Wall clock time and date at job start Wed Apr 1 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 C 1.50696 * 109.47599 * 120.00077 * 2 1 3 5 5 O 1.21280 * 120.00015 * 240.42225 * 4 2 1 6 6 N 1.34776 * 119.99957 * 60.42061 * 4 2 1 7 7 C 1.43512 * 122.54976 * 185.29946 * 6 4 2 8 8 C 1.51720 * 114.25653 * 122.92192 * 7 6 4 9 9 C 1.51154 * 111.88881 * 82.63764 * 8 7 6 10 10 H 1.09001 * 110.23017 * 34.32233 * 9 8 7 11 11 C 1.53396 * 110.93395 * 156.74093 * 9 8 7 12 12 N 1.46606 * 108.10472 * 102.74215 * 11 9 8 13 13 C 1.36937 * 125.31481 * 178.65026 * 12 11 9 14 14 H 1.07993 * 120.00173 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99615 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00117 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99604 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46891 * 90.00677 * 17 15 13 19 19 H 1.48506 * 109.47014 * 210.00112 * 17 15 13 20 20 H 1.48496 * 109.47297 * 330.00147 * 17 15 13 21 21 C 1.46660 * 109.36703 * 358.65971 * 12 11 9 22 22 C 1.54047 * 106.93874 * 18.27169 * 21 12 11 23 23 H 1.08996 * 110.61619 * 91.14633 * 22 21 12 24 24 C 1.51843 * 109.44837 * 214.15841 * 22 21 12 25 25 C 1.49553 * 122.55000 * 5.00450 * 6 4 2 26 26 C 1.50701 * 109.47259 * 240.00174 * 2 1 3 27 27 C 1.34670 * 126.59521 * 232.54240 * 26 2 1 28 28 N 1.34122 * 108.02364 * 179.97438 * 27 26 2 29 29 C 1.30503 * 109.25509 * 0.02562 * 28 27 26 30 30 N 1.35043 * 108.70038 * 359.76644 * 29 28 27 31 31 H 0.97001 * 126.39932 * 180.26949 * 30 29 28 32 32 H 1.08999 * 109.47034 * 292.57419 * 1 2 3 33 33 H 1.09000 * 109.46847 * 172.57922 * 1 2 3 34 34 H 1.08989 * 109.47163 * 52.57672 * 1 2 3 35 35 H 1.09002 * 109.47377 * 55.70623 * 3 2 1 36 36 H 1.08999 * 109.47529 * 175.70748 * 3 2 1 37 37 H 1.09008 * 109.47288 * 295.70811 * 3 2 1 38 38 H 1.08999 * 108.52603 * 244.15829 * 7 6 4 39 39 H 1.08993 * 108.52796 * 1.83760 * 7 6 4 40 40 H 1.09002 * 108.99755 * 203.25809 * 8 7 6 41 41 H 1.08999 * 108.99814 * 322.01812 * 8 7 6 42 42 H 1.08996 * 109.74993 * 222.41312 * 11 9 8 43 43 H 1.09006 * 109.74706 * 343.07856 * 11 9 8 44 44 H 0.96997 * 119.99815 * 180.02562 * 16 15 13 45 45 H 1.08992 * 109.97053 * 137.64321 * 21 12 11 46 46 H 1.08999 * 109.96488 * 258.86588 * 21 12 11 47 47 H 1.09003 * 109.00727 * 295.51262 * 24 22 21 48 48 H 1.08997 * 109.01211 * 54.37907 * 24 22 21 49 49 H 1.08996 * 110.26118 * 9.16777 * 25 6 4 50 50 H 1.09001 * 110.26481 * 131.26415 * 25 6 4 51 51 H 1.08001 * 125.98550 * 359.96041 * 27 26 2 52 52 H 1.08005 * 125.64751 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7234 -0.1188 2.0325 6 7 1.7139 -2.0032 1.4394 7 6 2.0679 -2.7009 2.6425 8 6 0.8887 -3.3005 3.3853 9 6 0.4815 -4.6378 2.8102 10 1 1.3587 -5.1774 2.4533 11 6 -0.2705 -5.4761 3.8517 12 7 -1.7015 -5.4145 3.5391 13 6 -2.6914 -6.0601 4.2308 14 1 -2.4420 -6.6749 5.0829 15 6 -4.0155 -5.9242 3.8367 16 7 -4.3194 -5.1752 2.7978 17 14 -5.3660 -6.8044 4.7807 18 1 -5.8602 -5.9264 5.8716 19 1 -6.4851 -7.1263 3.8591 20 1 -4.8263 -8.0599 5.3616 21 6 -1.9072 -4.5535 2.3698 22 6 -0.5465 -4.4302 1.6583 23 1 -0.4370 -5.2074 0.9021 24 6 -0.4181 -3.0452 1.0492 25 6 0.9591 -2.8180 0.4379 26 6 2.0324 -0.7104 -1.2305 27 6 2.9200 -1.7225 -1.2671 28 7 3.0984 -2.0718 -2.5496 29 6 2.3555 -1.3142 -3.3094 30 7 1.6705 -0.4540 -2.5255 31 1 1.0406 0.2204 -2.8244 32 1 -0.3633 0.3945 0.9489 33 1 -0.3633 -1.0191 -0.1327 34 1 -0.3633 0.6244 -0.8161 35 1 1.6152 1.9781 0.8490 36 1 3.1273 1.4435 0.0769 37 1 1.7408 1.9337 -0.9260 38 1 2.7603 -3.5029 2.3868 39 1 2.5769 -2.0050 3.3094 40 1 1.1590 -3.4322 4.4330 41 1 0.0436 -2.6149 3.3219 42 1 0.0715 -6.5101 3.8089 43 1 -0.0935 -5.0710 4.8481 44 1 -5.2446 -5.0800 2.5227 45 1 -2.6383 -5.0049 1.6991 46 1 -2.2520 -3.5697 2.6880 47 1 -1.1746 -2.9272 0.2732 48 1 -0.5868 -2.2989 1.8254 49 1 0.8669 -2.2716 -0.5007 50 1 1.4595 -3.7723 0.2734 51 1 3.4035 -2.1737 -0.4132 52 1 2.2952 -1.3692 -4.3863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946859424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:09 Heat of formation + Delta-G solvation = 42.424455 kcal Electronic energy + Delta-G solvation = -32879.194882 eV Core-core repulsion = 28879.906426 eV Total energy + Delta-G solvation = -3999.288456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.39785 -41.60499 -40.07555 -37.34966 -36.49291 -34.83068 -33.59054 -33.18332 -32.41550 -29.93714 -29.16399 -29.01321 -28.12812 -26.31461 -25.01375 -24.12289 -23.41149 -22.25289 -22.04710 -21.80995 -20.12258 -19.69851 -19.34701 -18.90590 -17.60156 -17.06996 -16.90332 -16.58381 -16.15919 -15.89928 -15.79835 -15.35203 -15.26019 -14.89432 -14.83865 -14.48987 -14.44208 -14.19535 -13.96286 -13.73021 -13.61814 -13.33891 -13.28682 -13.10478 -12.95848 -12.79855 -12.69411 -12.65974 -12.48711 -12.35639 -12.19045 -12.03612 -11.87204 -11.72599 -11.36600 -11.14364 -11.03498 -10.96285 -10.92724 -10.78267 -10.68240 -9.67521 -9.27499 -8.84805 -7.78871 -5.19707 1.04611 1.42757 1.45564 1.46929 1.55712 1.91734 2.20756 2.30680 2.49683 3.23850 3.32376 3.54344 3.67400 3.72399 3.80435 3.87954 3.91007 3.96279 4.03280 4.11510 4.19517 4.26190 4.46891 4.50779 4.57591 4.61055 4.63333 4.67871 4.70244 4.74742 4.75526 4.78504 4.84897 4.93625 4.96825 5.06649 5.07391 5.14126 5.16553 5.18850 5.21810 5.24498 5.29314 5.46500 5.56914 5.63374 5.68845 5.77496 5.86741 6.30855 6.38433 6.58220 7.07670 7.13316 7.14455 7.83406 8.44756 9.24702 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.002955 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.185906 B = 9473.059429 C = 9830.651581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.005 3.995 3 C -0.123 4.123 4 C 0.534 3.466 5 O -0.572 6.572 6 N -0.596 5.596 7 C 0.114 3.886 8 C -0.114 4.114 9 C -0.079 4.079 10 H 0.096 0.904 11 C 0.134 3.866 12 N -0.625 5.625 13 C -0.243 4.243 14 H 0.077 0.923 15 C -0.064 4.064 16 N -0.946 5.946 17 Si 0.977 3.023 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.180 3.820 22 C -0.095 4.095 23 H 0.073 0.927 24 C -0.116 4.116 25 C 0.114 3.886 26 C -0.012 4.012 27 C -0.033 4.033 28 N -0.531 5.531 29 C 0.203 3.797 30 N -0.546 5.546 31 H 0.437 0.563 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.246 0.754 45 H 0.051 0.949 46 H -0.019 1.019 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.108 0.892 50 H 0.087 0.913 51 H 0.150 0.850 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 12.623 -14.235 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.001 3.999 3 C -0.180 4.180 4 C 0.322 3.678 5 O -0.452 6.452 6 N -0.327 5.327 7 C -0.010 4.010 8 C -0.152 4.152 9 C -0.098 4.098 10 H 0.114 0.886 11 C 0.009 3.991 12 N -0.351 5.351 13 C -0.372 4.372 14 H 0.095 0.905 15 C -0.257 4.257 16 N -0.596 5.596 17 Si 0.805 3.195 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.195 1.195 21 C 0.055 3.945 22 C -0.114 4.114 23 H 0.091 0.909 24 C -0.155 4.155 25 C -0.007 4.007 26 C -0.129 4.129 27 C -0.181 4.181 28 N -0.250 5.250 29 C -0.081 4.081 30 N -0.150 5.150 31 H 0.279 0.721 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.069 0.931 46 H -0.001 1.001 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.125 0.875 50 H 0.105 0.895 51 H 0.167 0.833 52 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 13.330 12.265 -14.062 22.931 hybrid contribution -1.901 0.205 1.208 2.261 sum 11.429 12.470 -12.854 21.245 Atomic orbital electron populations 1.22201 0.90362 1.04434 1.04177 1.19128 0.97804 