Wall clock time and date at job start Wed Apr 1 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47075 * 2 1 4 4 C 1.50699 * 109.47515 * 120.00256 * 2 1 3 5 5 N 1.32151 * 120.53483 * 290.39754 * 4 2 1 6 6 C 1.31859 * 120.96877 * 179.97438 * 5 4 2 7 7 N 1.31894 * 122.09246 * 0.02562 * 6 5 4 8 8 C 1.32131 * 120.96567 * 359.97438 * 7 6 5 9 9 C 1.39933 * 120.53483 * 110.37030 * 4 2 1 10 10 C 1.47824 * 120.94102 * 0.02562 * 9 4 2 11 11 O 1.21553 * 120.00410 * 325.98950 * 10 9 4 12 12 N 1.34780 * 120.00189 * 145.99033 * 10 9 4 13 13 C 1.46494 * 120.00254 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47176 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.44521 * 64.94871 * 14 13 12 16 16 C 1.54867 * 109.45188 * 184.86448 * 14 13 12 17 17 C 1.47088 * 110.32289 * 191.29383 * 16 14 13 18 18 C 1.52569 * 114.33169 * 297.19789 * 17 16 14 19 19 C 1.50874 * 109.35070 * 85.02513 * 18 17 16 20 20 C 1.53946 * 110.09380 * 268.11258 * 19 18 17 21 21 N 1.44579 * 109.45175 * 305.00190 * 14 13 12 22 22 C 1.36931 * 118.63963 * 329.26655 * 21 14 13 23 23 H 1.08004 * 120.00263 * 329.30582 * 22 21 14 24 24 C 1.38815 * 120.00049 * 149.30501 * 22 21 14 25 25 N 1.31615 * 120.00206 * 344.95935 * 24 22 21 26 26 Si 1.86801 * 120.00169 * 164.96010 * 24 22 21 27 27 H 1.48504 * 109.47120 * 89.99776 * 26 24 22 28 28 H 1.48500 * 109.47369 * 209.99997 * 26 24 22 29 29 H 1.48503 * 109.46825 * 330.00227 * 26 24 22 30 30 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46818 * 299.99830 * 1 2 3 32 32 H 1.08999 * 109.46985 * 59.99679 * 1 2 3 33 33 H 1.09008 * 109.46544 * 240.00503 * 2 1 3 34 34 H 1.08996 * 109.46586 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47018 * 300.00277 * 3 2 1 36 36 H 1.08996 * 109.46667 * 60.00184 * 3 2 1 37 37 H 1.07998 * 118.95459 * 180.02562 * 6 5 4 38 38 H 1.07994 * 120.53548 * 180.02562 * 8 7 6 39 39 H 0.97009 * 119.99409 * 0.02562 * 12 10 9 40 40 H 1.08993 * 109.47187 * 299.99910 * 13 12 10 41 41 H 1.08995 * 109.47151 * 60.00321 * 13 12 10 42 42 H 1.08998 * 109.33288 * 311.56104 * 16 14 13 43 43 H 1.09008 * 109.32411 * 71.03327 * 16 14 13 44 44 H 1.09000 * 108.51131 * 175.94074 * 17 16 14 45 45 H 1.08998 * 108.39123 * 58.35689 * 17 16 14 46 46 H 1.09002 * 109.49008 * 325.06045 * 18 17 16 47 47 H 1.09004 * 109.51050 * 205.00455 * 18 17 16 48 48 H 1.09001 * 109.36396 * 147.92416 * 19 18 17 49 49 H 1.08994 * 109.26699 * 28.23844 * 19 18 17 50 50 H 1.09006 * 108.94776 * 279.87514 * 20 19 18 51 51 H 1.09003 * 108.87533 * 161.20246 * 20 19 18 52 52 H 0.96994 * 120.00760 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 7 1.8823 -0.1692 2.4266 6 6 2.3182 -0.7835 3.5089 7 7 2.9200 -1.9559 3.4548 8 6 3.1119 -2.5689 2.3001 9 6 2.6650 -1.9542 1.1247 10 6 2.8564 -2.6002 -0.1910 11 8 2.0225 -2.4597 -1.0642 12 7 3.9556 -3.3450 -0.4226 13 6 4.1450 -3.9857 -1.7263 14 6 5.4620 -4.7645 -1.7254 15 1 5.3994 -5.5823 -1.0074 16 6 5.7221 -5.3395 -3.1396 17 6 6.8292 -6.3072 -3.1019 18 6 8.1704 -5.7120 -2.6838 19 6 8.2607 -5.6921 -1.1779 20 6 7.7450 -4.3471 -0.6348 21 7 6.5440 -3.8801 -1.3547 22 6 6.4505 -2.5545 -1.6846 23 1 5.9130 -2.2555 -2.5724 24 6 7.0466 -1.5948 -0.8780 25 7 7.4398 -1.9091 0.3380 26 14 7.2906 0.1430 -1.5185 27 1 6.0981 0.9642 -1.1884 28 1 8.4935 0.7399 -0.8845 29 1 7.4740 0.1063 -2.9917 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.1779 -0.3117 4.4701 38 1 3.6051 -3.5290 2.2639 39 1 4.6209 -3.4574 0.2744 40 1 3.3183 -4.6694 -1.9187 41 1 4.1747 -3.2234 -2.5048 42 1 4.8208 -5.8362 -3.4986 43 1 5.9772 -4.5257 -3.8186 44 1 6.9394 -6.7458 -4.0937 45 1 6.5690 -7.1002 -2.4010 46 1 8.2520 -4.6947 -3.0665 47 1 8.9801 -6.3190 -3.0888 48 1 9.2991 -5.8295 -0.8762 49 1 7.6558 -6.5022 -0.7706 50 1 8.5316 -3.5994 -0.7364 51 1 7.5018 -4.4632 0.4214 52 1 7.8566 -1.2387 0.9016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969150366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:19 Heat of formation + Delta-G solvation = 17.221227 kcal Electronic energy + Delta-G solvation = -32688.380254 eV Core-core repulsion = 28687.998905 eV Total energy + Delta-G solvation = -4000.381349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.14621 -39.06604 -38.03091 -35.94941 -34.50693 -33.52650 -32.95580 -32.02611 -31.17589 -30.72690 -27.18716 -26.96948 -25.84989 -24.87565 -24.48225 -23.52587 -22.17560 -20.69879 -20.31788 -19.71843 -19.24314 -17.68130 -17.45538 -16.60422 -16.05348 -15.58896 -15.36867 -14.84531 -14.69446 -14.47412 -14.23621 -13.93092 -13.89360 -13.71673 -13.61172 -13.34825 -13.01571 -12.92788 -12.82035 -12.15209 -12.02190 -12.01740 -11.57625 -11.45325 -11.38088 -11.31431 -11.18004 -11.13432 -10.88334 -10.71964 -10.65079 -10.37421 -10.26984 -10.09943 -10.03991 -9.76056 -9.63309 -9.62347 -9.39585 -9.28267 -9.12085 -8.50145 -8.30867 -6.73258 -5.89826 -3.36635 0.72532 1.17160 3.12800 3.29905 3.38413 3.40726 3.66271 3.98275 4.10343 4.22450 4.41039 4.47152 4.99547 5.07277 5.14021 5.28122 5.28934 5.34258 5.37821 5.42903 5.43914 5.56091 5.59332 5.80366 5.83125 5.86069 5.95222 6.00299 6.01777 6.08684 6.09008 6.18310 6.23218 6.33391 6.38562 6.41713 6.50505 6.55836 6.56958 6.60236 6.64543 6.70333 6.79107 6.93223 7.02669 7.05492 7.12078 7.32882 7.57665 7.75597 8.10013 8.15739 8.36915 8.70106 9.13326 9.77409 10.24082 11.16395 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.004129 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.248869 B = 6780.155821 C = 7279.544809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.141 4.141 4 C 0.235 3.765 5 N -0.521 5.521 6 C 0.304 3.696 7 N -0.526 5.526 8 C 0.187 3.813 9 C -0.222 4.222 10 C 0.563 3.437 11 O -0.547 6.547 12 N -0.677 5.677 13 C 0.129 3.871 14 C 0.173 3.827 15 H 0.045 0.955 16 C -0.136 4.136 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.143 4.143 20 C 0.181 3.819 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.061 0.939 24 C 0.017 3.983 25 N -0.898 5.898 26 Si 0.887 3.113 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.196 0.804 38 H 0.171 0.829 39 H 0.412 0.588 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.049 0.951 49 H 0.044 0.956 50 H 0.068 0.932 51 H 0.025 0.975 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -3.117 1.173 7.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.198 4.198 4 C 0.088 3.912 5 N -0.234 5.234 6 C 0.016 3.984 7 N -0.239 5.239 8 C 0.020 3.980 9 C -0.230 4.230 10 C 0.347 3.653 11 O -0.428 6.428 12 N -0.325 5.325 13 C 0.005 3.995 14 C 0.064 3.936 15 H 0.063 0.937 16 C -0.177 4.177 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.182 4.182 20 C 0.057 3.943 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.079 0.921 24 C -0.183 4.183 25 N -0.542 5.542 26 Si 0.717 3.283 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.213 0.787 38 H 0.188 0.812 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.043 0.957 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.630 -2.518 1.602 8.193 hybrid contribution 0.955 0.543 -0.614 1.259 sum -6.675 -1.975 0.988 7.031 Atomic orbital electron populations 1.21642 0.93124 1.02026 1.01823 1.20536 0.96995 0.96338 0.94310 1.21783 1.01181 0.94686 1.02171 1.21778 0.86851 0.88874 0.93671 1.68233 1.20723 1.35734 0.98730 1.25067 0.88277 0.87660 0.97370 1.68391 1.15706 1.10973 1.28871 1.23414 0.89480 0.98467 0.86590 1.21710 1.05258 0.99162 0.96835 1.17656 0.82531 0.79089 0.86041 1.90680 1.44359 1.61880 1.45878 1.45640 1.21315 1.48708 1.16827 1.21543 0.96629 0.96260 0.85081 1.20527 0.87128 0.92218 0.93750 0.93729 1.21366 0.97181 0.99018 1.00088 1.20286 0.95738 0.98137 0.99686 1.20947 0.95436 1.01572 0.96474 1.22063 0.99713 1.00564 0.95844 1.20966 0.88943 0.91302 0.93123 1.43684 1.14987 1.04595 1.67185 1.18949 1.32985 0.81918 1.04457 0.92140 1.24956 1.01310 0.97231 0.94760 1.69993 1.44230 1.33529 1.06410 0.86540 0.77505 0.85586 0.78660 1.21438 1.21673 1.20464 0.92529 0.92503 0.91962 0.86504 0.92836 0.92089 0.91738 0.78733 0.81232 0.75068 0.92839 0.91050 0.93280 0.91812 0.94066 0.93517 0.90781 0.94196 0.93250 0.93739 0.91328 0.95694 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.18 37.16 0.34 -1.40 16 2 C -0.06 -1.00 2.72 -91.77 -0.25 -1.25 16 3 C -0.14 -2.08 9.02 37.16 0.34 -1.74 16 4 C 0.24 3.97 5.55 -81.82 -0.45 3.52 16 5 N -0.52 -8.16 9.89 -10.48 -0.10 -8.27 16 6 C 0.30 4.32 12.27 -92.01 -1.13 3.19 16 7 N -0.53 -8.16 10.42 -14.24 -0.15 -8.31 16 8 C 0.19 2.97 10.63 -16.77 -0.18 2.79 16 9 C -0.22 -3.85 5.83 -104.69 -0.61 -4.46 16 10 C 0.56 10.44 7.13 -12.34 -0.09 10.35 16 11 O -0.55 -10.97 14.33 5.32 0.08 -10.89 16 12 N -0.68 -12.35 4.65 -61.26 -0.28 -12.64 16 13 C 0.13 2.29 4.53 -4.04 -0.02 2.27 16 14 C 0.17 3.02 2.19 -67.97 -0.15 2.87 16 15 H 0.04 0.76 8.06 -51.93 -0.42 0.35 16 16 C -0.14 -2.14 5.06 -28.58 -0.14 -2.28 16 17 C -0.10 -1.50 5.16 -29.79 -0.15 -1.65 16 18 C -0.11 -1.72 5.51 -28.02 -0.15 -1.88 16 19 C -0.14 -2.41 5.71 -27.31 -0.16 -2.57 16 20 C 0.18 3.74 4.66 -2.94 -0.01 3.73 16 21 N -0.58 -11.95 1.76 -164.46 -0.29 -12.24 16 22 C -0.25 -5.95 7.53 -15.06 -0.11 -6.06 16 23 H 0.06 1.49 6.85 -52.48 -0.36 1.13 16 24 C 0.02 0.42 4.86 -17.43 -0.08 0.33 16 25 N -0.90 -23.00 11.28 55.49 0.63 -22.37 16 26 Si 0.89 20.82 29.58 -169.99 -5.03 15.79 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 2.12 5.21 -51.92 -0.27 1.85 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 37 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.17 2.35 7.64 -52.49 -0.40 1.95 16 39 H 0.41 7.87 7.27 -40.82 -0.30 7.57 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.41 6.89 -51.93 -0.36 1.05 16 42 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 43 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 46 H 0.07 1.39 7.48 -51.93 -0.39 1.00 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 50 H 0.07 1.63 6.63 -51.93 -0.34 1.28 16 51 H 0.02 0.56 8.00 -51.93 -0.42 0.14 16 52 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 403.24 15.07 6.08 6.08 Total: -1.00 -26.48 403.24 -10.73 -37.21 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.63 Total: 9.87 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -3.02 Total: 5.77 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.20 Total: -63.82 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -26.48 -10.73 -37.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969150366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.432 kcal (2) G-P(sol) polarization free energy of solvation -26.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds