Wall clock time and date at job start Wed Apr 1 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47376 * 2 1 4 4 C 1.50706 * 109.46719 * 119.99770 * 2 1 3 5 5 N 1.32163 * 120.54006 * 311.56888 * 4 2 1 6 6 C 1.31852 * 120.96529 * 180.33668 * 5 4 2 7 7 N 1.31882 * 122.09929 * 359.65336 * 6 5 4 8 8 C 1.32136 * 120.96469 * 0.03086 * 7 6 5 9 9 C 1.39929 * 120.53415 * 131.28862 * 4 2 1 10 10 C 1.47830 * 120.94445 * 359.97275 * 9 4 2 11 11 O 1.21556 * 119.99545 * 37.24002 * 10 9 4 12 12 N 1.34768 * 120.00478 * 217.24627 * 10 9 4 13 13 C 1.46500 * 120.00126 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47086 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.44814 * 294.99692 * 14 13 12 16 16 C 1.54865 * 109.45101 * 175.05217 * 14 13 12 17 17 C 1.47108 * 110.34496 * 168.72521 * 16 14 13 18 18 C 1.52560 * 114.32440 * 62.79857 * 17 16 14 19 19 C 1.50883 * 109.35110 * 274.99340 * 18 17 16 20 20 C 1.53936 * 110.09472 * 91.88705 * 19 18 17 21 21 N 1.44574 * 109.45120 * 54.94489 * 14 13 12 22 22 C 1.36935 * 118.64101 * 30.72920 * 21 14 13 23 23 H 1.07995 * 120.00017 * 28.45327 * 22 21 14 24 24 C 1.38817 * 120.00071 * 208.45054 * 22 21 14 25 25 N 1.31629 * 119.99751 * 15.11201 * 24 22 21 26 26 Si 1.86794 * 120.00184 * 195.10760 * 24 22 21 27 27 H 1.48504 * 109.47028 * 60.00404 * 26 24 22 28 28 H 1.48502 * 109.47071 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47484 * 300.00282 * 26 24 22 30 30 H 1.09001 * 109.47228 * 299.99972 * 1 2 3 31 31 H 1.08998 * 109.46856 * 60.00151 * 1 2 3 32 32 H 1.09005 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46977 * 239.99305 * 2 1 3 34 34 H 1.08998 * 109.47004 * 299.99758 * 3 2 1 35 35 H 1.09005 * 109.47315 * 59.99572 * 3 2 1 36 36 H 1.09002 * 109.47256 * 179.97438 * 3 2 1 37 37 H 1.08006 * 118.95071 * 179.68223 * 6 5 4 38 38 H 1.08005 * 120.53878 * 179.97438 * 8 7 6 39 39 H 0.97001 * 120.00199 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47287 * 59.99751 * 13 12 10 41 41 H 1.09002 * 109.47192 * 299.99204 * 13 12 10 42 42 H 1.09004 * 109.33137 * 288.99557 * 16 14 13 43 43 H 1.09007 * 109.33203 * 48.46744 * 16 14 13 44 44 H 1.09000 * 108.49552 * 301.55597 * 17 16 14 45 45 H 1.08998 * 108.40484 * 183.97846 * 17 16 14 46 46 H 1.09005 * 109.48957 * 155.03371 * 18 17 16 47 47 H 1.08997 * 109.49404 * 34.95466 * 18 17 16 48 48 H 1.08999 * 109.36544 * 331.69528 * 19 18 17 49 49 H 1.08998 * 109.26601 * 212.01575 * 19 18 17 50 50 H 1.08998 * 108.95219 * 198.75102 * 20 19 18 51 51 H 1.09007 * 108.94724 * 80.12683 * 20 19 18 52 52 H 0.96996 * 119.99645 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.5440 -0.4153 2.4227 6 6 1.9819 -1.0269 3.5056 7 7 2.9140 -1.9586 3.4557 8 6 3.4529 -2.3202 2.3047 9 6 3.0190 -1.6973 1.1287 10 6 3.5914 -2.0674 -0.1830 11 8 3.7835 -1.2123 -1.0253 12 7 3.9001 -3.3528 -0.4451 13 6 4.4679 -3.7194 -1.7449 14 6 4.7249 -5.2273 -1.7822 15 1 5.4910 -5.4830 -1.0502 16 6 5.2072 -5.6334 -3.1967 17 6 5.7143 -7.0143 -3.1872 18 6 4.6683 -8.0654 -2.8289 19 6 4.5764 -8.1880 -1.3279 20 6 3.4902 -7.2417 -0.7854 21 7 3.5027 -5.9319 -1.4661 22 6 2.3074 -5.3605 -1.8121 23 1 2.2523 -4.6964 -2.6620 24 6 1.1664 -5.6348 -1.0705 25 7 1.2720 -6.1895 0.1186 26 14 -0.5186 -5.2168 -1.7598 27 1 -0.7306 -5.9553 -3.0306 28 1 -1.5647 -5.6070 -0.7807 29 1 -0.6001 -3.7565 -2.0165 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.5637 -0.7565 4.4640 38 1 4.2161 -3.0837 2.2719 39 1 3.7471 -4.0352 0.2271 40 1 5.4074 -3.1873 -1.8942 41 1 3.7681 -3.4502 -2.5361 42 1 4.3749 -5.5596 -3.8967 43 1 6.0029 -4.9593 -3.5140 44 1 6.5300 -7.0782 -2.4671 45 1 6.1095 -7.2426 -4.1771 46 1 4.9572 -9.0261 -3.2553 47 1 3.6997 -7.7659 -3.2293 48 1 5.5374 -7.9272 -0.8845 49 1 4.3244 -9.2155 -1.0657 50 1 3.6550 -7.0879 0.2810 51 1 2.5138 -7.7051 -0.9277 52 1 0.4748 -6.3808 0.6369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969150365.