0.95767 0.87233 1.21690 1.01351 0.91684 1.03309 1.20447 0.78938 0.80926 0.87480 1.90675 1.39341 1.66352 1.48816 1.47944 1.56086 1.10192 1.18517 1.20549 0.96458 0.97014 0.86932 1.21340 0.98059 0.96127 0.99678 1.21755 0.97607 0.95634 0.94779 0.88598 1.21356 0.84086 0.97135 0.96487 1.44532 1.01866 1.55473 1.33218 1.19444 0.86930 1.22153 1.08675 0.90483 1.25591 0.99202 1.01284 0.99600 1.70138 1.16953 1.43991 1.28504 0.85102 0.78747 0.78286 0.77340 1.21546 1.21786 1.19545 1.21168 0.93798 0.91298 0.88224 1.22257 0.95270 0.97293 0.96618 0.90865 1.21725 0.97335 0.96097 1.00307 1.22653 0.90380 0.96046 0.91652 1.20437 1.04161 1.02250 0.86047 1.22067 1.01732 0.99153 0.95145 1.70295 1.24753 1.27615 1.02383 1.25785 0.93012 0.89407 0.99933 1.43067 1.36035 1.30963 1.04935 0.72129 0.91991 0.90873 0.88575 0.91700 0.93032 0.89433 0.90318 0.90744 0.90723 0.92957 0.95977 0.96260 0.94448 0.93086 1.00089 0.91080 0.91835 0.87455 0.89480 0.83292 0.73523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.18 71.98 0.59 -1.84 16 2 C 0.01 0.10 0.73 -53.67 -0.04 0.06 16 3 C -0.12 -2.03 7.78 71.98 0.56 -1.47 16 4 C 0.53 13.68 5.64 87.66 0.49 14.18 16 5 O -0.57 -18.57 15.45 -3.03 -0.05 -18.61 16 6 N -0.60 -14.43 2.08 -824.78 -1.72 -16.15 16 7 C 0.11 2.88 5.74 86.51 0.50 3.38 16 8 C -0.11 -3.32 4.77 29.57 0.14 -3.18 16 9 C -0.08 -2.52 2.78 -10.30 -0.03 -2.55 16 10 H 0.10 2.57 7.68 -2.39 -0.02 2.55 16 11 C 0.13 5.54 6.82 86.49 0.59 6.13 16 12 N -0.63 -32.41 3.38 -698.53 -2.36 -34.76 16 13 C -0.24 -13.82 10.25 84.03 0.86 -12.96 16 14 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 15 C -0.06 -3.65 5.48 84.86 0.47 -3.19 16 16 N -0.95 -56.30 10.16 21.65 0.22 -56.08 16 17 Si 0.98 45.95 29.55 68.60 2.03 47.97 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.18 8.71 5.13 86.70 0.44 9.15 16 22 C -0.09 -3.28 2.93 -9.86 -0.03 -3.31 16 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 24 C -0.12 -3.22 3.18 30.01 0.10 -3.13 16 25 C 0.11 2.53 3.64 85.58 0.31 2.84 16 26 C -0.01 -0.20 3.87 40.95 0.16 -0.04 16 27 C -0.03 -0.72 8.78 83.52 0.73 0.02 16 28 N -0.53 -11.24 11.25 -200.31 -2.25 -13.49 16 29 C 0.20 2.45 13.04 180.26 2.35 4.80 16 30 N -0.55 -5.44 6.13 -186.48 -1.14 -6.58 16 31 H 0.44 1.25 8.96 -92.71 -0.83 0.42 16 32 H 0.06 1.13 8.13 -2.39 -0.02 1.12 16 33 H 0.07 1.28 4.00 -2.39 -0.01 1.27 16 34 H 0.10 0.89 8.13 -2.39 -0.02 0.87 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.04 7.98 -2.39 -0.02 1.02 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.08 1.74 7.68 -2.39 -0.02 1.72 16 39 H 0.07 2.04 7.01 -2.39 -0.02 2.02 16 40 H 0.07 2.14 7.53 -2.39 -0.02 2.12 16 41 H 0.05 1.78 5.87 -2.39 -0.01 1.76 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.02 0.80 7.40 -2.38 -0.02 0.79 16 44 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.05 2.84 6.19 -2.39 -0.01 2.83 16 46 H -0.02 -1.01 7.72 -2.39 -0.02 -1.03 16 47 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 48 H 0.06 1.97 5.47 -2.39 -0.01 1.96 16 49 H 0.11 2.13 3.33 -2.39 -0.01 2.13 16 50 H 0.09 1.91 7.80 -2.39 -0.02 1.89 16 51 H 0.15 3.65 6.92 -2.91 -0.02 3.63 16 52 H 0.25 0.71 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -76.31 380.43 3.04 -73.27 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.11 Total: 15.54 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 8.19 Total: 8.89 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -7.25 Total: -127.07 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.61 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.31 3.04 -73.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946859424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.699 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds