Wall clock time and date at job start Wed Apr 1 2020 04:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47075 * 2 1 4 4 C 1.50699 * 109.47515 * 120.00256 * 2 1 3 5 5 N 1.32151 * 120.53483 * 290.39754 * 4 2 1 6 6 C 1.31859 * 120.96877 * 179.97438 * 5 4 2 7 7 N 1.31894 * 122.09246 * 0.02562 * 6 5 4 8 8 C 1.32131 * 120.96567 * 359.97438 * 7 6 5 9 9 C 1.39933 * 120.53483 * 110.37030 * 4 2 1 10 10 C 1.47824 * 120.94102 * 0.02562 * 9 4 2 11 11 O 1.21553 * 120.00410 * 325.98950 * 10 9 4 12 12 N 1.34780 * 120.00189 * 145.99033 * 10 9 4 13 13 C 1.46494 * 120.00254 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47176 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.44521 * 64.94871 * 14 13 12 16 16 C 1.54867 * 109.45188 * 184.86448 * 14 13 12 17 17 C 1.47088 * 110.32289 * 191.29383 * 16 14 13 18 18 C 1.52569 * 114.33169 * 297.19789 * 17 16 14 19 19 C 1.50874 * 109.35070 * 85.02513 * 18 17 16 20 20 C 1.53946 * 110.09380 * 268.11258 * 19 18 17 21 21 N 1.44579 * 109.45175 * 305.00190 * 14 13 12 22 22 C 1.36931 * 118.63963 * 329.26655 * 21 14 13 23 23 H 1.08004 * 120.00263 * 329.30582 * 22 21 14 24 24 C 1.38815 * 120.00049 * 149.30501 * 22 21 14 25 25 N 1.31615 * 120.00206 * 344.95935 * 24 22 21 26 26 Si 1.86801 * 120.00169 * 164.96010 * 24 22 21 27 27 H 1.48504 * 109.47120 * 89.99776 * 26 24 22 28 28 H 1.48500 * 109.47369 * 209.99997 * 26 24 22 29 29 H 1.48503 * 109.46825 * 330.00227 * 26 24 22 30 30 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46818 * 299.99830 * 1 2 3 32 32 H 1.08999 * 109.46985 * 59.99679 * 1 2 3 33 33 H 1.09008 * 109.46544 * 240.00503 * 2 1 3 34 34 H 1.08996 * 109.46586 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47018 * 300.00277 * 3 2 1 36 36 H 1.08996 * 109.46667 * 60.00184 * 3 2 1 37 37 H 1.07998 * 118.95459 * 180.02562 * 6 5 4 38 38 H 1.07994 * 120.53548 * 180.02562 * 8 7 6 39 39 H 0.97009 * 119.99409 * 0.02562 * 12 10 9 40 40 H 1.08993 * 109.47187 * 299.99910 * 13 12 10 41 41 H 1.08995 * 109.47151 * 60.00321 * 13 12 10 42 42 H 1.08998 * 109.33288 * 311.56104 * 16 14 13 43 43 H 1.09008 * 109.32411 * 71.03327 * 16 14 13 44 44 H 1.09000 * 108.51131 * 175.94074 * 17 16 14 45 45 H 1.08998 * 108.39123 * 58.35689 * 17 16 14 46 46 H 1.09002 * 109.49008 * 325.06045 * 18 17 16 47 47 H 1.09004 * 109.51050 * 205.00455 * 18 17 16 48 48 H 1.09001 * 109.36396 * 147.92416 * 19 18 17 49 49 H 1.08994 * 109.26699 * 28.23844 * 19 18 17 50 50 H 1.09006 * 108.94776 * 279.87514 * 20 19 18 51 51 H 1.09003 * 108.87533 * 161.20246 * 20 19 18 52 52 H 0.96994 * 120.00760 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 7 1.8823 -0.1692 2.4266 6 6 2.3182 -0.7835 3.5089 7 7 2.9200 -1.9559 3.4548 8 6 3.1119 -2.5689 2.3001 9 6 2.6650 -1.9542 1.1247 10 6 2.8564 -2.6002 -0.1910 11 8 2.0225 -2.4597 -1.0642 12 7 3.9556 -3.3450 -0.4226 13 6 4.1450 -3.9857 -1.7263 14 6 5.4620 -4.7645 -1.7254 15 1 5.3994 -5.5823 -1.0074 16 6 5.7221 -5.3395 -3.1396 17 6 6.8292 -6.3072 -3.1019 18 6 8.1704 -5.7120 -2.6838 19 6 8.2607 -5.6921 -1.1779 20 6 7.7450 -4.3471 -0.6348 21 7 6.5440 -3.8801 -1.3547 22 6 6.4505 -2.5545 -1.6846 23 1 5.9130 -2.2555 -2.5724 24 6 7.0466 -1.5948 -0.8780 25 7 7.4398 -1.9091 0.3380 26 14 7.2906 0.1430 -1.5185 27 1 6.0981 0.9642 -1.1884 28 1 8.4935 0.7399 -0.8845 29 1 7.4740 0.1063 -2.9917 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.1779 -0.3117 4.4701 38 1 3.6051 -3.5290 2.2639 39 1 4.6209 -3.4574 0.2744 40 1 3.3183 -4.6694 -1.9187 41 1 4.1747 -3.2234 -2.5048 42 1 4.8208 -5.8362 -3.4986 43 1 5.9772 -4.5257 -3.8186 44 1 6.9394 -6.7458 -4.0937 45 1 6.5690 -7.1002 -2.4010 46 1 8.2520 -4.6947 -3.0665 47 1 8.9801 -6.3190 -3.0888 48 1 9.2991 -5.8295 -0.8762 49 1 7.6558 -6.5022 -0.7706 50 1 8.5316 -3.5994 -0.7364 51 1 7.5018 -4.4632 0.4214 52 1 7.8566 -1.2387 0.9016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969150366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:15 Heat of formation + Delta-G solvation = 4.860595 kcal Electronic energy + Delta-G solvation = -32688.916252 eV Core-core repulsion = 28687.998905 eV Total energy + Delta-G solvation = -4000.917347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -42.40133 -40.51503 -39.49172 -37.18144 -35.94216 -35.19792 -34.21683 -33.39080 -32.55888 -32.36353 -28.71241 -28.11415 -27.40294 -26.12951 -25.76327 -25.19228 -23.58832 -21.94350 -21.73402 -21.10131 -20.78592 -18.94712 -18.90970 -17.91647 -17.62417 -17.18454 -16.81787 -16.32085 -16.07060 -15.91560 -15.69999 -15.33509 -15.21037 -15.09467 -15.07365 -14.67975 -14.43540 -14.25357 -14.08410 -13.69981 -13.38270 -13.15626 -13.11191 -12.93424 -12.85643 -12.75406 -12.71160 -12.54397 -12.39480 -12.33916 -12.06593 -11.93599 -11.59320 -11.54880 -11.37758 -11.29962 -11.18623 -11.01801 -10.71849 -10.67953 -10.38247 -10.35685 -9.79948 -8.51423 -7.81393 -5.26038 -0.52385 -0.08636 1.35857 1.43153 1.46106 1.70892 2.28972 2.50452 2.70847 2.90929 3.09349 3.24660 3.34468 3.60812 3.69682 3.79787 4.05971 4.07337 4.09975 4.14179 4.18978 4.29755 4.41086 4.44644 4.52622 4.63514 4.63902 4.69345 4.73159 4.84065 4.85474 4.90640 5.03038 5.03621 5.10220 5.14955 5.19142 5.25983 5.27019 5.28568 5.36675 5.41114 5.44606 5.56911 5.62845 5.68514 5.77754 5.79947 5.80164 5.89042 6.46932 6.62573 6.92390 7.22256 7.26439 8.00489 8.39837 9.20814 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.004129 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.248869 B = 6780.155821 C = 7279.544809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.133 4.133 4 C 0.226 3.774 5 N -0.525 5.525 6 C 0.306 3.694 7 N -0.534 5.534 8 C 0.189 3.811 9 C -0.247 4.247 10 C 0.563 3.437 11 O -0.566 6.566 12 N -0.678 5.678 13 C 0.133 3.867 14 C 0.172 3.828 15 H 0.059 0.941 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.132 4.132 20 C 0.191 3.809 21 N -0.586 5.586 22 C -0.230 4.230 23 H 0.048 0.952 24 C -0.021 4.021 25 N -0.913 5.913 26 Si 0.920 3.080 27 H -0.298 1.298 28 H -0.298 1.298 29 H -0.279 1.279 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.185 0.815 39 H 0.408 0.592 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.031 0.969 51 H 0.004 0.996 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -4.555 1.240 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.085 4.085 3 C -0.191 4.191 4 C 0.079 3.921 5 N -0.239 5.239 6 C 0.020 3.980 7 N -0.248 5.248 8 C 0.023 3.977 9 C -0.254 4.254 10 C 0.348 3.652 11 O -0.448 6.448 12 N -0.325 5.325 13 C 0.008 3.992 14 C 0.064 3.936 15 H 0.077 0.923 16 C -0.168 4.168 17 C -0.138 4.138 18 C -0.141 4.141 19 C -0.171 4.171 20 C 0.066 3.934 21 N -0.309 5.309 22 C -0.361 4.361 23 H 0.066 0.934 24 C -0.217 4.217 25 N -0.559 5.559 26 Si 0.751 3.249 27 H -0.226 1.226 28 H -0.224 1.224 29 H -0.204 1.204 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.253 0.747 38 H 0.202 0.798 39 H 0.245 0.755 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.050 0.950 51 H 0.022 0.978 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.492 -3.975 1.646 9.519 hybrid contribution 1.195 0.980 -0.641 1.673 sum -7.297 -2.994 1.004 7.951 Atomic orbital electron populations 1.21577 0.91176 1.01765 1.03141 1.20529 0.98578 0.96411 0.92989 1.21736 0.99353 0.94384 1.03630 1.22005 0.86670 0.88904 0.94549 1.68312 1.21226 1.35739 0.98590 1.25931 0.86497 0.87095 0.98460 1.68492 1.16229 1.11621 1.28427 1.23666 0.88805 0.98923 0.86342 1.21698 1.07098 0.99984 0.96650 1.17847 0.82194 0.78744 0.86404 1.90658 1.44969 1.62486 1.46691 1.45668 1.21129 1.48880 1.16820 1.21547 0.97577 0.95846 0.84186 1.20716 0.85766 0.91844 0.95264 0.92282 1.21276 0.98915 0.98732 0.97870 1.20273 0.94256 0.97963 1.01297 1.20909 0.97339 1.00274 0.95618 1.21935 1.00394 0.98304 0.96464 1.20741 0.87895 0.92428 0.92340 1.43733 1.16146 1.04010 1.66984 1.18890 1.30804 0.83320 1.03089 0.93446 1.25246 1.02726 0.98566 0.95210 1.70076 1.45723 1.33221 1.06856 0.86022 0.76484 0.84196 0.78182 1.22615 1.22418 1.20399 0.93536 0.91511 0.90251 0.89116 0.95494 0.90193 0.90695 0.74743 0.79833 0.75545 0.90808 0.93533 0.90711 0.93981 0.92054 0.91952 0.93961 0.92000 0.92246 0.92017 0.95006 0.97763 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.18 71.98 0.66 -2.44 16 2 C -0.07 -2.10 2.72 -11.54 -0.03 -2.14 16 3 C -0.13 -3.91 9.02 71.98 0.65 -3.26 16 4 C 0.23 7.61 5.55 42.92 0.24 7.85 16 5 N -0.52 -15.90 9.89 -187.06 -1.85 -17.75 16 6 C 0.31 8.20 12.27 180.83 2.22 10.42 16 7 N -0.53 -15.95 10.42 -198.97 -2.07 -18.02 16 8 C 0.19 5.95 10.63 85.07 0.90 6.85 16 9 C -0.25 -8.64 5.83 -19.91 -0.12 -8.75 16 10 C 0.56 21.24 7.13 86.78 0.62 21.86 16 11 O -0.57 -23.11 14.33 -3.88 -0.06 -23.17 16 12 N -0.68 -24.94 4.65 -466.01 -2.17 -27.11 16 13 C 0.13 4.64 4.53 86.38 0.39 5.03 16 14 C 0.17 5.79 2.19 45.99 0.10 5.89 16 15 H 0.06 1.87 8.06 -2.38 -0.02 1.85 16 16 C -0.13 -3.73 5.06 29.39 0.15 -3.58 16 17 C -0.10 -2.64 5.16 28.61 0.15 -2.49 16 18 C -0.10 -3.11 5.51 29.76 0.16 -2.95 16 19 C -0.13 -4.22 5.71 30.22 0.17 -4.04 16 20 C 0.19 7.90 4.66 86.49 0.40 8.31 16 21 N -0.59 -24.10 1.76 -674.22 -1.19 -25.29 16 22 C -0.23 -11.04 7.53 84.04 0.63 -10.40 16 23 H 0.05 2.41 6.85 -2.91 -0.02 2.39 16 24 C -0.02 -1.05 4.86 84.86 0.41 -0.64 16 25 N -0.91 -48.17 11.28 21.65 0.24 -47.93 16 26 Si 0.92 43.96 29.58 68.60 2.03 45.99 16 27 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 3.40 5.21 -2.38 -0.01 3.38 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.01 7.92 -2.39 -0.02 1.99 16 37 H 0.24 4.09 8.06 -2.91 -0.02 4.06 16 38 H 0.18 5.04 7.64 -2.91 -0.02 5.01 16 39 H 0.41 15.75 7.27 -92.70 -0.67 15.07 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.86 6.89 -2.39 -0.02 1.85 16 42 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 43 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.49 7.35 -2.39 -0.02 1.47 16 46 H 0.04 1.54 7.48 -2.39 -0.02 1.53 16 47 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.06 1.78 7.31 -2.39 -0.02 1.76 16 50 H 0.03 1.54 6.63 -2.38 -0.02 1.52 16 51 H 0.00 0.19 8.00 -2.39 -0.02 0.17 16 52 H 0.24 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -58.79 403.24 2.90 -55.89 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.24 Total: 31.88 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 7.72 Total: 25.50 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -7.03 Total: -136.09 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -58.79 2.90 -55.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969150366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.748 kcal (2) G-P(sol) polarization free energy of solvation -58.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds