Wall clock time and date at job start Wed Apr 1 2020 05:23:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.34947 * 126.03575 * 2 1
4 4 C 1.35318 * 107.74824 * 180.20827 * 3 2 1
5 5 C 1.50693 * 126.04213 * 179.77376 * 4 3 2
6 6 C 1.53004 * 109.47262 * 5.47467 * 5 4 3
7 7 C 1.52997 * 109.47278 * 125.47887 * 5 4 3
8 8 C 1.50697 * 109.47072 * 245.47875 * 5 4 3
9 9 O 1.21284 * 119.99961 * 5.56289 * 8 5 4
10 10 N 1.34777 * 120.00353 * 185.56333 * 8 5 4
11 11 C 1.46499 * 120.00491 * 179.97438 * 10 8 5
12 12 C 1.53952 * 113.57972 * 252.72038 * 11 10 8
13 13 C 1.52906 * 86.77965 * 220.65878 * 12 11 10
14 14 C 1.52914 * 121.12932 * 150.61643 * 13 12 11
15 15 C 1.53950 * 86.78296 * 100.82816 * 14 13 12
16 16 N 1.46499 * 113.58428 * 139.33513 * 15 14 13
17 17 C 1.36938 * 119.99801 * 107.27346 * 16 15 14
18 18 H 1.07997 * 119.99962 * 0.02562 * 17 16 15
19 19 C 1.38808 * 119.99871 * 180.02562 * 17 16 15
20 20 N 1.31622 * 119.99907 * 0.02562 * 19 17 16
21 21 Si 1.86796 * 120.00305 * 180.02562 * 19 17 16
22 22 H 1.48505 * 109.46976 * 0.02562 * 21 19 17
23 23 H 1.48499 * 109.47359 * 119.99718 * 21 19 17
24 24 H 1.48502 * 109.47245 * 240.00010 * 21 19 17
25 25 C 1.52901 * 121.14175 * 259.17406 * 13 12 11
26 26 C 1.52910 * 88.04451 * 24.90207 * 13 12 11
27 27 C 1.39871 * 107.91393 * 359.64382 * 4 3 2
28 28 N 1.30836 * 108.20769 * 0.35874 * 27 4 3
29 29 H 1.08995 * 109.47046 * 89.99901 * 1 2 3
30 30 H 1.09001 * 109.46666 * 209.99954 * 1 2 3
31 31 H 1.08998 * 109.46647 * 329.99546 * 1 2 3
32 32 H 1.08007 * 126.12638 * 359.94353 * 3 2 1
33 33 H 1.09004 * 109.46745 * 59.99993 * 6 5 4
34 34 H 1.09003 * 109.46992 * 179.97438 * 6 5 4
35 35 H 1.08994 * 109.47422 * 300.00394 * 6 5 4
36 36 H 1.09000 * 109.47221 * 60.00084 * 7 5 4
37 37 H 1.09003 * 109.47143 * 180.02562 * 7 5 4
38 38 H 1.08998 * 109.47079 * 299.99714 * 7 5 4
39 39 H 0.97006 * 119.99672 * 359.97438 * 10 8 5
40 40 H 1.09004 * 112.82280 * 23.90982 * 11 10 8
41 41 H 1.08995 * 113.66154 * 335.13620 * 12 11 10
42 42 H 1.09001 * 113.65736 * 106.18947 * 12 11 10
43 43 H 1.09006 * 113.65916 * 215.29486 * 14 13 12
44 44 H 1.08996 * 113.66532 * 346.35063 * 14 13 12
45 45 H 1.09010 * 113.57201 * 270.12723 * 15 14 13
46 46 H 0.96993 * 120.00126 * 287.27909 * 16 15 14
47 47 H 0.97002 * 120.00036 * 179.97438 * 20 19 17
48 48 H 1.09008 * 113.66118 * 13.65921 * 25 13 12
49 49 H 1.08997 * 113.66268 * 144.61653 * 25 13 12
50 50 H 1.08998 * 113.66025 * 220.62546 * 26 13 12
51 51 H 1.09001 * 113.74638 * 89.57895 * 26 13 12
52 52 H 1.08003 * 125.89618 * 180.14249 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2589 1.0912 0.0000
4 6 3.5438 0.6666 -0.0047
5 6 4.7680 1.5454 -0.0112
6 6 4.3455 3.0095 0.1258
7 6 5.6754 1.1645 1.1602
8 6 5.5145 1.3572 -1.3067
9 8 5.0430 0.6639 -2.1831
10 7 6.7060 1.9592 -1.4915
11 6 7.4321 1.7758 -2.7507
12 6 8.6692 0.8687 -2.6217
13 6 9.3812 1.8536 -3.5496
14 6 10.8925 2.0698 -3.4631
15 6 11.0075 1.1460 -4.6893
16 7 11.9947 1.5976 -5.6729
17 6 13.1824 0.9295 -5.8073
18 1 13.3911 0.0694 -5.1885
19 6 14.1180 1.3577 -6.7390
20 7 13.8638 2.4063 -7.4928
21 14 15.7379 0.4459 -6.9229
22 1 15.7783 -0.6894 -5.9666
23 1 15.8603 -0.0711 -8.3096
24 1 16.8628 1.3730 -6.6392
25 6 9.5628 1.5488 -5.0369
26 6 8.4006 2.9272 -3.0764
27 6 3.5347 -0.7320 0.0006
28 7 2.2892 -1.1328 0.0004
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5138
31 1 -0.3632 0.8900 0.5139
32 1 1.9281 2.1194 -0.0009
33 1 3.8055 3.1457 1.0629
34 1 5.2311 3.6451 0.1215
35 1 3.6991 3.2809 -0.7087
36 1 5.9764 0.1215 1.0626
37 1 6.5607 1.8005 1.1558
38 1 5.1355 1.3007 2.0973
39 1 7.0830 2.5140 -0.7907
40 1 6.7781 1.5081 -3.5806
41 1 9.0854 0.8370 -1.6148
42 1 8.5328 -0.1215 -3.0565
43 1 11.1994 3.0972 -3.6592
44 1 11.3426 1.6568 -2.5604
45 1 11.1165 0.0922 -4.4324
46 1 11.8071 2.3700 -6.2289
47 1 14.5178 2.7058 -8.1437
48 1 8.9507 0.7194 -5.3914
49 1 9.4943 2.4294 -5.6755
50 1 8.0498 3.5815 -3.8745
51 1 8.7402 3.4752 -2.1975
52 1 4.4055 -1.3709 0.0009
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000965669622.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:23:51
Heat of formation + Delta-G solvation = 69.503803 kcal
Electronic energy + Delta-G solvation = -30024.321663 eV
Core-core repulsion = 26026.207456 eV
Total energy + Delta-G solvation = -3998.114207 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.60 seconds
Orbital eigenvalues (eV)
-42.37965 -41.58238 -40.29896 -37.24905 -36.36292 -35.20100 -33.91722 -33.24562
-31.37382 -30.32997 -28.25372 -27.33020 -26.72505 -26.65177 -26.11270 -25.01182
-23.41180 -22.02485 -21.71305 -21.40447 -20.18334 -19.40198 -18.58641 -18.20154
-17.49358 -17.04697 -16.86347 -16.25912 -16.02771 -16.01766 -15.68764 -15.47039
-15.22535 -15.05519 -14.84659 -14.35118 -14.07288 -13.62657 -13.59837 -13.56759
-13.47116 -13.39611 -13.26228 -13.11297 -13.04252 -12.94242 -12.91677 -12.83923
-12.44089 -12.30549 -12.21104 -12.03645 -11.94749 -11.87188 -11.38531 -11.32880
-11.03314 -10.81976 -10.79156 -10.50440 -10.32288 -9.89048 -9.29396 -8.95921
-7.94180 -5.22033 0.98298 1.47350 1.48118 1.58202 1.71502 1.76191
1.78420 2.45504 2.56923 3.37519 3.54145 3.56807 3.59233 3.70991
3.78734 3.91305 3.98278 4.02170 4.07715 4.18028 4.27388 4.29946
4.36571 4.41825 4.44383 4.56117 4.63600 4.69633 4.81296 4.84118
4.85723 4.86883 4.90742 4.95728 4.97595 5.02405 5.06404 5.09345
5.12530 5.17021 5.18643 5.30736 5.36280 5.44246 5.46312 5.59260
5.67790 5.71509 5.73325 6.18967 6.28673 6.72078 6.75661 7.34172
7.41709 8.12242 8.35249 9.29449
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.028240 B = 0.001694 C = 0.001670
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 991.265843 B =16528.019834 C =16758.602326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.093 3.907
2 N -0.382 5.382
3 C 0.066 3.934
4 C -0.225 4.225
5 C 0.006 3.994
6 C -0.139 4.139
7 C -0.136 4.136
8 C 0.519 3.481
9 O -0.582 6.582
10 N -0.703 5.703
11 C 0.131 3.869
12 C -0.119 4.119
13 C -0.090 4.090
14 C -0.136 4.136
15 C 0.145 3.855
16 N -0.729 5.729
17 C -0.242 4.242
18 H 0.075 0.925
19 C -0.078 4.078
20 N -0.970 5.970
21 Si 0.972 3.028
22 H -0.266 1.266
23 H -0.295 1.295
24 H -0.292 1.292
25 C -0.124 4.124
26 C -0.115 4.115
27 C 0.054 3.946
28 N -0.342 5.342
29 H 0.078 0.922
30 H 0.088 0.912
31 H 0.120 0.880
32 H 0.207 0.793
33 H 0.090 0.910
34 H 0.081 0.919
35 H 0.056 0.944
36 H 0.049 0.951
37 H 0.082 0.918
38 H 0.080 0.920
39 H 0.415 0.585
40 H 0.088 0.912
41 H 0.102 0.898
42 H 0.057 0.943
43 H 0.067 0.933
44 H 0.063 0.937
45 H 0.067 0.933
46 H 0.373 0.627
47 H 0.250 0.750
48 H 0.061 0.939
49 H 0.074 0.926
50 H 0.073 0.927
51 H 0.110 0.890
52 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.475 3.757 24.055 36.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.047 4.047
2 N -0.164 5.164
3 C -0.081 4.081
4 C -0.237 4.237
5 C 0.002 3.998
6 C -0.197 4.197
7 C -0.193 4.193
8 C 0.306 3.694
9 O -0.461 6.461
10 N -0.355 5.355
11 C 0.026 3.974
12 C -0.158 4.158
13 C -0.091 4.091
14 C -0.176 4.176
15 C 0.036 3.964
16 N -0.366 5.366
17 C -0.374 4.374
18 H 0.093 0.907
19 C -0.270 4.270
20 N -0.621 5.621
21 Si 0.802 3.198
22 H -0.191 1.191
23 H -0.222 1.222
24 H -0.219 1.219
25 C -0.163 4.163
26 C -0.153 4.153
27 C -0.131 4.131
28 N -0.164 5.164
29 H 0.097 0.903
30 H 0.107 0.893
31 H 0.139 0.861
32 H 0.224 0.776
33 H 0.109 0.891
34 H 0.100 0.900
35 H 0.075 0.925
36 H 0.068 0.932
37 H 0.101 0.899
38 H 0.099 0.901
39 H 0.253 0.747
40 H 0.106 0.894
41 H 0.121 0.879
42 H 0.076 0.924
43 H 0.086 0.914
44 H 0.082 0.918
45 H 0.085 0.915
46 H 0.205 0.795
47 H 0.059 0.941
48 H 0.080 0.920
49 H 0.093 0.907
50 H 0.091 0.909
51 H 0.128 0.872
52 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -28.651 2.094 23.458 37.088
hybrid contribution 1.763 0.384 -0.875 2.005
sum -26.888 2.478 22.583 35.200
Atomic orbital electron populations
1.22177 0.72145 1.06098 1.04259 1.48751 1.07859 1.03414 1.56412
1.22805 0.90248 0.94449 1.00579 1.19652 0.94206 0.92933 1.16909
1.19029 0.91780 0.96968 0.92054 1.21926 1.03221 0.90977 1.03553
1.21884 0.99054 1.01856 0.96504 1.21179 0.80872 0.78055 0.89284
1.90698 1.68713 1.40476 1.46238 1.45899 1.20214 1.51175 1.18210
1.22263 0.90902 0.97095 0.87139 1.23166 0.95266 0.97398 0.99976
1.21885 0.94094 0.98307 0.94786 1.23377 0.94523 1.00332 0.99395
1.21928 0.88090 0.96362 0.90036 1.42604 1.16197 1.34602 1.43239
1.19751 0.94085 1.08455 1.15152 0.90678 1.25559 1.02405 0.99614
0.99375 1.69825 1.36737 1.28435 1.27138 0.85085 0.79690 0.77899
0.77174 1.19077 1.22208 1.21941 1.23080 0.97023 1.00871 0.95334
1.23135 0.94202 0.95755 1.02241 1.23741 0.94865 0.95680 0.98806
1.77270 1.02404 1.10167 1.26583 0.90347 0.89300 0.86146 0.77605
0.89110 0.90036 0.92512 0.93226 0.89926 0.90136 0.74722 0.89379
0.87919 0.92388 0.91441 0.91792 0.91460 0.79488 0.94074 0.92018
0.90735 0.90852 0.87208 0.81058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.74 11.47 127.77 1.47 2.20 16
2 N -0.38 -6.67 4.01 -369.55 -1.48 -8.15 16
3 C 0.07 0.97 10.45 83.54 0.87 1.84 16
4 C -0.23 -4.10 4.14 -20.15 -0.08 -4.18 16
5 C 0.01 0.08 0.81 -53.68 -0.04 0.04 16
6 C -0.14 -1.00 7.37 71.98 0.53 -0.47 16
7 C -0.14 -1.30 8.16 71.98 0.59 -0.71 16
8 C 0.52 10.69 6.44 87.66 0.56 11.25 16
9 O -0.58 -18.27 15.31 -3.04 -0.05 -18.32 16
10 N -0.70 -11.40 5.19 -439.51 -2.28 -13.67 16
11 C 0.13 2.80 4.24 45.63 0.19 2.99 16
12 C -0.12 -2.75 7.64 30.88 0.24 -2.51 16
13 C -0.09 -2.36 1.11 -52.32 -0.06 -2.42 16
14 C -0.14 -4.44 7.64 30.89 0.24 -4.20 16
15 C 0.15 5.83 4.48 45.63 0.20 6.03 16
16 N -0.73 -37.55 5.40 -319.93 -1.73 -39.28 16
17 C -0.24 -13.72 9.97 84.03 0.84 -12.89 16
18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16
19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16
20 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16
21 Si 0.97 46.76 29.55 68.60 2.03 48.79 16
22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16
24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
25 C -0.12 -4.15 7.59 30.88 0.23 -3.91 16
26 C -0.12 -2.31 7.59 30.89 0.23 -2.07 16
27 C 0.05 1.26 11.04 85.24 0.94 2.21 16
28 N -0.34 -8.48 12.58 -57.02 -0.72 -9.19 16
29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
31 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16
32 H 0.21 1.29 7.27 -2.91 -0.02 1.27 16
33 H 0.09 0.31 8.10 -2.39 -0.02 0.29 16
34 H 0.08 0.34 7.97 -2.39 -0.02 0.32 16
35 H 0.06 0.49 7.74 -2.39 -0.02 0.48 16
36 H 0.05 0.62 7.93 -2.39 -0.02 0.60 16
37 H 0.08 0.45 7.27 -2.39 -0.02 0.43 16
38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16
39 H 0.41 3.89 7.64 -92.70 -0.71 3.18 16
40 H 0.09 2.38 7.47 -2.38 -0.02 2.36 16
41 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16
42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
43 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16
44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
45 H 0.07 2.75 8.10 -2.38 -0.02 2.73 16
46 H 0.37 20.59 7.92 -92.71 -0.73 19.85 16
47 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16
48 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16
49 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16
50 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
51 H 0.11 1.67 8.12 -2.39 -0.02 1.65 16
52 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16
Total: -1.00 -80.66 421.32 2.95 -77.71
By element:
Atomic # 1 Polarization: 33.39 SS G_CDS: -0.52 Total: 32.87 kcal
Atomic # 6 Polarization: -18.28 SS G_CDS: 7.42 Total: -10.86 kcal
Atomic # 7 Polarization: -124.27 SS G_CDS: -5.92 Total: -130.19 kcal
Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal
Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal
Total: -80.66 2.95 -77.71 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000965669622.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.210 kcal
(2) G-P(sol) polarization free energy of solvation -80.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.550 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.504 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.60 seconds