Wall clock time and date at job start Wed Apr 1 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 C 1.50696 * 109.47599 * 120.00077 * 2 1 3 5 5 O 1.21280 * 120.00015 * 240.42225 * 4 2 1 6 6 N 1.34776 * 119.99957 * 60.42061 * 4 2 1 7 7 C 1.43512 * 122.54976 * 185.29946 * 6 4 2 8 8 C 1.51720 * 114.25653 * 122.92192 * 7 6 4 9 9 C 1.51154 * 111.88881 * 82.63764 * 8 7 6 10 10 H 1.09001 * 110.23017 * 34.32233 * 9 8 7 11 11 C 1.53396 * 110.93395 * 156.74093 * 9 8 7 12 12 N 1.46606 * 108.10472 * 102.74215 * 11 9 8 13 13 C 1.36937 * 125.31481 * 178.65026 * 12 11 9 14 14 H 1.07993 * 120.00173 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99615 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00117 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99604 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46891 * 90.00677 * 17 15 13 19 19 H 1.48506 * 109.47014 * 210.00112 * 17 15 13 20 20 H 1.48496 * 109.47297 * 330.00147 * 17 15 13 21 21 C 1.46660 * 109.36703 * 358.65971 * 12 11 9 22 22 C 1.54047 * 106.93874 * 18.27169 * 21 12 11 23 23 H 1.08996 * 110.61619 * 91.14633 * 22 21 12 24 24 C 1.51843 * 109.44837 * 214.15841 * 22 21 12 25 25 C 1.49553 * 122.55000 * 5.00450 * 6 4 2 26 26 C 1.50701 * 109.47259 * 240.00174 * 2 1 3 27 27 C 1.34670 * 126.59521 * 232.54240 * 26 2 1 28 28 N 1.34122 * 108.02364 * 179.97438 * 27 26 2 29 29 C 1.30503 * 109.25509 * 0.02562 * 28 27 26 30 30 N 1.35043 * 108.70038 * 359.76644 * 29 28 27 31 31 H 0.97001 * 126.39932 * 180.26949 * 30 29 28 32 32 H 1.08999 * 109.47034 * 292.57419 * 1 2 3 33 33 H 1.09000 * 109.46847 * 172.57922 * 1 2 3 34 34 H 1.08989 * 109.47163 * 52.57672 * 1 2 3 35 35 H 1.09002 * 109.47377 * 55.70623 * 3 2 1 36 36 H 1.08999 * 109.47529 * 175.70748 * 3 2 1 37 37 H 1.09008 * 109.47288 * 295.70811 * 3 2 1 38 38 H 1.08999 * 108.52603 * 244.15829 * 7 6 4 39 39 H 1.08993 * 108.52796 * 1.83760 * 7 6 4 40 40 H 1.09002 * 108.99755 * 203.25809 * 8 7 6 41 41 H 1.08999 * 108.99814 * 322.01812 * 8 7 6 42 42 H 1.08996 * 109.74993 * 222.41312 * 11 9 8 43 43 H 1.09006 * 109.74706 * 343.07856 * 11 9 8 44 44 H 0.96997 * 119.99815 * 180.02562 * 16 15 13 45 45 H 1.08992 * 109.97053 * 137.64321 * 21 12 11 46 46 H 1.08999 * 109.96488 * 258.86588 * 21 12 11 47 47 H 1.09003 * 109.00727 * 295.51262 * 24 22 21 48 48 H 1.08997 * 109.01211 * 54.37907 * 24 22 21 49 49 H 1.08996 * 110.26118 * 9.16777 * 25 6 4 50 50 H 1.09001 * 110.26481 * 131.26415 * 25 6 4 51 51 H 1.08001 * 125.98550 * 359.96041 * 27 26 2 52 52 H 1.08005 * 125.64751 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7234 -0.1188 2.0325 6 7 1.7139 -2.0032 1.4394 7 6 2.0679 -2.7009 2.6425 8 6 0.8887 -3.3005 3.3853 9 6 0.4815 -4.6378 2.8102 10 1 1.3587 -5.1774 2.4533 11 6 -0.2705 -5.4761 3.8517 12 7 -1.7015 -5.4145 3.5391 13 6 -2.6914 -6.0601 4.2308 14 1 -2.4420 -6.6749 5.0829 15 6 -4.0155 -5.9242 3.8367 16 7 -4.3194 -5.1752 2.7978 17 14 -5.3660 -6.8044 4.7807 18 1 -5.8602 -5.9264 5.8716 19 1 -6.4851 -7.1263 3.8591 20 1 -4.8263 -8.0599 5.3616 21 6 -1.9072 -4.5535 2.3698 22 6 -0.5465 -4.4302 1.6583 23 1 -0.4370 -5.2074 0.9021 24 6 -0.4181 -3.0452 1.0492 25 6 0.9591 -2.8180 0.4379 26 6 2.0324 -0.7104 -1.2305 27 6 2.9200 -1.7225 -1.2671 28 7 3.0984 -2.0718 -2.5496 29 6 2.3555 -1.3142 -3.3094 30 7 1.6705 -0.4540 -2.5255 31 1 1.0406 0.2204 -2.8244 32 1 -0.3633 0.3945 0.9489 33 1 -0.3633 -1.0191 -0.1327 34 1 -0.3633 0.6244 -0.8161 35 1 1.6152 1.9781 0.8490 36 1 3.1273 1.4435 0.0769 37 1 1.7408 1.9337 -0.9260 38 1 2.7603 -3.5029 2.3868 39 1 2.5769 -2.0050 3.3094 40 1 1.1590 -3.4322 4.4330 41 1 0.0436 -2.6149 3.3219 42 1 0.0715 -6.5101 3.8089 43 1 -0.0935 -5.0710 4.8481 44 1 -5.2446 -5.0800 2.5227 45 1 -2.6383 -5.0049 1.6991 46 1 -2.2520 -3.5697 2.6880 47 1 -1.1746 -2.9272 0.2732 48 1 -0.5868 -2.2989 1.8254 49 1 0.8669 -2.2716 -0.5007 50 1 1.4595 -3.7723 0.2734 51 1 3.4035 -2.1737 -0.4132 52 1 2.2952 -1.3692 -4.3863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946859424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:10 Heat of formation + Delta-G solvation = 62.462887 kcal Electronic energy + Delta-G solvation = -32878.325950 eV Core-core repulsion = 28879.906426 eV Total energy + Delta-G solvation = -3998.419524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.67574 -40.54040 -38.72266 -35.93673 -35.61882 -33.13038 -32.64509 -32.12996 -30.68770 -29.19166 -27.84450 -27.50685 -27.19268 -24.75562 -23.74766 -22.81076 -22.48158 -21.49827 -21.13976 -20.09459 -19.23280 -18.48111 -18.28768 -16.94830 -16.63148 -16.09688 -15.52244 -15.37995 -14.96820 -14.84694 -14.49264 -14.22791 -14.08377 -13.84297 -13.61485 -13.50910 -13.14374 -12.97979 -12.82165 -12.63797 -12.45674 -12.25554 -12.13906 -11.88378 -11.68470 -11.47770 -11.35270 -11.21966 -11.10377 -10.82038 -10.72423 -10.70854 -10.26671 -10.22833 -10.07949 -9.98707 -9.81348 -9.73568 -9.60909 -9.42345 -8.65238 -8.56126 -8.50801 -6.79758 -5.66867 -3.04948 1.71580 2.38125 2.82016 2.91701 3.03436 3.39611 3.44882 3.46484 4.12553 4.22977 4.50062 4.53679 4.63205 4.68896 4.95944 5.05728 5.08140 5.18970 5.23451 5.24161 5.29608 5.35844 5.41512 5.44328 5.49876 5.50745 5.58062 5.63163 5.74665 5.81629 5.85373 5.86844 5.94417 5.96893 6.02830 6.13735 6.20009 6.33171 6.42454 6.43487 6.54424 6.60940 6.63081 6.69978 6.82508 7.05607 7.06458 7.40960 7.55858 7.66758 7.78973 7.86425 8.10689 8.35818 9.25051 9.86070 10.50159 11.39066 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.002955 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.185906 B = 9473.059429 C = 9830.651581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.003 4.003 3 C -0.125 4.125 4 C 0.539 3.461 5 O -0.537 6.537 6 N -0.598 5.598 7 C 0.109 3.891 8 C -0.125 4.125 9 C -0.092 4.092 10 H 0.066 0.934 11 C 0.142 3.858 12 N -0.602 5.602 13 C -0.223 4.223 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.912 3.088 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.170 3.830 22 C -0.108 4.108 23 H 0.067 0.933 24 C -0.128 4.128 25 C 0.099 3.901 26 C -0.014 4.014 27 C -0.011 4.011 28 N -0.489 5.489 29 C 0.186 3.814 30 N -0.561 5.561 31 H 0.419 0.581 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.251 0.749 45 H 0.088 0.912 46 H 0.013 0.987 47 H 0.065 0.935 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.167 0.833 52 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 12.046 -12.271 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.007 4.007 3 C -0.183 4.183 4 C 0.326 3.674 5 O -0.414 6.414 6 N -0.330 5.330 7 C -0.014 4.014 8 C -0.163 4.163 9 C -0.111 4.111 10 H 0.085 0.915 11 C 0.015 3.985 12 N -0.328 5.328 13 C -0.351 4.351 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.045 3.955 22 C -0.128 4.128 23 H 0.086 0.914 24 C -0.167 4.167 25 C -0.023 4.023 26 C -0.130 4.130 27 C -0.160 4.160 28 N -0.207 5.207 29 C -0.098 4.098 30 N -0.164 5.164 31 H 0.257 0.743 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.031 0.969 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.100 0.900 51 H 0.184 0.816 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.708 11.682 -12.095 21.077 hybrid contribution -1.716 0.394 0.584 1.855 sum 10.992 12.076 -11.511 19.979 Atomic orbital electron populations 1.22194 0.91411 1.04326 1.03421 1.19207 0.97237 0.95765 0.88503 1.21692 1.02537 0.92112 1.01965 1.19827 0.79679 0.81073 0.86830 1.90696 1.37734 1.65677 1.47309 1.47916 1.56344 1.10071 1.18682 1.20656 0.97290 0.96697 0.86802 1.21458 0.98197 0.97459 0.99148 1.21799 0.97551 0.95209 0.96496 0.91531 1.21138 0.85929 0.96180 0.95204 1.44197 1.00282 1.55591 1.32728 1.19081 0.85784 1.21956 1.08326 0.90548 1.24773 0.97093 1.00230 0.98498 1.69891 1.17048 1.42884 1.27302 0.86105 0.81742 0.79107 0.78756 1.21689 1.21696 1.20709 1.21423 0.91273 0.93762 0.89014 1.22400 0.98635 0.95091 0.96648 0.91432 1.21855 0.95453 0.98702 1.00642 1.22746 0.92258 0.95636 0.91625 1.20694 1.04352 1.02719 0.85214 1.22207 1.00629 0.97967 0.95148 1.70332 1.22685 1.25577 1.02104 1.25028 0.95016 0.91075 0.98631 1.43152 1.36161 1.30875 1.06257 0.74270 0.90867 0.90042 0.91788 0.91049 0.91334 0.92487 0.92113 0.90021 0.91065 0.90750 0.96245 0.96161 0.93888 0.89378 0.96934 0.91651 0.90546 0.88985 0.90037 0.81573 0.77420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.18 37.16 0.30 -1.09 16 2 C 0.00 -0.02 0.73 -156.81 -0.11 -0.14 16 3 C -0.13 -1.15 7.78 37.16 0.29 -0.86 16 4 C 0.54 7.05 5.64 -10.99 -0.06 6.98 16 5 O -0.54 -8.65 15.45 5.56 0.09 -8.57 16 6 N -0.60 -7.48 2.08 -174.63 -0.36 -7.84 16 7 C 0.11 1.43 5.74 -6.27 -0.04 1.39 16 8 C -0.12 -1.84 4.77 -28.31 -0.13 -1.98 16 9 C -0.09 -1.50 2.78 -89.86 -0.25 -1.75 16 10 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 11 C 0.14 2.91 6.82 -3.78 -0.03 2.89 16 12 N -0.60 -15.22 3.38 -172.14 -0.58 -15.80 16 13 C -0.22 -6.21 10.25 -15.06 -0.15 -6.36 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 16 N -0.92 -26.59 10.16 55.49 0.56 -26.03 16 17 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.17 3.97 5.13 -3.41 -0.02 3.95 16 22 C -0.11 -1.88 2.93 -89.18 -0.26 -2.14 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 C -0.13 -1.81 3.18 -27.63 -0.09 -1.90 16 25 C 0.10 1.17 3.64 -2.66 -0.01 1.16 16 26 C -0.01 -0.13 3.87 -81.60 -0.32 -0.45 16 27 C -0.01 -0.13 8.78 -17.81 -0.16 -0.28 16 28 N -0.49 -5.68 11.25 -14.66 -0.16 -5.85 16 29 C 0.19 1.45 13.04 -90.37 -1.18 0.28 16 30 N -0.56 -3.82 6.13 -10.29 -0.06 -3.88 16 31 H 0.42 1.55 8.96 -40.82 -0.37 1.19 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.08 0.79 4.00 -51.93 -0.21 0.58 16 34 H 0.06 0.41 8.13 -51.94 -0.42 -0.01 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.72 7.98 -51.93 -0.41 0.31 16 37 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.06 0.73 7.68 -51.93 -0.40 0.34 16 39 H 0.08 1.13 7.01 -51.93 -0.36 0.77 16 40 H 0.07 1.04 7.53 -51.93 -0.39 0.64 16 41 H 0.07 1.24 5.87 -51.93 -0.30 0.94 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.42 7.40 -51.93 -0.38 0.04 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.09 2.35 6.19 -51.93 -0.32 2.03 16 46 H 0.01 0.32 7.72 -51.93 -0.40 -0.08 16 47 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 48 H 0.08 1.18 5.47 -51.93 -0.28 0.89 16 49 H 0.09 1.01 3.33 -51.93 -0.17 0.84 16 50 H 0.08 0.99 7.80 -51.93 -0.41 0.58 16 51 H 0.17 2.07 6.92 -52.49 -0.36 1.71 16 52 H 0.21 0.80 8.06 -52.48 -0.42 0.37 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -33.40 380.43 -10.21 -43.61 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.09 Total: 2.31 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.31 Total: -0.69 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.61 Total: -59.40 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.40 -10.21 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946859424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.074 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds