Wall clock time and date at job start Wed Apr 1 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34947 * 126.03575 * 2 1 4 4 C 1.35318 * 107.74824 * 180.20827 * 3 2 1 5 5 C 1.50693 * 126.04213 * 179.77376 * 4 3 2 6 6 C 1.53004 * 109.47262 * 5.47467 * 5 4 3 7 7 C 1.52997 * 109.47278 * 125.47887 * 5 4 3 8 8 C 1.50697 * 109.47072 * 245.47875 * 5 4 3 9 9 O 1.21284 * 119.99961 * 5.56289 * 8 5 4 10 10 N 1.34777 * 120.00353 * 185.56333 * 8 5 4 11 11 C 1.46499 * 120.00491 * 179.97438 * 10 8 5 12 12 C 1.53952 * 113.57972 * 252.72038 * 11 10 8 13 13 C 1.52906 * 86.77965 * 220.65878 * 12 11 10 14 14 C 1.52914 * 121.12932 * 150.61643 * 13 12 11 15 15 C 1.53950 * 86.78296 * 100.82816 * 14 13 12 16 16 N 1.46499 * 113.58428 * 139.33513 * 15 14 13 17 17 C 1.36938 * 119.99801 * 107.27346 * 16 15 14 18 18 H 1.07997 * 119.99962 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99871 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99907 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00305 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46976 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47359 * 119.99718 * 21 19 17 24 24 H 1.48502 * 109.47245 * 240.00010 * 21 19 17 25 25 C 1.52901 * 121.14175 * 259.17406 * 13 12 11 26 26 C 1.52910 * 88.04451 * 24.90207 * 13 12 11 27 27 C 1.39871 * 107.91393 * 359.64382 * 4 3 2 28 28 N 1.30836 * 108.20769 * 0.35874 * 27 4 3 29 29 H 1.08995 * 109.47046 * 89.99901 * 1 2 3 30 30 H 1.09001 * 109.46666 * 209.99954 * 1 2 3 31 31 H 1.08998 * 109.46647 * 329.99546 * 1 2 3 32 32 H 1.08007 * 126.12638 * 359.94353 * 3 2 1 33 33 H 1.09004 * 109.46745 * 59.99993 * 6 5 4 34 34 H 1.09003 * 109.46992 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47422 * 300.00394 * 6 5 4 36 36 H 1.09000 * 109.47221 * 60.00084 * 7 5 4 37 37 H 1.09003 * 109.47143 * 180.02562 * 7 5 4 38 38 H 1.08998 * 109.47079 * 299.99714 * 7 5 4 39 39 H 0.97006 * 119.99672 * 359.97438 * 10 8 5 40 40 H 1.09004 * 112.82280 * 23.90982 * 11 10 8 41 41 H 1.08995 * 113.66154 * 335.13620 * 12 11 10 42 42 H 1.09001 * 113.65736 * 106.18947 * 12 11 10 43 43 H 1.09006 * 113.65916 * 215.29486 * 14 13 12 44 44 H 1.08996 * 113.66532 * 346.35063 * 14 13 12 45 45 H 1.09010 * 113.57201 * 270.12723 * 15 14 13 46 46 H 0.96993 * 120.00126 * 287.27909 * 16 15 14 47 47 H 0.97002 * 120.00036 * 179.97438 * 20 19 17 48 48 H 1.09008 * 113.66118 * 13.65921 * 25 13 12 49 49 H 1.08997 * 113.66268 * 144.61653 * 25 13 12 50 50 H 1.08998 * 113.66025 * 220.62546 * 26 13 12 51 51 H 1.09001 * 113.74638 * 89.57895 * 26 13 12 52 52 H 1.08003 * 125.89618 * 180.14249 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6666 -0.0047 5 6 4.7680 1.5454 -0.0112 6 6 4.3455 3.0095 0.1258 7 6 5.6754 1.1645 1.1602 8 6 5.5145 1.3572 -1.3067 9 8 5.0430 0.6639 -2.1831 10 7 6.7060 1.9592 -1.4915 11 6 7.4321 1.7758 -2.7507 12 6 8.6692 0.8687 -2.6217 13 6 9.3812 1.8536 -3.5496 14 6 10.8925 2.0698 -3.4631 15 6 11.0075 1.1460 -4.6893 16 7 11.9947 1.5976 -5.6729 17 6 13.1824 0.9295 -5.8073 18 1 13.3911 0.0694 -5.1885 19 6 14.1180 1.3577 -6.7390 20 7 13.8638 2.4063 -7.4928 21 14 15.7379 0.4459 -6.9229 22 1 15.7783 -0.6894 -5.9666 23 1 15.8603 -0.0711 -8.3096 24 1 16.8628 1.3730 -6.6392 25 6 9.5628 1.5488 -5.0369 26 6 8.4006 2.9272 -3.0764 27 6 3.5347 -0.7320 0.0006 28 7 2.2892 -1.1328 0.0004 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.9281 2.1194 -0.0009 33 1 3.8055 3.1457 1.0629 34 1 5.2311 3.6451 0.1215 35 1 3.6991 3.2809 -0.7087 36 1 5.9764 0.1215 1.0626 37 1 6.5607 1.8005 1.1558 38 1 5.1355 1.3007 2.0973 39 1 7.0830 2.5140 -0.7907 40 1 6.7781 1.5081 -3.5806 41 1 9.0854 0.8370 -1.6148 42 1 8.5328 -0.1215 -3.0565 43 1 11.1994 3.0972 -3.6592 44 1 11.3426 1.6568 -2.5604 45 1 11.1165 0.0922 -4.4324 46 1 11.8071 2.3700 -6.2289 47 1 14.5178 2.7058 -8.1437 48 1 8.9507 0.7194 -5.3914 49 1 9.4943 2.4294 -5.6755 50 1 8.0498 3.5815 -3.8745 51 1 8.7402 3.4752 -2.1975 52 1 4.4055 -1.3709 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965669622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:51 Heat of formation + Delta-G solvation = 69.503803 kcal Electronic energy + Delta-G solvation = -30024.321663 eV Core-core repulsion = 26026.207456 eV Total energy + Delta-G solvation = -3998.114207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.37965 -41.58238 -40.29896 -37.24905 -36.36292 -35.20100 -33.91722 -33.24562 -31.37382 -30.32997 -28.25372 -27.33020 -26.72505 -26.65177 -26.11270 -25.01182 -23.41180 -22.02485 -21.71305 -21.40447 -20.18334 -19.40198 -18.58641 -18.20154 -17.49358 -17.04697 -16.86347 -16.25912 -16.02771 -16.01766 -15.68764 -15.47039 -15.22535 -15.05519 -14.84659 -14.35118 -14.07288 -13.62657 -13.59837 -13.56759 -13.47116 -13.39611 -13.26228 -13.11297 -13.04252 -12.94242 -12.91677 -12.83923 -12.44089 -12.30549 -12.21104 -12.03645 -11.94749 -11.87188 -11.38531 -11.32880 -11.03314 -10.81976 -10.79156 -10.50440 -10.32288 -9.89048 -9.29396 -8.95921 -7.94180 -5.22033 0.98298 1.47350 1.48118 1.58202 1.71502 1.76191 1.78420 2.45504 2.56923 3.37519 3.54145 3.56807 3.59233 3.70991 3.78734 3.91305 3.98278 4.02170 4.07715 4.18028 4.27388 4.29946 4.36571 4.41825 4.44383 4.56117 4.63600 4.69633 4.81296 4.84118 4.85723 4.86883 4.90742 4.95728 4.97595 5.02405 5.06404 5.09345 5.12530 5.17021 5.18643 5.30736 5.36280 5.44246 5.46312 5.59260 5.67790 5.71509 5.73325 6.18967 6.28673 6.72078 6.75661 7.34172 7.41709 8.12242 8.35249 9.29449 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028240 B = 0.001694 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.265843 B =16528.019834 C =16758.602326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.066 3.934 4 C -0.225 4.225 5 C 0.006 3.994 6 C -0.139 4.139 7 C -0.136 4.136 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.703 5.703 11 C 0.131 3.869 12 C -0.119 4.119 13 C -0.090 4.090 14 C -0.136 4.136 15 C 0.145 3.855 16 N -0.729 5.729 17 C -0.242 4.242 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.292 1.292 25 C -0.124 4.124 26 C -0.115 4.115 27 C 0.054 3.946 28 N -0.342 5.342 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.207 0.793 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.110 0.890 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.475 3.757 24.055 36.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.081 4.081 4 C -0.237 4.237 5 C 0.002 3.998 6 C -0.197 4.197 7 C -0.193 4.193 8 C 0.306 3.694 9 O -0.461 6.461 10 N -0.355 5.355 11 C 0.026 3.974 12 C -0.158 4.158 13 C -0.091 4.091 14 C -0.176 4.176 15 C 0.036 3.964 16 N -0.366 5.366 17 C -0.374 4.374 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.219 1.219 25 C -0.163 4.163 26 C -0.153 4.153 27 C -0.131 4.131 28 N -0.164 5.164 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.224 0.776 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.128 0.872 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -28.651 2.094 23.458 37.088 hybrid contribution 1.763 0.384 -0.875 2.005 sum -26.888 2.478 22.583 35.200 Atomic orbital electron populations 1.22177 0.72145 1.06098 1.04259 1.48751 1.07859 1.03414 1.56412 1.22805 0.90248 0.94449 1.00579 1.19652 0.94206 0.92933 1.16909 1.19029 0.91780 0.96968 0.92054 1.21926 1.03221 0.90977 1.03553 1.21884 0.99054 1.01856 0.96504 1.21179 0.80872 0.78055 0.89284 1.90698 1.68713 1.40476 1.46238 1.45899 1.20214 1.51175 1.18210 1.22263 0.90902 0.97095 0.87139 1.23166 0.95266 0.97398 0.99976 1.21885 0.94094 0.98307 0.94786 1.23377 0.94523 1.00332 0.99395 1.21928 0.88090 0.96362 0.90036 1.42604 1.16197 1.34602 1.43239 1.19751 0.94085 1.08455 1.15152 0.90678 1.25559 1.02405 0.99614 0.99375 1.69825 1.36737 1.28435 1.27138 0.85085 0.79690 0.77899 0.77174 1.19077 1.22208 1.21941 1.23080 0.97023 1.00871 0.95334 1.23135 0.94202 0.95755 1.02241 1.23741 0.94865 0.95680 0.98806 1.77270 1.02404 1.10167 1.26583 0.90347 0.89300 0.86146 0.77605 0.89110 0.90036 0.92512 0.93226 0.89926 0.90136 0.74722 0.89379 0.87919 0.92388 0.91441 0.91792 0.91460 0.79488 0.94074 0.92018 0.90735 0.90852 0.87208 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.47 127.77 1.47 2.20 16 2 N -0.38 -6.67 4.01 -369.55 -1.48 -8.15 16 3 C 0.07 0.97 10.45 83.54 0.87 1.84 16 4 C -0.23 -4.10 4.14 -20.15 -0.08 -4.18 16 5 C 0.01 0.08 0.81 -53.68 -0.04 0.04 16 6 C -0.14 -1.00 7.37 71.98 0.53 -0.47 16 7 C -0.14 -1.30 8.16 71.98 0.59 -0.71 16 8 C 0.52 10.69 6.44 87.66 0.56 11.25 16 9 O -0.58 -18.27 15.31 -3.04 -0.05 -18.32 16 10 N -0.70 -11.40 5.19 -439.51 -2.28 -13.67 16 11 C 0.13 2.80 4.24 45.63 0.19 2.99 16 12 C -0.12 -2.75 7.64 30.88 0.24 -2.51 16 13 C -0.09 -2.36 1.11 -52.32 -0.06 -2.42 16 14 C -0.14 -4.44 7.64 30.89 0.24 -4.20 16 15 C 0.15 5.83 4.48 45.63 0.20 6.03 16 16 N -0.73 -37.55 5.40 -319.93 -1.73 -39.28 16 17 C -0.24 -13.72 9.97 84.03 0.84 -12.89 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 21 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 C -0.12 -4.15 7.59 30.88 0.23 -3.91 16 26 C -0.12 -2.31 7.59 30.89 0.23 -2.07 16 27 C 0.05 1.26 11.04 85.24 0.94 2.21 16 28 N -0.34 -8.48 12.58 -57.02 -0.72 -9.19 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.21 1.29 7.27 -2.91 -0.02 1.27 16 33 H 0.09 0.31 8.10 -2.39 -0.02 0.29 16 34 H 0.08 0.34 7.97 -2.39 -0.02 0.32 16 35 H 0.06 0.49 7.74 -2.39 -0.02 0.48 16 36 H 0.05 0.62 7.93 -2.39 -0.02 0.60 16 37 H 0.08 0.45 7.27 -2.39 -0.02 0.43 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.41 3.89 7.64 -92.70 -0.71 3.18 16 40 H 0.09 2.38 7.47 -2.38 -0.02 2.36 16 41 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 2.75 8.10 -2.38 -0.02 2.73 16 46 H 0.37 20.59 7.92 -92.71 -0.73 19.85 16 47 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 48 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 49 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 50 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.11 1.67 8.12 -2.39 -0.02 1.65 16 52 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -80.66 421.32 2.95 -77.71 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.52 Total: 32.87 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 7.42 Total: -10.86 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -5.92 Total: -130.19 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -80.66 2.95 -77.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965669622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.210 kcal (2) G-P(sol) polarization free energy of solvation -80.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds