Wall clock time and date at job start Wed Apr 1 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47147 * 2 1 4 4 C 1.52994 * 109.47063 * 239.99797 * 2 1 3 5 5 C 1.50707 * 109.46982 * 119.99664 * 2 1 3 6 6 N 1.30448 * 125.98866 * 242.21440 * 5 2 1 7 7 N 1.39934 * 108.89245 * 180.26203 * 6 5 2 8 8 H 0.97002 * 125.74948 * 179.77038 * 7 6 5 9 9 C 1.34260 * 108.49573 * 359.75431 * 7 6 5 10 10 C 1.38047 * 107.41293 * 359.97438 * 9 7 6 11 11 C 1.47434 * 126.40932 * 179.97438 * 10 9 7 12 12 O 1.21599 * 119.99320 * 174.70610 * 11 10 9 13 13 N 1.34775 * 120.00007 * 354.70485 * 11 10 9 14 14 C 1.46503 * 119.99683 * 179.97438 * 13 11 10 15 15 C 1.53953 * 113.57733 * 154.99719 * 14 13 11 16 16 C 1.52911 * 86.77789 * 89.87084 * 15 14 13 17 17 C 1.52908 * 121.13691 * 259.17523 * 16 15 14 18 18 C 1.53948 * 86.78284 * 209.38410 * 17 16 15 19 19 N 1.46505 * 113.58101 * 139.34156 * 18 17 16 20 20 C 1.36931 * 120.00152 * 107.27970 * 19 18 17 21 21 H 1.08002 * 119.99839 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00061 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99750 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00426 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47082 * 89.99608 * 24 22 20 26 26 H 1.48494 * 109.47336 * 209.99861 * 24 22 20 27 27 H 1.48500 * 109.47006 * 329.99962 * 24 22 20 28 28 C 1.52916 * 121.13316 * 150.61716 * 16 15 14 29 29 C 1.52903 * 88.04272 * 24.89874 * 16 15 14 30 30 H 1.09005 * 109.47149 * 308.66881 * 1 2 3 31 31 H 1.08996 * 109.47104 * 68.67092 * 1 2 3 32 32 H 1.09003 * 109.47100 * 188.66821 * 1 2 3 33 33 H 1.09000 * 109.47007 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.46889 * 299.99942 * 3 2 1 35 35 H 1.09002 * 109.47127 * 59.99785 * 3 2 1 36 36 H 1.08998 * 109.47355 * 291.54771 * 4 2 1 37 37 H 1.09004 * 109.47188 * 51.55211 * 4 2 1 38 38 H 1.09000 * 109.46795 * 171.54768 * 4 2 1 39 39 H 1.07996 * 126.29081 * 179.97438 * 9 7 6 40 40 H 0.96994 * 120.00381 * 359.97438 * 13 11 10 41 41 H 1.08998 * 112.87545 * 23.86534 * 14 13 11 42 42 H 1.09004 * 113.66210 * 335.40199 * 15 14 13 43 43 H 1.08994 * 113.65931 * 204.34120 * 15 14 13 44 44 H 1.08995 * 113.66626 * 323.85919 * 17 16 15 45 45 H 1.09003 * 113.66059 * 94.91136 * 17 16 15 46 46 H 1.09002 * 113.58216 * 270.13359 * 18 17 16 47 47 H 0.96997 * 119.99483 * 287.28171 * 19 18 17 48 48 H 0.97000 * 119.99513 * 180.02562 * 23 22 20 49 49 H 1.08996 * 113.66052 * 265.08846 * 28 16 15 50 50 H 1.08993 * 113.66350 * 36.05481 * 28 16 15 51 51 H 1.09002 * 113.66193 * 89.57358 * 29 16 15 52 52 H 1.09001 * 113.66490 * 220.62384 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 7 2.7517 -0.1810 2.1813 7 7 3.0218 -1.1601 3.1439 8 1 3.5407 -1.0313 3.9532 9 6 2.4414 -2.3078 2.7584 10 6 1.8038 -2.0656 1.5582 11 6 1.0343 -3.0404 0.7637 12 8 0.4380 -2.6776 -0.2320 13 7 0.9919 -4.3336 1.1411 14 6 0.2268 -5.3021 0.3518 15 6 0.7276 -6.7503 0.5004 16 6 -0.2483 -6.8763 1.6708 17 6 0.2351 -6.7743 3.1179 18 6 -0.9329 -7.7084 3.4827 19 7 -0.5815 -8.7255 4.4769 20 6 -1.0513 -8.6210 5.7588 21 1 -1.6805 -7.7885 6.0371 22 6 -0.7178 -9.5844 6.7009 23 7 0.0495 -10.5987 6.3618 24 14 -1.3580 -9.4415 8.4500 25 1 -2.6623 -10.1432 8.5586 26 1 -0.3842 -10.0591 9.3856 27 1 -1.5366 -8.0085 8.7962 28 6 -0.8803 -8.2212 2.0320 29 6 -1.0756 -5.7598 1.0330 30 1 -0.3634 0.6421 0.8024 31 1 -0.3633 0.3738 -0.9572 32 1 -0.3633 -1.0160 0.1549 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.8053 -1.7832 -1.1769 37 1 1.5586 -0.3021 -2.1328 38 1 3.1195 -0.5923 -1.3279 39 1 2.4684 -3.2476 3.2897 40 1 1.4678 -4.6230 1.9351 41 1 0.0914 -4.9918 -0.6842 42 1 1.7748 -6.8231 0.7942 43 1 0.4787 -7.3884 -0.3474 44 1 1.2173 -7.2169 3.2833 45 1 0.1433 -5.7736 3.5402 46 1 -1.8548 -7.1797 3.7250 47 1 -0.0160 -9.4729 4.2269 48 1 0.2821 -11.2720 7.0201 49 1 -1.8630 -8.3762 1.5869 50 1 -0.2120 -9.0705 1.8907 51 1 -1.8314 -6.1197 0.3348 52 1 -1.4691 -5.0414 1.7521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965817670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:27 Heat of formation + Delta-G solvation = 65.592037 kcal Electronic energy + Delta-G solvation = -30911.746938 eV Core-core repulsion = 26913.463104 eV Total energy + Delta-G solvation = -3998.283834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.58326 -41.57917 -39.74991 -37.75517 -36.98049 -35.06167 -33.61342 -31.97462 -31.67382 -30.88103 -28.03700 -27.98402 -26.67087 -26.52383 -26.17206 -24.70600 -23.72680 -23.14149 -21.42894 -20.98198 -19.62264 -19.24262 -19.13040 -18.60385 -17.51247 -16.88281 -16.71756 -16.27577 -16.05798 -15.87467 -15.78891 -15.59010 -15.28412 -15.15945 -14.98230 -14.52493 -14.36026 -13.92473 -13.71843 -13.58529 -13.35014 -13.01378 -12.99581 -12.95867 -12.82801 -12.78810 -12.44508 -12.33914 -12.31182 -12.08584 -12.03183 -12.00296 -11.87996 -11.78107 -11.42502 -11.11602 -10.97028 -10.81710 -10.59261 -10.56483 -10.52442 -9.94977 -9.65839 -8.93924 -7.93017 -5.20199 0.55835 1.14130 1.47724 1.48979 1.57015 1.80262 2.33187 2.47538 2.57485 3.38884 3.40618 3.60322 3.64770 3.69115 3.77836 3.97308 4.04335 4.06921 4.13124 4.15843 4.34341 4.37811 4.40144 4.49018 4.52627 4.68021 4.75526 4.84936 4.86537 4.93199 4.97099 5.00679 5.02512 5.04476 5.06012 5.08293 5.12805 5.16732 5.17920 5.20870 5.25556 5.31565 5.47381 5.49784 5.56554 5.58035 5.64442 5.76379 5.88816 6.26138 6.29951 6.52135 6.74255 7.35740 7.42414 8.14910 8.37121 9.30242 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.002356 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.410145 B =11883.875431 C =13097.016925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.014 3.986 3 C -0.131 4.131 4 C -0.141 4.141 5 C 0.135 3.865 6 N -0.320 5.320 7 N -0.451 5.451 8 H 0.459 0.541 9 C 0.126 3.874 10 C -0.314 4.314 11 C 0.591 3.409 12 O -0.551 6.551 13 N -0.700 5.700 14 C 0.132 3.868 15 C -0.121 4.121 16 C -0.091 4.091 17 C -0.129 4.129 18 C 0.145 3.855 19 N -0.728 5.728 20 C -0.239 4.239 21 H 0.074 0.926 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.968 3.032 25 H -0.290 1.290 26 H -0.296 1.296 27 H -0.269 1.269 28 C -0.133 4.133 29 C -0.123 4.123 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.221 0.779 40 H 0.406 0.594 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.373 0.627 48 H 0.250 0.750 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.101 0.899 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 19.957 -14.185 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 C -0.188 4.188 4 C -0.199 4.199 5 C -0.033 4.033 6 N -0.142 5.142 7 N -0.156 5.156 8 H 0.307 0.693 9 C -0.028 4.028 10 C -0.329 4.329 11 C 0.381 3.619 12 O -0.432 6.432 13 N -0.350 5.350 14 C 0.026 3.974 15 C -0.159 4.159 16 C -0.091 4.091 17 C -0.169 4.169 18 C 0.036 3.964 19 N -0.366 5.366 20 C -0.371 4.371 21 H 0.092 0.908 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.798 3.202 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.194 1.194 28 C -0.172 4.172 29 C -0.162 4.162 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.237 0.763 40 H 0.242 0.758 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.205 0.795 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.119 0.881 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.220 21.354 -14.269 26.425 hybrid contribution 0.012 -1.486 1.853 2.375 sum 6.232 19.868 -12.416 24.243 Atomic orbital electron populations 1.22020 0.92915 1.03626 1.01425 1.19028 0.96066 0.94490 0.89208 1.21774 1.00834 0.94103 1.02104 1.22008 0.99601 1.02720 0.95553 1.22609 0.93680 0.91824 0.95233 1.77117 1.22378 1.13748 1.00953 1.46192 1.41714 1.06734 1.20966 0.69345 1.23704 0.91448 0.93188 0.94485 1.20312 1.15552 0.95939 1.01092 1.17345 0.79394 0.81536 0.83646 1.90617 1.46444 1.78535 1.27585 1.45466 1.52184 1.07118 1.30244 1.21734 0.91761 0.88238 0.95625 1.23140 0.99404 0.94941 0.98430 1.22195 0.97751 0.95145 0.94027 1.23325 0.99753 0.99997 0.93851 1.21907 0.95997 0.90562 0.87964 1.42606 1.59303 1.27422 1.07230 1.19666 1.23451 1.05953 0.87991 0.90817 1.25515 1.01656 0.97608 1.02124 1.69810 1.42727 1.14656 1.34867 0.85210 0.77009 0.77714 0.80272 1.21748 1.22312 1.19420 1.23173 1.00508 0.97029 0.96444 1.23165 0.96919 0.96470 0.99616 0.93952 0.91528 0.90620 0.92877 0.91015 0.93016 0.90763 0.91522 0.93633 0.76300 0.75788 0.88283 0.90485 0.87520 0.90967 0.91773 0.91713 0.79471 0.94131 0.91583 0.91011 0.88097 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.20 71.98 0.59 -2.46 16 2 C 0.01 0.30 0.75 -52.93 -0.04 0.26 16 3 C -0.13 -2.35 7.94 71.98 0.57 -1.78 16 4 C -0.14 -2.89 8.19 71.98 0.59 -2.30 16 5 C 0.13 2.98 5.64 43.52 0.25 3.22 16 6 N -0.32 -6.73 11.93 -46.67 -0.56 -7.29 16 7 N -0.45 -6.29 7.29 -56.32 -0.41 -6.70 16 8 H 0.46 3.22 8.96 -213.43 -1.91 1.31 16 9 C 0.13 1.72 11.52 84.28 0.97 2.69 16 10 C -0.31 -6.31 5.89 -20.15 -0.12 -6.43 16 11 C 0.59 12.98 7.20 86.67 0.62 13.60 16 12 O -0.55 -14.50 10.01 -4.03 -0.04 -14.54 16 13 N -0.70 -12.84 5.24 -442.78 -2.32 -15.16 16 14 C 0.13 2.52 4.32 45.62 0.20 2.72 16 15 C -0.12 -2.24 7.59 30.89 0.23 -2.00 16 16 C -0.09 -2.10 1.02 -52.31 -0.05 -2.16 16 17 C -0.13 -3.68 6.97 30.88 0.22 -3.47 16 18 C 0.14 5.33 4.48 45.63 0.20 5.54 16 19 N -0.73 -35.31 5.40 -319.92 -1.73 -37.03 16 20 C -0.24 -12.88 9.97 84.03 0.84 -12.05 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 22 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 23 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 24 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C -0.13 -3.94 7.59 30.89 0.23 -3.70 16 29 C -0.12 -2.58 7.64 30.88 0.24 -2.34 16 30 H 0.04 0.88 8.13 -2.38 -0.02 0.86 16 31 H 0.07 1.26 8.07 -2.39 -0.02 1.25 16 32 H 0.08 1.93 4.76 -2.39 -0.01 1.92 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.79 4.60 -2.39 -0.01 1.78 16 37 H 0.07 1.21 8.07 -2.38 -0.02 1.20 16 38 H 0.04 0.88 8.13 -2.39 -0.02 0.86 16 39 H 0.22 1.30 7.49 -2.91 -0.02 1.28 16 40 H 0.41 6.14 6.96 -92.71 -0.64 5.49 16 41 H 0.10 2.01 7.47 -2.39 -0.02 1.99 16 42 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 45 H 0.06 1.68 8.09 -2.39 -0.02 1.66 16 46 H 0.06 2.46 8.10 -2.39 -0.02 2.44 16 47 H 0.37 19.53 7.92 -92.71 -0.73 18.79 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 51 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -69.92 408.48 0.92 -69.00 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -2.34 Total: 36.95 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 6.01 Total: -14.53 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -4.73 Total: -124.12 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.04 Total: -14.54 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -69.92 0.92 -69.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965817670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.590 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds