Wall clock time and date at job start Wed Apr 1 2020 04:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47376 * 2 1 4 4 C 1.50706 * 109.46719 * 119.99770 * 2 1 3 5 5 N 1.32163 * 120.54006 * 311.56888 * 4 2 1 6 6 C 1.31852 * 120.96529 * 180.33668 * 5 4 2 7 7 N 1.31882 * 122.09929 * 359.65336 * 6 5 4 8 8 C 1.32136 * 120.96469 * 0.03086 * 7 6 5 9 9 C 1.39929 * 120.53415 * 131.28862 * 4 2 1 10 10 C 1.47830 * 120.94445 * 359.97275 * 9 4 2 11 11 O 1.21556 * 119.99545 * 37.24002 * 10 9 4 12 12 N 1.34768 * 120.00478 * 217.24627 * 10 9 4 13 13 C 1.46500 * 120.00126 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47086 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.44814 * 294.99692 * 14 13 12 16 16 C 1.54865 * 109.45101 * 175.05217 * 14 13 12 17 17 C 1.47108 * 110.34496 * 168.72521 * 16 14 13 18 18 C 1.52560 * 114.32440 * 62.79857 * 17 16 14 19 19 C 1.50883 * 109.35110 * 274.99340 * 18 17 16 20 20 C 1.53936 * 110.09472 * 91.88705 * 19 18 17 21 21 N 1.44574 * 109.45120 * 54.94489 * 14 13 12 22 22 C 1.36935 * 118.64101 * 30.72920 * 21 14 13 23 23 H 1.07995 * 120.00017 * 28.45327 * 22 21 14 24 24 C 1.38817 * 120.00071 * 208.45054 * 22 21 14 25 25 N 1.31629 * 119.99751 * 15.11201 * 24 22 21 26 26 Si 1.86794 * 120.00184 * 195.10760 * 24 22 21 27 27 H 1.48504 * 109.47028 * 60.00404 * 26 24 22 28 28 H 1.48502 * 109.47071 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47484 * 300.00282 * 26 24 22 30 30 H 1.09001 * 109.47228 * 299.99972 * 1 2 3 31 31 H 1.08998 * 109.46856 * 60.00151 * 1 2 3 32 32 H 1.09005 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46977 * 239.99305 * 2 1 3 34 34 H 1.08998 * 109.47004 * 299.99758 * 3 2 1 35 35 H 1.09005 * 109.47315 * 59.99572 * 3 2 1 36 36 H 1.09002 * 109.47256 * 179.97438 * 3 2 1 37 37 H 1.08006 * 118.95071 * 179.68223 * 6 5 4 38 38 H 1.08005 * 120.53878 * 179.97438 * 8 7 6 39 39 H 0.97001 * 120.00199 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47287 * 59.99751 * 13 12 10 41 41 H 1.09002 * 109.47192 * 299.99204 * 13 12 10 42 42 H 1.09004 * 109.33137 * 288.99557 * 16 14 13 43 43 H 1.09007 * 109.33203 * 48.46744 * 16 14 13 44 44 H 1.09000 * 108.49552 * 301.55597 * 17 16 14 45 45 H 1.08998 * 108.40484 * 183.97846 * 17 16 14 46 46 H 1.09005 * 109.48957 * 155.03371 * 18 17 16 47 47 H 1.08997 * 109.49404 * 34.95466 * 18 17 16 48 48 H 1.08999 * 109.36544 * 331.69528 * 19 18 17 49 49 H 1.08998 * 109.26601 * 212.01575 * 19 18 17 50 50 H 1.08998 * 108.95219 * 198.75102 * 20 19 18 51 51 H 1.09007 * 108.94724 * 80.12683 * 20 19 18 52 52 H 0.96996 * 119.99645 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.5440 -0.4153 2.4227 6 6 1.9819 -1.0269 3.5056 7 7 2.9140 -1.9586 3.4557 8 6 3.4529 -2.3202 2.3047 9 6 3.0190 -1.6973 1.1287 10 6 3.5914 -2.0674 -0.1830 11 8 3.7835 -1.2123 -1.0253 12 7 3.9001 -3.3528 -0.4451 13 6 4.4679 -3.7194 -1.7449 14 6 4.7249 -5.2273 -1.7822 15 1 5.4910 -5.4830 -1.0502 16 6 5.2072 -5.6334 -3.1967 17 6 5.7143 -7.0143 -3.1872 18 6 4.6683 -8.0654 -2.8289 19 6 4.5764 -8.1880 -1.3279 20 6 3.4902 -7.2417 -0.7854 21 7 3.5027 -5.9319 -1.4661 22 6 2.3074 -5.3605 -1.8121 23 1 2.2523 -4.6964 -2.6620 24 6 1.1664 -5.6348 -1.0705 25 7 1.2720 -6.1895 0.1186 26 14 -0.5186 -5.2168 -1.7598 27 1 -0.7306 -5.9553 -3.0306 28 1 -1.5647 -5.6070 -0.7807 29 1 -0.6001 -3.7565 -2.0165 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.5637 -0.7565 4.4640 38 1 4.2161 -3.0837 2.2719 39 1 3.7471 -4.0352 0.2271 40 1 5.4074 -3.1873 -1.8942 41 1 3.7681 -3.4502 -2.5361 42 1 4.3749 -5.5596 -3.8967 43 1 6.0029 -4.9593 -3.5140 44 1 6.5300 -7.0782 -2.4671 45 1 6.1095 -7.2426 -4.1771 46 1 4.9572 -9.0261 -3.2553 47 1 3.6997 -7.7659 -3.2293 48 1 5.5374 -7.9272 -0.8845 49 1 4.3244 -9.2155 -1.0657 50 1 3.6550 -7.0879 0.2810 51 1 2.5138 -7.7051 -0.9277 52 1 0.4748 -6.3808 0.6369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969150365.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:09 Heat of formation + Delta-G solvation = 5.053057 kcal Electronic energy + Delta-G solvation = -32687.331607 eV Core-core repulsion = 28686.422606 eV Total energy + Delta-G solvation = -4000.909001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.39859 -40.51881 -39.49177 -37.18165 -35.94882 -35.21388 -34.21842 -33.39183 -32.54629 -32.36148 -28.71533 -28.11894 -27.41219 -26.12561 -25.77338 -25.18928 -23.59098 -21.92000 -21.75572 -21.09915 -20.78722 -18.95689 -18.91364 -17.91841 -17.62570 -17.19624 -16.83902 -16.30206 -16.06405 -15.91572 -15.69421 -15.33847 -15.21067 -15.08331 -15.07461 -14.67549 -14.45449 -14.25557 -14.08389 -13.69164 -13.38661 -13.16631 -13.11224 -12.90883 -12.82979 -12.75390 -12.71440 -12.55048 -12.41950 -12.34142 -12.05245 -11.92725 -11.59444 -11.53852 -11.38362 -11.31138 -11.19148 -11.03663 -10.75745 -10.67077 -10.36214 -10.35637 -9.81306 -8.54352 -7.81153 -5.23563 -0.51155 -0.08772 1.38187 1.43043 1.44920 1.69195 2.28507 2.50888 2.70128 2.90282 3.09860 3.24243 3.34562 3.60594 3.69673 3.79492 4.05866 4.06062 4.09694 4.13449 4.19170 4.29625 4.41142 4.44511 4.52256 4.62261 4.63288 4.69219 4.72922 4.83730 4.84900 4.90379 5.02830 5.03097 5.09833 5.15052 5.18696 5.25645 5.26875 5.28833 5.35633 5.40899 5.44405 5.56510 5.62132 5.68983 5.77693 5.79621 5.79913 5.91295 6.46015 6.62081 6.92448 7.21779 7.26191 8.01058 8.39118 9.21478 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.004150 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.785498 B = 6744.918622 C = 7268.420745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.119 4.119 4 C 0.225 3.775 5 N -0.524 5.524 6 C 0.306 3.694 7 N -0.534 5.534 8 C 0.188 3.812 9 C -0.246 4.246 10 C 0.563 3.437 11 O -0.567 6.567 12 N -0.678 5.678 13 C 0.132 3.868 14 C 0.172 3.828 15 H 0.060 0.940 16 C -0.128 4.128 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.132 4.132 20 C 0.190 3.810 21 N -0.587 5.587 22 C -0.229 4.229 23 H 0.050 0.950 24 C -0.024 4.024 25 N -0.915 5.915 26 Si 0.921 3.079 27 H -0.285 1.285 28 H -0.301 1.301 29 H -0.289 1.289 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.237 0.763 38 H 0.187 0.813 39 H 0.408 0.592 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.003 0.997 51 H 0.035 0.965 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 5.875 1.729 9.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 C -0.177 4.177 4 C 0.078 3.922 5 N -0.238 5.238 6 C 0.020 3.980 7 N -0.247 5.247 8 C 0.022 3.978 9 C -0.253 4.253 10 C 0.349 3.651 11 O -0.448 6.448 12 N -0.325 5.325 13 C 0.008 3.992 14 C 0.064 3.936 15 H 0.078 0.922 16 C -0.168 4.168 17 C -0.138 4.138 18 C -0.141 4.141 19 C -0.171 4.171 20 C 0.065 3.935 21 N -0.309 5.309 22 C -0.360 4.360 23 H 0.068 0.932 24 C -0.221 4.221 25 N -0.562 5.562 26 Si 0.753 3.247 27 H -0.212 1.212 28 H -0.227 1.227 29 H -0.215 1.215 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.252 0.748 38 H 0.203 0.797 39 H 0.244 0.756 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.021 0.979 51 H 0.054 0.946 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.636 6.619 2.151 9.617 hybrid contribution -1.290 -0.752 -0.751 1.671 sum 5.346 5.867 1.400 8.060 Atomic orbital electron populations 1.21739 0.92838 1.00925 1.03634 1.20442 0.97082 0.97914 0.92699 1.21583 1.00519 0.92455 1.03151 1.21983 0.87361 0.88332 0.94532 1.68311 1.28041 1.28834 0.98630 1.25923 0.87702 0.86037 0.98347 1.68491 1.11956 1.15749 1.28517 1.23687 0.94518 0.93353 0.86274 1.21700 1.03953 1.02971 0.96721 1.17850 0.78044 0.83110 0.86137 1.90681 1.55644 1.49978 1.48540 1.45670 1.61545 1.07358 1.17958 1.21555 0.97097 0.96256 0.84278 1.20713 0.88756 0.88615 0.95508 0.92217 1.21285 1.00138 0.97486 0.97898 1.20273 0.97827 0.94255 1.01420 1.20908 0.99180 0.98302 0.95745 1.21935 0.99546 0.99137 0.96481 1.20759 0.96003 0.84108 0.92595 1.43756 1.00784 1.17475 1.68911 1.18916 0.86696 1.23816 1.06564 0.93230 1.25219 0.99509 1.01806 0.95521 1.70098 1.27246 1.48638 1.10188 0.86060 0.83408 0.77666 0.77604 1.21169 1.22715 1.21534 0.90542 0.90321 0.95335 0.89720 0.90273 0.91462 0.93499 0.74750 0.79656 0.75577 0.90777 0.93557 0.93968 0.90692 0.91921 0.92072 0.92026 0.94000 0.92018 0.92321 0.97863 0.94646 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.00 71.98 0.65 -3.26 16 2 C -0.06 -1.98 2.68 -11.54 -0.03 -2.02 16 3 C -0.12 -3.13 9.17 71.98 0.66 -2.47 16 4 C 0.22 7.53 5.57 42.92 0.24 7.77 16 5 N -0.52 -15.75 9.83 -187.05 -1.84 -17.59 16 6 C 0.31 8.09 12.27 180.84 2.22 10.31 16 7 N -0.53 -15.67 10.42 -198.96 -2.07 -17.74 16 8 C 0.19 5.80 10.64 85.07 0.91 6.71 16 9 C -0.25 -8.52 5.80 -19.91 -0.12 -8.63 16 10 C 0.56 21.12 7.00 86.78 0.61 21.72 16 11 O -0.57 -23.11 14.57 -3.89 -0.06 -23.17 16 12 N -0.68 -24.80 4.66 -465.99 -2.17 -26.97 16 13 C 0.13 4.61 4.52 86.38 0.39 5.00 16 14 C 0.17 5.78 2.19 45.99 0.10 5.88 16 15 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 16 C -0.13 -3.73 5.06 29.40 0.15 -3.59 16 17 C -0.10 -2.64 5.16 28.62 0.15 -2.49 16 18 C -0.10 -3.13 5.51 29.76 0.16 -2.97 16 19 C -0.13 -4.25 5.71 30.22 0.17 -4.07 16 20 C 0.19 7.92 4.66 86.48 0.40 8.32 16 21 N -0.59 -24.17 1.77 -674.25 -1.19 -25.36 16 22 C -0.23 -11.00 7.61 84.04 0.64 -10.36 16 23 H 0.05 2.51 6.75 -2.91 -0.02 2.49 16 24 C -0.02 -1.23 4.87 84.86 0.41 -0.82 16 25 N -0.92 -48.57 11.12 21.65 0.24 -48.33 16 26 Si 0.92 44.03 29.58 68.60 2.03 46.06 16 27 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 28 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 29 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 30 H 0.08 2.03 7.89 -2.39 -0.02 2.02 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.03 0.94 8.14 -2.38 -0.02 0.93 16 33 H 0.08 3.18 5.40 -2.39 -0.01 3.17 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.24 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.19 4.90 7.82 -2.91 -0.02 4.88 16 39 H 0.41 15.65 7.46 -92.71 -0.69 14.96 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.85 6.85 -2.39 -0.02 1.83 16 42 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.07 1.84 8.11 -2.38 -0.02 1.82 16 44 H 0.06 1.50 7.36 -2.39 -0.02 1.48 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.04 1.54 7.48 -2.39 -0.02 1.52 16 48 H 0.06 1.79 7.32 -2.39 -0.02 1.77 16 49 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.00 0.15 8.01 -2.39 -0.02 0.13 16 51 H 0.03 1.73 6.46 -2.38 -0.02 1.71 16 52 H 0.24 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -59.06 403.48 2.87 -56.19 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.22 Total: 31.86 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 7.71 Total: 25.05 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -7.04 Total: -136.00 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -59.06 2.87 -56.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969150365.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.241 kcal (2) G-P(sol) polarization free energy of solvation -59.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds