Wall clock time and date at job start Wed Apr 1 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34947 * 126.03575 * 2 1 4 4 C 1.35318 * 107.74824 * 180.20827 * 3 2 1 5 5 C 1.50693 * 126.04213 * 179.77376 * 4 3 2 6 6 C 1.53004 * 109.47262 * 5.47467 * 5 4 3 7 7 C 1.52997 * 109.47278 * 125.47887 * 5 4 3 8 8 C 1.50697 * 109.47072 * 245.47875 * 5 4 3 9 9 O 1.21284 * 119.99961 * 5.56289 * 8 5 4 10 10 N 1.34777 * 120.00353 * 185.56333 * 8 5 4 11 11 C 1.46499 * 120.00491 * 179.97438 * 10 8 5 12 12 C 1.53952 * 113.57972 * 252.72038 * 11 10 8 13 13 C 1.52906 * 86.77965 * 220.65878 * 12 11 10 14 14 C 1.52914 * 121.12932 * 150.61643 * 13 12 11 15 15 C 1.53950 * 86.78296 * 100.82816 * 14 13 12 16 16 N 1.46499 * 113.58428 * 139.33513 * 15 14 13 17 17 C 1.36938 * 119.99801 * 107.27346 * 16 15 14 18 18 H 1.07997 * 119.99962 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99871 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99907 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00305 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46976 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47359 * 119.99718 * 21 19 17 24 24 H 1.48502 * 109.47245 * 240.00010 * 21 19 17 25 25 C 1.52901 * 121.14175 * 259.17406 * 13 12 11 26 26 C 1.52910 * 88.04451 * 24.90207 * 13 12 11 27 27 C 1.39871 * 107.91393 * 359.64382 * 4 3 2 28 28 N 1.30836 * 108.20769 * 0.35874 * 27 4 3 29 29 H 1.08995 * 109.47046 * 89.99901 * 1 2 3 30 30 H 1.09001 * 109.46666 * 209.99954 * 1 2 3 31 31 H 1.08998 * 109.46647 * 329.99546 * 1 2 3 32 32 H 1.08007 * 126.12638 * 359.94353 * 3 2 1 33 33 H 1.09004 * 109.46745 * 59.99993 * 6 5 4 34 34 H 1.09003 * 109.46992 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47422 * 300.00394 * 6 5 4 36 36 H 1.09000 * 109.47221 * 60.00084 * 7 5 4 37 37 H 1.09003 * 109.47143 * 180.02562 * 7 5 4 38 38 H 1.08998 * 109.47079 * 299.99714 * 7 5 4 39 39 H 0.97006 * 119.99672 * 359.97438 * 10 8 5 40 40 H 1.09004 * 112.82280 * 23.90982 * 11 10 8 41 41 H 1.08995 * 113.66154 * 335.13620 * 12 11 10 42 42 H 1.09001 * 113.65736 * 106.18947 * 12 11 10 43 43 H 1.09006 * 113.65916 * 215.29486 * 14 13 12 44 44 H 1.08996 * 113.66532 * 346.35063 * 14 13 12 45 45 H 1.09010 * 113.57201 * 270.12723 * 15 14 13 46 46 H 0.96993 * 120.00126 * 287.27909 * 16 15 14 47 47 H 0.97002 * 120.00036 * 179.97438 * 20 19 17 48 48 H 1.09008 * 113.66118 * 13.65921 * 25 13 12 49 49 H 1.08997 * 113.66268 * 144.61653 * 25 13 12 50 50 H 1.08998 * 113.66025 * 220.62546 * 26 13 12 51 51 H 1.09001 * 113.74638 * 89.57895 * 26 13 12 52 52 H 1.08003 * 125.89618 * 180.14249 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6666 -0.0047 5 6 4.7680 1.5454 -0.0112 6 6 4.3455 3.0095 0.1258 7 6 5.6754 1.1645 1.1602 8 6 5.5145 1.3572 -1.3067 9 8 5.0430 0.6639 -2.1831 10 7 6.7060 1.9592 -1.4915 11 6 7.4321 1.7758 -2.7507 12 6 8.6692 0.8687 -2.6217 13 6 9.3812 1.8536 -3.5496 14 6 10.8925 2.0698 -3.4631 15 6 11.0075 1.1460 -4.6893 16 7 11.9947 1.5976 -5.6729 17 6 13.1824 0.9295 -5.8073 18 1 13.3911 0.0694 -5.1885 19 6 14.1180 1.3577 -6.7390 20 7 13.8638 2.4063 -7.4928 21 14 15.7379 0.4459 -6.9229 22 1 15.7783 -0.6894 -5.9666 23 1 15.8603 -0.0711 -8.3096 24 1 16.8628 1.3730 -6.6392 25 6 9.5628 1.5488 -5.0369 26 6 8.4006 2.9272 -3.0764 27 6 3.5347 -0.7320 0.0006 28 7 2.2892 -1.1328 0.0004 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.9281 2.1194 -0.0009 33 1 3.8055 3.1457 1.0629 34 1 5.2311 3.6451 0.1215 35 1 3.6991 3.2809 -0.7087 36 1 5.9764 0.1215 1.0626 37 1 6.5607 1.8005 1.1558 38 1 5.1355 1.3007 2.0973 39 1 7.0830 2.5140 -0.7907 40 1 6.7781 1.5081 -3.5806 41 1 9.0854 0.8370 -1.6148 42 1 8.5328 -0.1215 -3.0565 43 1 11.1994 3.0972 -3.6592 44 1 11.3426 1.6568 -2.5604 45 1 11.1165 0.0922 -4.4324 46 1 11.8071 2.3700 -6.2289 47 1 14.5178 2.7058 -8.1437 48 1 8.9507 0.7194 -5.3914 49 1 9.4943 2.4294 -5.6755 50 1 8.0498 3.5815 -3.8745 51 1 8.7402 3.4752 -2.1975 52 1 4.4055 -1.3709 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965669622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:53 Heat of formation + Delta-G solvation = 93.157879 kcal Electronic energy + Delta-G solvation = -30023.295945 eV Core-core repulsion = 26026.207456 eV Total energy + Delta-G solvation = -3997.088489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 8.13 seconds Orbital eigenvalues (eV) -41.69503 -40.51394 -39.31855 -35.98262 -35.58328 -33.64062 -33.14352 -31.97298 -29.82992 -29.39829 -27.81725 -26.82868 -25.72637 -25.22521 -24.60173 -23.77050 -22.39490 -21.19413 -20.92435 -20.11390 -19.37075 -17.81072 -17.51818 -16.95974 -16.71260 -16.20164 -15.64643 -15.31021 -14.99890 -14.72193 -14.65768 -14.47424 -14.23778 -14.01229 -13.50443 -13.39027 -13.15502 -12.98675 -12.87392 -12.71732 -12.60282 -12.49028 -12.47073 -12.31827 -12.07332 -11.91047 -11.63679 -11.44258 -11.27179 -10.97374 -10.84647 -10.72198 -10.67583 -10.30834 -10.02473 -9.78446 -9.72988 -9.69030 -9.61483 -9.30482 -8.97536 -8.83506 -8.63023 -6.91946 -5.75638 -3.03781 1.63684 2.25844 2.51726 2.59061 3.23383 3.44362 3.50222 3.52351 4.13641 4.36687 4.46429 4.55310 4.59425 4.62675 4.66007 4.75010 4.75465 4.79695 4.84331 4.94994 4.99818 5.05721 5.18078 5.33027 5.37375 5.42086 5.44092 5.49201 5.53513 5.60939 5.70588 5.76373 5.77366 5.83985 5.91794 5.95946 5.99312 6.03116 6.17879 6.24485 6.27713 6.39568 6.40836 6.46780 6.58785 6.68391 6.72511 6.97706 7.17932 7.46312 7.47603 7.73065 8.20166 8.43381 9.54396 10.13574 10.47912 11.46981 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028240 B = 0.001694 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.265843 B =16528.019834 C =16758.602326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.061 3.939 4 C -0.208 4.208 5 C -0.002 4.002 6 C -0.141 4.141 7 C -0.137 4.137 8 C 0.521 3.479 9 O -0.530 6.530 10 N -0.718 5.718 11 C 0.124 3.876 12 C -0.124 4.124 13 C -0.101 4.101 14 C -0.148 4.148 15 C 0.168 3.832 16 N -0.714 5.714 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.129 4.129 26 C -0.130 4.130 27 C 0.075 3.925 28 N -0.299 5.299 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.171 0.829 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.060 0.940 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.468 2.304 21.390 34.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.161 5.161 3 C -0.085 4.085 4 C -0.220 4.220 5 C -0.006 4.006 6 C -0.199 4.199 7 C -0.195 4.195 8 C 0.306 3.694 9 O -0.405 6.405 10 N -0.369 5.369 11 C 0.020 3.980 12 C -0.162 4.162 13 C -0.102 4.102 14 C -0.189 4.189 15 C 0.056 3.944 16 N -0.352 5.352 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.168 4.168 26 C -0.169 4.169 27 C -0.112 4.112 28 N -0.120 5.120 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.189 0.811 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.219 0.781 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.090 0.910 51 H 0.101 0.899 52 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -27.621 0.651 20.715 34.532 hybrid contribution 1.564 0.884 -0.063 1.798 sum -26.057 1.535 20.652 33.284 Atomic orbital electron populations 1.21828 0.74329 1.04301 1.03392 1.48378 1.06523 1.03876 1.57322 1.22213 0.90717 0.93247 1.02354 1.19361 0.92792 0.93501 1.16337 1.19012 0.92551 0.95524 0.93537 1.21881 1.02300 0.93001 1.02677 1.21866 0.98511 1.02280 0.96839 1.20533 0.80865 0.79230 0.88758 1.90714 1.67414 1.38163 1.44221 1.46079 1.20785 1.51451 1.18611 1.22599 0.91386 0.97319 0.86741 1.23131 0.95182 0.98322 0.99610 1.22067 0.95462 0.95951 0.96763 1.23631 0.92227 1.02017 1.01060 1.21543 0.87469 0.96032 0.89340 1.42424 1.15769 1.34917 1.42045 1.19368 0.93209 1.08738 1.15888 0.91056 1.24756 0.98886 0.98380 0.99021 1.69673 1.35703 1.26642 1.26142 0.86125 0.83888 0.78843 0.77395 1.20540 1.21893 1.21900 1.23206 0.99384 1.01162 0.93036 1.23170 0.95960 0.96425 1.01301 1.23612 0.94984 0.94393 0.98180 1.77369 1.01619 1.08108 1.24926 0.90793 0.89354 0.89603 0.81149 0.91215 0.91613 0.91962 0.91834 0.91898 0.91343 0.76791 0.87020 0.89886 0.91057 0.90352 0.92751 0.90816 0.78140 0.93578 0.92118 0.90088 0.90988 0.89942 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.47 59.85 0.69 1.18 16 2 N -0.38 -3.50 4.01 -68.16 -0.27 -3.77 16 3 C 0.06 0.51 10.45 -17.22 -0.18 0.33 16 4 C -0.21 -2.00 4.14 -105.06 -0.43 -2.44 16 5 C 0.00 -0.01 0.81 -156.82 -0.13 -0.14 16 6 C -0.14 -0.77 7.37 37.16 0.27 -0.49 16 7 C -0.14 -0.83 8.16 37.16 0.30 -0.53 16 8 C 0.52 5.72 6.44 -10.99 -0.07 5.65 16 9 O -0.53 -8.25 15.31 5.55 0.09 -8.16 16 10 N -0.72 -6.72 5.19 -52.85 -0.27 -7.00 16 11 C 0.12 1.43 4.24 -66.95 -0.28 1.14 16 12 C -0.12 -1.53 7.64 -26.28 -0.20 -1.73 16 13 C -0.10 -1.41 1.11 -154.72 -0.17 -1.58 16 14 C -0.15 -2.51 7.64 -26.28 -0.20 -2.71 16 15 C 0.17 3.35 4.48 -66.95 -0.30 3.05 16 16 N -0.71 -18.03 5.40 -52.47 -0.28 -18.31 16 17 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 C -0.13 -2.15 7.59 -26.29 -0.20 -2.35 16 26 C -0.13 -1.48 7.59 -26.28 -0.20 -1.68 16 27 C 0.07 0.84 11.04 -17.37 -0.19 0.65 16 28 N -0.30 -3.62 12.58 30.63 0.39 -3.24 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.17 0.85 7.27 -52.48 -0.38 0.47 16 33 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 34 H 0.06 0.29 7.97 -51.93 -0.41 -0.13 16 35 H 0.06 0.37 7.74 -51.93 -0.40 -0.03 16 36 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 37 H 0.06 0.29 7.27 -51.93 -0.38 -0.09 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.40 2.66 7.64 -40.82 -0.31 2.35 16 40 H 0.11 1.53 7.47 -51.93 -0.39 1.14 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.49 8.10 -51.92 -0.42 1.07 16 46 H 0.38 10.29 7.92 -40.82 -0.32 9.97 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 49 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 52 H 0.18 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 421.32 15.07 6.35 6.35 Total: -1.00 -35.66 421.32 -8.74 -44.41 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.89 Total: 8.91 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.54 Total: -9.07 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.28 Total: -59.92 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.66 -8.74 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965669622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.564 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.13 seconds