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:11 Heat of formation + Delta-G solvation = 17.531687 kcal Electronic energy + Delta-G solvation = -32686.790493 eV Core-core repulsion = 28686.422606 eV Total energy + Delta-G solvation = -4000.367887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.15523 -39.07301 -38.02988 -35.95733 -34.51343 -33.53984 -32.96823 -32.02897 -31.18128 -30.71071 -27.18943 -26.97539 -25.85730 -24.88395 -24.49914 -23.52056 -22.17804 -20.69437 -20.33165 -19.71578 -19.23887 -17.69872 -17.46900 -16.61128 -16.06396 -15.59856 -15.38972 -14.84434 -14.68790 -14.47361 -14.23383 -13.93439 -13.90044 -13.70495 -13.60611 -13.36854 -13.02586 -12.93097 -12.82337 -12.14245 -12.02395 -12.01683 -11.57579 -11.46534 -11.38873 -11.31110 -11.16584 -11.13472 -10.87163 -10.71206 -10.66384 -10.38555 -10.26632 -10.08703 -10.03659 -9.75290 -9.64451 -9.63183 -9.41498 -9.30753 -9.13496 -8.48283 -8.32524 -6.76136 -5.88950 -3.33861 0.72461 1.15619 3.10687 3.31718 3.37601 3.40531 3.64909 3.96140 4.08923 4.21338 4.41491 4.45462 4.99088 5.05793 5.14014 5.26820 5.29014 5.33269 5.37948 5.42585 5.43642 5.55142 5.59604 5.79577 5.83065 5.84786 5.95376 5.99715 6.01310 6.08377 6.08905 6.17659 6.22725 6.33660 6.37267 6.41261 6.50620 6.55194 6.55678 6.60431 6.64424 6.70326 6.79817 6.93096 7.02046 7.04364 7.11204 7.35000 7.60554 7.75662 8.09004 8.14361 8.36184 8.68928 9.13734 9.78320 10.23620 11.17468 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.004150 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.785498 B = 6744.918622 C = 7268.420745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.235 3.765 5 N -0.520 5.520 6 C 0.303 3.697 7 N -0.526 5.526 8 C 0.185 3.815 9 C -0.221 4.221 10 C 0.563 3.437 11 O -0.547 6.547 12 N -0.677 5.677 13 C 0.129 3.871 14 C 0.173 3.827 15 H 0.045 0.955 16 C -0.136 4.136 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.143 4.143 20 C 0.181 3.819 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.062 0.938 24 C 0.015 3.985 25 N -0.900 5.900 26 Si 0.888 3.112 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.196 0.804 38 H 0.171 0.829 39 H 0.412 0.588 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.049 0.951 50 H 0.024 0.976 51 H 0.072 0.928 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 5.572 1.571 7.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.187 4.187 4 C 0.088 3.912 5 N -0.233 5.233 6 C 0.016 3.984 7 N -0.239 5.239 8 C 0.019 3.981 9 C -0.229 4.229 10 C 0.347 3.653 11 O -0.427 6.427 12 N -0.325 5.325 13 C 0.004 3.996 14 C 0.064 3.936 15 H 0.063 0.937 16 C -0.177 4.177 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.182 4.182 20 C 0.056 3.944 21 N -0.305 5.305 22 C -0.382 4.382 23 H 0.080 0.920 24 C -0.185 4.185 25 N -0.544 5.544 26 Si 0.718 3.282 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.213 0.787 38 H 0.188 0.812 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.042 0.958 51 H 0.091 0.909 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.958 6.314 2.015 8.277 hybrid contribution -0.798 -0.679 -0.697 1.258 sum 4.160 5.635 1.317 7.127 Atomic orbital electron populations 1.21782 0.93635 1.02197 1.02202 1.20451 0.96471 0.96880 0.94014 1.21649 1.01313 0.93873 1.01829 1.21774 0.87381 0.88396 0.93689 1.68235 1.27931 1.28406 0.98761 1.25063 0.88756 0.87278 0.97294 1.68388 1.11390 1.15199 1.28946 1.23410 0.94555 0.93559 0.86593 1.21716 1.02650 1.01610 0.96890 1.17660 0.78529 0.83369 0.85778 1.90705 1.54816 1.49529 1.47692 1.45643 1.61432 1.07490 1.17970 1.21556 0.96936 0.95869 0.85196 1.20520 0.89949 0.89209 0.93944 0.93691 1.21374 1.00127 0.95973 1.00179 1.20287 0.98085 0.95713 0.99755 1.20947 1.00228 0.96615 0.96634 1.22064 1.00445 0.99831 0.95846 1.20992 0.96378 0.83574 0.93454 1.43706 1.00554 1.17111 1.69144 1.18958 0.85624 1.25613 1.08019 0.92012 1.24918 0.98132 1.00422 0.94987 1.70006 1.27950 1.46849 1.09583 0.86587 0.84770 0.78459 0.78358 1.21043 1.21774 1.20833 0.91650 0.92099 0.92821 0.86986 0.91924 0.92522 0.92402 0.78717 0.81230 0.75104 0.92822 0.91063 0.91804 0.93289 0.93510 0.94082 0.94205 0.90776 0.93777 0.93271 0.95777 0.90932 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.00 37.16 0.33 -1.74 16 2 C -0.06 -0.94 2.68 -91.77 -0.25 -1.19 16 3 C -0.13 -1.75 9.17 37.15 0.34 -1.41 16 4 C 0.23 3.94 5.57 -81.81 -0.46 3.48 16 5 N -0.52 -8.09 9.83 -10.48 -0.10 -8.20 16 6 C 0.30 4.28 12.27 -92.03 -1.13 3.15 16 7 N -0.53 -8.05 10.42 -14.24 -0.15 -8.20 16 8 C 0.19 2.90 10.64 -16.77 -0.18 2.72 16 9 C -0.22 -3.80 5.80 -104.69 -0.61 -4.41 16 10 C 0.56 10.38 7.00 -12.34 -0.09 10.29 16 11 O -0.55 -10.95 14.57 5.32 0.08 -10.87 16 12 N -0.68 -12.30 4.66 -61.26 -0.29 -12.59 16 13 C 0.13 2.27 4.52 -4.04 -0.02 2.26 16 14 C 0.17 3.02 2.19 -67.97 -0.15 2.87 16 15 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 16 C -0.14 -2.14 5.06 -28.58 -0.14 -2.29 16 17 C -0.10 -1.50 5.16 -29.78 -0.15 -1.65 16 18 C -0.11 -1.73 5.51 -28.02 -0.15 -1.89 16 19 C -0.14 -2.43 5.71 -27.31 -0.16 -2.58 16 20 C 0.18 3.75 4.66 -2.94 -0.01 3.73 16 21 N -0.58 -11.98 1.77 -164.47 -0.29 -12.27 16 22 C -0.25 -5.94 7.61 -15.06 -0.11 -6.05 16 23 H 0.06 1.52 6.75 -52.49 -0.35 1.16 16 24 C 0.01 0.36 4.87 -17.42 -0.08 0.28 16 25 N -0.90 -23.15 11.12 55.49 0.62 -22.54 16 26 Si 0.89 20.85 29.58 -169.99 -5.03 15.82 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 2.04 5.40 -51.93 -0.28 1.76 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.20 1.97 8.06 -52.48 -0.42 1.54 16 38 H 0.17 2.29 7.82 -52.48 -0.41 1.88 16 39 H 0.41 7.83 7.46 -40.82 -0.30 7.52 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.41 6.85 -51.93 -0.36 1.05 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 44 H 0.05 0.67 7.36 -51.93 -0.38 0.28 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 48 H 0.04 0.71 7.32 -51.93 -0.38 0.33 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.02 0.54 8.01 -51.93 -0.42 0.12 16 51 H 0.07 1.73 6.46 -51.92 -0.34 1.40 16 52 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -26.59 403.48 -10.74 -37.33 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.64 Total: 9.85 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -3.02 Total: 5.59 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.21 Total: -63.79 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -26.59 -10.74 -37.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969150365.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.859 kcal (2) G-P(sol) polarization free energy of solvation -26.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds