Wall clock time and date at job start Wed Apr 1 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.50698 * 109.47571 * 179.97438 * 3 2 1 5 5 N 1.34658 * 125.80369 * 265.19062 * 4 3 2 6 6 H 0.97005 * 124.84536 * 0.02562 * 5 4 3 7 7 C 1.36438 * 110.29775 * 180.27742 * 5 4 3 8 8 C 1.34489 * 108.85906 * 359.72914 * 7 5 4 9 9 C 1.36770 * 125.79967 * 84.99413 * 4 3 2 10 10 C 1.47266 * 126.94423 * 359.97438 * 9 4 3 11 11 O 1.21622 * 120.00004 * 321.68827 * 10 9 4 12 12 N 1.34776 * 119.99845 * 141.41170 * 10 9 4 13 13 C 1.47077 * 120.87919 * 174.39169 * 12 10 9 14 14 C 1.53701 * 108.27612 * 128.75451 * 13 12 10 15 15 N 1.46897 * 109.25556 * 54.08162 * 14 13 12 16 16 C 1.46907 * 110.99742 * 172.60718 * 15 14 13 17 17 C 1.53947 * 113.73939 * 43.04206 * 16 15 14 18 18 N 1.47813 * 86.03326 * 222.08077 * 17 16 15 19 19 C 1.36937 * 134.45359 * 204.64010 * 18 17 16 20 20 H 1.08002 * 119.99480 * 179.87130 * 19 18 17 21 21 C 1.38807 * 120.00401 * 359.87179 * 19 18 17 22 22 N 1.31615 * 119.99939 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47149 * 90.00495 * 23 21 19 25 25 H 1.48503 * 109.47179 * 210.00165 * 23 21 19 26 26 H 1.48499 * 109.47483 * 330.00335 * 23 21 19 27 27 C 1.47574 * 91.05241 * 24.55413 * 18 17 16 28 28 C 1.46895 * 111.26953 * 296.75566 * 15 14 13 29 29 C 1.47077 * 120.87960 * 354.66707 * 12 10 9 30 30 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47608 * 300.00382 * 1 2 3 32 32 H 1.09007 * 109.46711 * 60.00901 * 1 2 3 33 33 H 1.08998 * 109.47608 * 239.99617 * 2 1 3 34 34 H 1.09007 * 109.46711 * 119.99099 * 2 1 3 35 35 H 1.09004 * 109.47014 * 59.99054 * 3 2 1 36 36 H 1.09007 * 109.46512 * 299.99659 * 3 2 1 37 37 H 1.08005 * 125.57070 * 179.69888 * 7 5 4 38 38 H 1.07999 * 126.83501 * 180.02562 * 8 7 5 39 39 H 1.09004 * 109.62647 * 248.51887 * 13 12 10 40 40 H 1.08998 * 109.62918 * 9.10135 * 13 12 10 41 41 H 1.08996 * 109.64792 * 294.07688 * 14 13 12 42 42 H 1.09005 * 109.41865 * 173.94990 * 14 13 12 43 43 H 1.08996 * 112.94125 * 174.63408 * 16 15 14 44 44 H 1.09002 * 113.77205 * 336.34790 * 17 16 15 45 45 H 1.09004 * 113.76671 * 107.74762 * 17 16 15 46 46 H 0.97001 * 120.00092 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.77369 * 221.15363 * 27 18 17 48 48 H 1.08999 * 113.87558 * 89.76142 * 27 18 17 49 49 H 1.09004 * 109.49369 * 303.14419 * 28 15 14 50 50 H 1.09000 * 109.49298 * 183.07245 * 28 15 14 51 51 H 1.08991 * 109.63382 * 350.89606 * 29 12 10 52 52 H 1.09003 * 109.62635 * 111.48298 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4427 0.0006 5 7 4.3343 1.5345 1.0892 6 1 4.0124 1.6110 2.0011 7 6 5.6491 1.5102 0.7258 8 6 5.7284 1.3955 -0.6118 9 6 4.3475 1.3458 -1.1041 10 6 3.9112 1.2223 -2.5052 11 8 2.9420 0.5420 -2.7826 12 7 4.5827 1.8677 -3.4794 13 6 4.2413 1.6622 -4.8952 14 6 4.0414 3.0394 -5.5476 15 7 5.2326 3.8655 -5.3101 16 6 5.1585 5.1249 -6.0628 17 6 3.7730 5.7944 -6.0159 18 7 3.9691 6.0660 -7.4555 19 6 3.4783 6.9973 -8.3313 20 1 3.7892 6.9825 -9.3655 21 6 2.5814 7.9604 -7.8899 22 7 2.2030 7.9787 -6.6294 23 14 1.9125 9.2312 -9.0845 24 1 0.6682 8.7158 -9.7100 25 1 1.6148 10.4891 -8.3536 26 1 2.9227 9.4989 -10.1395 27 6 4.9073 4.9326 -7.5694 28 6 5.4276 4.1198 -3.8765 29 6 5.6802 2.7915 -3.1552 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 6.4891 1.5732 1.4018 38 1 6.6294 1.3488 -1.2054 39 1 5.0523 1.1316 -5.3941 40 1 3.3208 1.0833 -4.9695 41 1 3.1682 3.5271 -5.1141 42 1 3.8934 2.9143 -6.6203 43 1 5.9816 5.8032 -5.8382 44 1 2.9574 5.1022 -5.8064 45 1 3.7397 6.6923 -5.3988 46 1 1.5765 8.6519 -6.3209 47 1 5.7780 5.1436 -8.1904 48 1 4.4274 3.9859 -7.8175 49 1 4.5351 4.5924 -3.4662 50 1 6.2849 4.7783 -3.7372 51 1 5.7116 2.9596 -2.0788 52 1 6.6268 2.3674 -3.4902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941528903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:03 Heat of formation + Delta-G solvation = 57.702902 kcal Electronic energy + Delta-G solvation = -31291.313438 eV Core-core repulsion = 27292.687506 eV Total energy + Delta-G solvation = -3998.625932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.27427 -41.09631 -39.90495 -37.83475 -35.89367 -35.10423 -33.76782 -32.67771 -31.43317 -30.86254 -29.72425 -27.87332 -26.83061 -26.65227 -25.04201 -24.50274 -23.43114 -22.56172 -21.79336 -21.60306 -20.22141 -19.20043 -18.74771 -18.57247 -17.52659 -16.98816 -16.85267 -16.62398 -16.20398 -16.08751 -15.89628 -15.63279 -15.44782 -15.20031 -14.86681 -14.70004 -14.35661 -14.18599 -13.80841 -13.77083 -13.71843 -13.45819 -13.38449 -13.21160 -13.11541 -12.81161 -12.74736 -12.65035 -12.28028 -12.24207 -12.16657 -12.12081 -11.95734 -11.85090 -11.75994 -11.58674 -11.38280 -10.89315 -10.79737 -9.77145 -9.58105 -9.25308 -9.05110 -8.86665 -7.92303 -5.26996 0.88728 1.42765 1.45305 1.54036 1.61413 1.98659 2.36507 2.43222 2.49795 2.88537 3.27028 3.48135 3.72863 3.79324 3.83966 3.99562 4.04713 4.08230 4.15195 4.20857 4.27799 4.35766 4.42113 4.44153 4.50518 4.56781 4.58808 4.66412 4.69586 4.77496 4.80708 4.86286 4.90014 4.91205 4.93994 4.98271 5.07008 5.09364 5.13103 5.20739 5.22676 5.34272 5.36723 5.42500 5.46602 5.59347 5.86070 5.88425 6.03906 6.07421 6.16161 6.54400 6.73172 6.88178 7.30361 7.58002 8.53557 9.23772 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.002503 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.087841 B =11182.573201 C =11927.269282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.052 4.052 4 C 0.089 3.911 5 N -0.538 5.538 6 H 0.431 0.569 7 C 0.005 3.995 8 C -0.186 4.186 9 C -0.256 4.256 10 C 0.583 3.417 11 O -0.586 6.586 12 N -0.610 5.610 13 C 0.127 3.873 14 C 0.045 3.955 15 N -0.513 5.513 16 C 0.067 3.933 17 C 0.134 3.866 18 N -0.639 5.639 19 C -0.233 4.233 20 H 0.087 0.913 21 C -0.071 4.071 22 N -0.956 5.956 23 Si 0.981 3.019 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.264 1.264 27 C 0.126 3.874 28 C 0.040 3.960 29 C 0.120 3.880 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.209 0.791 38 H 0.159 0.841 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.013 0.987 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.010 0.990 45 H 0.032 0.968 46 H 0.247 0.753 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.013 0.987 50 H 0.106 0.894 51 H 0.112 0.888 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.353 -16.035 20.379 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.091 4.091 4 C -0.030 4.030 5 N -0.134 5.134 6 H 0.271 0.729 7 C -0.123 4.123 8 C -0.210 4.210 9 C -0.266 4.266 10 C 0.375 3.625 11 O -0.468 6.468 12 N -0.342 5.342 13 C 0.004 3.996 14 C -0.084 4.084 15 N -0.237 5.237 16 C -0.042 4.042 17 C 0.007 3.993 18 N -0.366 5.366 19 C -0.361 4.361 20 H 0.104 0.896 21 C -0.263 4.263 22 N -0.605 5.605 23 Si 0.809 3.191 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.189 1.189 27 C 0.001 3.999 28 C -0.089 4.089 29 C -0.002 4.002 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.226 0.774 38 H 0.177 0.823 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.031 0.969 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.028 0.972 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.031 0.969 50 H 0.124 0.876 51 H 0.130 0.870 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.108 -16.376 20.096 27.477 hybrid contribution -1.911 1.458 -0.385 2.434 sum 7.197 -14.918 19.711 25.747 Atomic orbital electron populations 1.21739 0.94930 1.02121 1.01781 1.21409 0.96302 0.95119 1.02044 1.20219 0.87137 0.98626 1.03069 1.20214 0.93411 1.02952 0.86424 1.41553 1.06092 1.56990 1.08784 0.72902 1.22334 0.86198 1.07462 0.96342 1.22253 0.94683 1.09282 0.94767 1.20123 0.95528 1.19989 0.91002 1.17973 0.81135 0.78129 0.85288 1.90704 1.28691 1.43222 1.84199 1.48093 1.35728 1.44406 1.05965 1.21696 1.02057 0.95575 0.80242 1.22561 0.91079 0.93599 1.01162 1.62106 1.37207 1.15777 1.08562 1.23854 0.96600 0.89774 0.94002 1.22803 0.94595 0.95789 0.86130 1.46236 1.52108 1.30897 1.07399 1.19457 1.20299 1.04739 0.91638 0.89570 1.25679 1.00556 1.01863 0.98226 1.70042 1.37448 1.37336 1.15707 0.85040 0.78307 0.77875 0.77899 1.21555 1.22027 1.18856 1.22840 0.92339 0.90090 0.94626 1.22556 1.01113 0.98078 0.87153 1.22170 0.89472 0.87228 1.01379 0.92067 0.91245 0.94102 0.93109 0.91082 0.88757 0.92375 0.77395 0.82312 0.89068 0.90353 0.96907 0.89613 0.87143 0.97212 0.94983 0.94443 0.91989 0.93386 0.96871 0.87553 0.86964 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.11 -2.21 5.89 30.60 0.18 -2.03 16 3 C -0.05 -1.04 5.09 29.85 0.15 -0.89 16 4 C 0.09 1.76 6.43 41.78 0.27 2.03 16 5 N -0.54 -6.28 5.90 -182.73 -1.08 -7.35 16 6 H 0.43 2.07 8.96 -92.70 -0.83 1.24 16 7 C 0.00 0.05 11.89 83.12 0.99 1.04 16 8 C -0.19 -3.03 8.70 23.62 0.21 -2.83 16 9 C -0.26 -6.10 5.35 -19.04 -0.10 -6.21 16 10 C 0.58 17.75 7.40 86.62 0.64 18.39 16 11 O -0.59 -21.64 14.59 -4.10 -0.06 -21.70 16 12 N -0.61 -16.81 3.00 -821.11 -2.47 -19.28 16 13 C 0.13 3.65 6.64 86.51 0.57 4.23 16 14 C 0.04 1.48 4.65 86.54 0.40 1.88 16 15 N -0.51 -15.86 4.77 -875.06 -4.17 -20.03 16 16 C 0.07 2.53 4.05 46.67 0.19 2.72 16 17 C 0.13 6.66 6.81 86.44 0.59 7.25 16 18 N -0.64 -33.91 3.70 -716.71 -2.65 -36.56 16 19 C -0.23 -13.45 10.70 84.03 0.90 -12.55 16 20 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 22 N -0.96 -59.85 11.39 21.65 0.25 -59.61 16 23 Si 0.98 46.93 29.55 68.60 2.03 48.95 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.13 5.15 8.40 86.49 0.73 5.88 16 28 C 0.04 1.05 5.55 86.39 0.48 1.53 16 29 C 0.12 2.59 5.60 86.35 0.48 3.07 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 1.37 6.82 -2.39 -0.02 1.35 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.53 7.93 -2.38 -0.02 1.51 16 37 H 0.21 0.48 8.06 -2.91 -0.02 0.45 16 38 H 0.16 2.07 7.39 -2.91 -0.02 2.05 16 39 H 0.09 2.26 8.14 -2.38 -0.02 2.25 16 40 H 0.08 2.47 7.04 -2.39 -0.02 2.46 16 41 H 0.01 0.51 6.38 -2.39 -0.02 0.49 16 42 H 0.09 2.89 5.81 -2.38 -0.01 2.88 16 43 H 0.11 3.98 8.11 -2.39 -0.02 3.96 16 44 H 0.01 0.54 5.76 -2.39 -0.01 0.53 16 45 H 0.03 1.80 7.16 -2.38 -0.02 1.78 16 46 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.05 1.90 5.93 -2.39 -0.01 1.89 16 49 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.11 2.38 8.08 -2.39 -0.02 2.36 16 51 H 0.11 2.13 4.86 -2.39 -0.01 2.12 16 52 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -79.11 400.52 -0.20 -79.31 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.10 Total: 18.37 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 7.86 Total: 17.90 kcal Atomic # 7 Polarization: -132.71 SS G_CDS: -10.12 Total: -142.83 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -79.11 -0.20 -79.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941528903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.014 kcal (2) G-P(sol) polarization free energy of solvation -79.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds