.61415 7.69876 8.00297 8.40033 9.06357 9.73026 10.62348 11.42357 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.002503 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.087841 B =11182.573201 C =11927.269282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.054 4.054 4 C 0.098 3.902 5 N -0.553 5.553 6 H 0.414 0.586 7 C -0.017 4.017 8 C -0.168 4.168 9 C -0.223 4.223 10 C 0.591 3.409 11 O -0.548 6.548 12 N -0.605 5.605 13 C 0.119 3.881 14 C 0.037 3.963 15 N -0.529 5.529 16 C 0.035 3.965 17 C 0.133 3.867 18 N -0.609 5.609 19 C -0.220 4.220 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.124 3.876 28 C 0.042 3.958 29 C 0.111 3.889 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.252 0.748 47 H 0.045 0.955 48 H 0.038 0.962 49 H 0.039 0.961 50 H 0.083 0.917 51 H 0.096 0.904 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -15.484 18.747 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.093 4.093 4 C -0.019 4.019 5 N -0.148 5.148 6 H 0.251 0.749 7 C -0.145 4.145 8 C -0.193 4.193 9 C -0.233 4.233 10 C 0.381 3.619 11 O -0.427 6.427 12 N -0.338 5.338 13 C -0.003 4.003 14 C -0.092 4.092 15 N -0.253 5.253 16 C -0.073 4.073 17 C 0.006 3.994 18 N -0.336 5.336 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.002 4.002 28 C -0.087 4.087 29 C -0.012 4.012 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.047 0.953 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.101 0.899 51 H 0.114 0.886 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.531 -15.803 18.449 25.154 hybrid contribution -1.128 1.348 0.069 1.759 sum 5.403 -14.455 18.518 24.105 Atomic orbital electron populations 1.21750 0.95556 1.01694 1.01765 1.21501 0.95768 0.95297 1.02932 1.20282 0.86827 0.98744 1.03400 1.20232 0.93247 1.02735 0.85700 1.41542 1.06203 1.58412 1.08639 0.74948 1.21714 0.85618 1.10620 0.96511 1.22058 0.95693 1.07918 0.93583 1.20097 0.93384 1.17636 0.92169 1.17435 0.81743 0.78734 0.83975 1.90732 1.27023 1.41517 1.83449 1.47968 1.35276 1.44198 1.06389 1.21840 1.01815 0.97148 0.79536 1.22677 0.92237 0.92709 1.01554 1.62038 1.38078 1.17923 1.07304 1.24264 0.99599 0.88947 0.94535 1.22916 0.91942 0.97229 0.87282 1.45833 1.51298 1.29688 1.06784 1.19015 1.20649 1.04276 0.90874 0.90215 1.24783 0.99753 0.99488 0.96516 1.69829 1.36694 1.36567 1.13801 0.86124 0.78943 0.80883 0.79847 1.21652 1.21678 1.20592 1.22693 0.92946 0.91366 0.93206 1.22395 1.01327 0.96229 0.88778 1.22070 0.89479 0.89049 1.00629 0.92675 0.93183 0.92257 0.89717 0.92892 0.91418 0.89154 0.81435 0.83579 0.91117 0.89008 0.93522 0.89106 0.88287 0.95325 0.91371 0.93751 0.93691 0.94459 0.94286 0.89891 0.88615 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.15 5.89 -26.73 -0.16 -1.31 16 3 C -0.05 -0.54 5.09 -27.88 -0.14 -0.68 16 4 C 0.10 1.02 6.43 -81.88 -0.53 0.50 16 5 N -0.55 -4.06 5.90 -9.11 -0.05 -4.11 16 6 H 0.41 1.75 8.96 -40.82 -0.37 1.38 16 7 C -0.02 -0.12 11.89 -16.83 -0.20 -0.32 16 8 C -0.17 -1.59 8.70 -37.50 -0.33 -1.92 16 9 C -0.22 -2.72 5.35 -103.35 -0.55 -3.27 16 10 C 0.59 8.73 7.40 -12.59 -0.09 8.64 16 11 O -0.55 -9.47 14.59 5.26 0.08 -9.39 16 12 N -0.61 -8.35 3.00 -173.51 -0.52 -8.87 16 13 C 0.12 1.69 6.64 -3.36 -0.02 1.66 16 14 C 0.04 0.59 4.65 -3.46 -0.02 0.57 16 15 N -0.53 -8.37 4.77 -227.94 -1.09 -9.46 16 16 C 0.04 0.67 4.05 -69.92 -0.28 0.39 16 17 C 0.13 3.17 6.81 -2.84 -0.02 3.15 16 18 N -0.61 -15.88 3.70 -177.89 -0.66 -16.54 16 19 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.92 -27.81 11.39 55.49 0.63 -27.18 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.12 2.58 8.40 -2.97 -0.02 2.56 16 28 C 0.04 0.58 5.55 -3.70 -0.02 0.56 16 29 C 0.11 1.30 5.60 -3.60 -0.02 1.28 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.07 6.82 -51.93 -0.35 0.71 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.09 7.93 -51.92 -0.41 0.68 16 37 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.15 1.19 7.39 -52.49 -0.39 0.80 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.37 7.04 -51.93 -0.37 1.00 16 41 H 0.05 0.86 6.38 -51.93 -0.33 0.53 16 42 H 0.09 1.50 5.81 -51.93 -0.30 1.20 16 43 H 0.10 1.86 8.11 -51.93 -0.42 1.44 16 44 H 0.03 0.72 5.76 -51.93 -0.30 0.42 16 45 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 46 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.04 0.75 5.93 -51.93 -0.31 0.45 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 51 H 0.10 1.01 4.86 -51.93 -0.25 0.76 16 52 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -34.31 400.52 -11.26 -45.57 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.37 Total: 2.45 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.29 Total: 4.03 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -1.69 Total: -66.15 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.31 -11.26 -45.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941528903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.442 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds