Wall clock time and date at job start Wed Apr 1 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47063 * 2 1 4 4 C 1.50701 * 109.47048 * 119.99507 * 2 1 3 5 5 C 1.35369 * 126.38387 * 144.99925 * 4 2 1 6 6 C 1.41499 * 105.50096 * 180.02562 * 5 4 2 7 7 C 1.47714 * 126.51366 * 180.02562 * 6 5 4 8 8 O 1.21565 * 120.00286 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99438 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99581 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.70717 * 35.59959 * 10 9 7 12 12 C 1.53297 * 109.71439 * 275.00271 * 10 9 7 13 13 C 1.52625 * 108.66757 * 176.38750 * 12 10 9 14 14 C 1.53388 * 110.70503 * 62.10117 * 13 12 10 15 15 H 1.09000 * 112.90233 * 73.98896 * 14 13 12 16 16 C 1.55842 * 106.35082 * 198.19703 * 14 13 12 17 17 N 1.47622 * 104.46885 * 77.18918 * 16 14 13 18 18 C 1.36942 * 125.72405 * 204.88179 * 17 16 14 19 19 H 1.07998 * 119.99315 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00033 * 359.97438 * 18 17 16 21 21 N 1.31622 * 119.99897 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00061 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47178 * 89.99722 * 22 20 18 24 24 H 1.48496 * 109.47200 * 210.00268 * 22 20 18 25 25 H 1.48507 * 109.47140 * 330.00526 * 22 20 18 26 26 C 1.47424 * 108.54818 * 24.86130 * 17 16 14 27 27 C 1.53379 * 106.51813 * 359.33533 * 26 17 16 28 28 H 1.08995 * 108.95143 * 91.05348 * 27 26 17 29 29 C 1.50891 * 113.08571 * 212.46779 * 27 26 17 30 30 N 1.31807 * 106.96574 * 0.25888 * 6 5 4 31 31 N 1.28469 * 110.07081 * 359.56448 * 30 6 5 32 32 H 0.97002 * 124.87841 * 180.15798 * 31 30 6 33 33 H 1.09002 * 109.47068 * 299.99971 * 1 2 3 34 34 H 1.08995 * 109.46942 * 60.00005 * 1 2 3 35 35 H 1.08999 * 109.46930 * 180.02562 * 1 2 3 36 36 H 1.08995 * 109.47431 * 239.99911 * 2 1 3 37 37 H 1.08998 * 109.46749 * 179.97438 * 3 2 1 38 38 H 1.09003 * 109.46888 * 299.99722 * 3 2 1 39 39 H 1.08995 * 109.47070 * 59.99690 * 3 2 1 40 40 H 1.07996 * 127.24517 * 0.02746 * 5 4 2 41 41 H 0.96994 * 120.00601 * 359.97438 * 9 7 6 42 42 H 1.09002 * 109.63097 * 296.19338 * 12 10 9 43 43 H 1.08995 * 109.63293 * 56.58569 * 12 10 9 44 44 H 1.09003 * 109.18716 * 182.68601 * 13 12 10 45 45 H 1.08998 * 109.18914 * 301.94800 * 13 12 10 46 46 H 1.08997 * 110.43850 * 318.43949 * 16 14 13 47 47 H 1.08999 * 110.43245 * 195.93634 * 16 14 13 48 48 H 0.96997 * 119.99713 * 180.02562 * 21 20 18 49 49 H 1.08999 * 110.04929 * 240.06668 * 26 17 16 50 50 H 1.09000 * 110.04734 * 118.59816 * 26 17 16 51 51 H 1.09001 * 109.05646 * 305.32412 * 29 27 26 52 52 H 1.08991 * 109.00201 * 186.36173 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 3.1416 -1.4814 1.3160 6 6 3.1924 -1.9233 2.6593 7 6 4.2221 -2.7963 3.2590 8 8 5.1423 -3.2068 2.5789 9 7 4.1418 -3.1370 4.5606 10 6 5.1626 -4.0033 5.1553 11 1 6.1349 -3.7812 4.7154 12 6 4.8046 -5.4725 4.9036 13 6 5.9265 -6.3496 5.4525 14 6 6.0697 -6.1617 6.9681 15 1 5.2700 -6.6414 7.5324 16 6 7.4823 -6.7007 7.3455 17 7 8.4097 -5.6327 6.9227 18 6 9.7295 -5.8018 6.5988 19 1 10.3251 -4.9519 6.2998 20 6 10.3015 -7.0652 6.6546 21 7 9.5753 -8.1009 7.0185 22 14 12.1016 -7.2959 6.2120 23 1 12.9353 -7.1364 7.4306 24 1 12.3026 -8.6552 5.6490 25 1 12.4979 -6.2792 5.2047 26 6 7.6764 -4.3539 6.9073 27 6 6.2355 -4.6723 7.3255 28 1 6.1504 -4.5711 8.4074 29 6 5.2163 -3.7764 6.6658 30 7 2.1436 -1.4120 3.2723 31 7 1.4595 -0.6967 2.4532 32 1 0.6460 -0.2194 2.6796 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 0.0005 36 1 1.8934 -0.5138 -0.8899 37 1 3.1300 1.4425 0.0005 38 1 1.6767 1.9564 -0.8900 39 1 1.6766 1.9564 0.8899 40 1 3.8406 -1.7109 0.5254 41 1 3.4082 -2.8086 5.1036 42 1 3.8700 -5.7136 5.4100 43 1 4.6958 -5.6446 3.8328 44 1 5.7033 -7.3943 5.2355 45 1 6.8642 -6.0764 4.9687 46 1 7.6940 -7.6240 6.8063 47 1 7.5530 -6.8624 8.4211 48 1 9.9752 -8.9838 7.0579 49 1 7.6889 -3.9280 5.9041 50 1 8.1256 -3.6571 7.6151 51 1 5.4777 -2.7363 6.8604 52 1 4.2343 -3.9822 7.0917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980165992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:34 Heat of formation + Delta-G solvation = 21.252226 kcal Electronic energy + Delta-G solvation = -30667.188639 eV Core-core repulsion = 26666.982086 eV Total energy + Delta-G solvation = -4000.206552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -43.76652 -41.28965 -39.99960 -36.97124 -36.63217 -34.95582 -33.43202 -32.86296 -32.14771 -30.94306 -30.35027 -28.04990 -27.65328 -26.85838 -25.11583 -23.73125 -23.52616 -22.52017 -21.96042 -21.61657 -21.07140 -19.54719 -18.85328 -18.52800 -17.80895 -17.36845 -16.88343 -16.78741 -16.14748 -15.81472 -15.59694 -15.54865 -15.32103 -15.07628 -14.88932 -14.76160 -14.49184 -14.00980 -13.89610 -13.75325 -13.68528 -13.30022 -13.05622 -13.04460 -12.92766 -12.65630 -12.49570 -12.38972 -12.19596 -12.17745 -12.11438 -12.10404 -11.78988 -11.72910 -11.67697 -11.43850 -11.17239 -10.96119 -10.84792 -10.69350 -10.48704 -10.00574 -9.96856 -8.82813 -7.74996 -5.18124 0.48784 1.08845 1.44107 1.46338 1.54998 1.82452 2.20409 2.34257 2.49983 3.32636 3.34503 3.55352 3.69743 3.71975 3.75808 3.87351 4.05526 4.18448 4.19138 4.24175 4.29041 4.35394 4.41541 4.54990 4.58493 4.58740 4.67857 4.70022 4.74530 4.77813 4.79785 4.95095 4.96544 5.01844 5.07520 5.13282 5.16537 5.19333 5.25425 5.28337 5.35628 5.37256 5.38002 5.46443 5.47295 5.53100 5.58760 5.75882 5.89162 6.06163 6.36174 6.48488 6.86073 7.14067 7.19454 7.81622 8.46268 9.26114 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.002066 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.712948 B =13551.867838 C =14193.434214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.025 4.025 3 C -0.145 4.145 4 C 0.044 3.956 5 C -0.203 4.203 6 C -0.032 4.032 7 C 0.597 3.403 8 O -0.575 6.575 9 N -0.695 5.695 10 C 0.150 3.850 11 H 0.056 0.944 12 C -0.111 4.111 13 C -0.093 4.093 14 C -0.098 4.098 15 H 0.105 0.895 16 C 0.156 3.844 17 N -0.622 5.622 18 C -0.235 4.235 19 H 0.074 0.926 20 C -0.068 4.068 21 N -0.946 5.946 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.133 3.867 27 C -0.077 4.077 28 H 0.082 0.918 29 C -0.096 4.096 30 N -0.259 5.259 31 N -0.359 5.359 32 H 0.460 0.540 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.156 0.844 41 H 0.417 0.583 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.031 0.969 46 H 0.074 0.926 47 H -0.016 1.016 48 H 0.246 0.754 49 H 0.016 0.984 50 H 0.020 0.980 51 H 0.079 0.921 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.332 19.326 -10.613 34.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.045 4.045 3 C -0.203 4.203 4 C -0.083 4.083 5 C -0.232 4.232 6 C -0.191 4.191 7 C 0.382 3.618 8 O -0.452 6.452 9 N -0.346 5.346 10 C 0.046 3.954 11 H 0.075 0.925 12 C -0.150 4.150 13 C -0.131 4.131 14 C -0.117 4.117 15 H 0.123 0.877 16 C 0.031 3.969 17 N -0.348 5.348 18 C -0.365 4.365 19 H 0.091 0.909 20 C -0.261 4.261 21 N -0.596 5.596 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.199 1.199 26 C 0.008 3.992 27 C -0.096 4.096 28 H 0.100 0.900 29 C -0.134 4.134 30 N -0.096 5.096 31 N -0.076 5.076 32 H 0.308 0.692 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.173 0.827 41 H 0.254 0.746 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.002 0.998 48 H 0.056 0.944 49 H 0.034 0.966 50 H 0.038 0.962 51 H 0.097 0.903 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.999 18.906 -10.044 33.679 hybrid contribution 1.481 -0.304 -0.488 1.589 sum -24.517 18.602 -10.532 32.528 Atomic orbital electron populations 1.21917 0.92505 1.02661 1.03909 1.19916 0.97143 0.95832 0.91599 1.21876 1.01228 0.93946 1.03269 1.21690 0.95121 1.01782 0.89704 1.21673 1.00998 1.03860 0.96628 1.21710 0.97117 1.05529 0.94755 1.17269 0.83436 0.78969 0.82120 1.90809 1.35508 1.56420 1.62462 1.45748 1.29007 1.50149 1.09711 1.20888 0.90732 0.89438 0.94371 0.92535 1.21772 0.99157 0.93996 1.00036 1.21268 0.97604 0.98941 0.95288 1.22598 0.97673 0.95654 0.95760 0.87698 1.22070 0.86537 0.93500 0.94825 1.44863 1.07120 1.03954 1.78882 1.19410 0.86102 0.93752 1.37216 0.90852 1.25580 1.02388 0.95451 1.02662 1.70044 1.35347 0.98832 1.55409 0.85095 0.79830 0.76793 0.77737 1.21216 1.21820 1.19930 1.21419 0.92264 0.88381 0.97107 1.21177 0.93045 0.94814 1.00596 0.89958 1.21103 1.00375 1.00049 0.91829 1.73460 1.05672 1.09229 1.21250 1.43319 1.22594 1.35759 1.05963 0.69197 0.91545 0.89839 0.92459 0.87919 0.93141 0.89911 0.92259 0.82651 0.74553 0.89274 0.93665 0.92622 0.94979 0.90805 0.99836 0.94428 0.96567 0.96206 0.90266 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 8.95 71.98 0.64 0.17 16 2 C -0.02 -0.17 3.32 -11.54 -0.04 -0.21 16 3 C -0.15 -0.88 9.18 71.98 0.66 -0.22 16 4 C 0.04 0.60 5.92 41.40 0.25 0.85 16 5 C -0.20 -4.39 10.73 22.41 0.24 -4.15 16 6 C -0.03 -0.79 7.13 42.46 0.30 -0.48 16 7 C 0.60 18.40 7.80 86.75 0.68 19.08 16 8 O -0.57 -22.89 16.60 -3.92 -0.07 -22.96 16 9 N -0.70 -17.91 5.10 -445.31 -2.27 -20.18 16 10 C 0.15 4.50 2.31 45.04 0.10 4.61 16 11 H 0.06 2.19 6.22 -2.39 -0.01 2.17 16 12 C -0.11 -3.44 5.50 30.57 0.17 -3.28 16 13 C -0.09 -3.53 4.85 30.60 0.15 -3.39 16 14 C -0.10 -3.63 3.72 -9.32 -0.03 -3.66 16 15 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 16 C 0.16 7.90 5.18 87.15 0.45 8.35 16 17 N -0.62 -33.67 2.94 -690.43 -2.03 -35.69 16 18 C -0.24 -14.00 10.28 84.03 0.86 -13.13 16 19 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 21 N -0.95 -58.42 10.09 21.65 0.22 -58.20 16 22 Si 0.98 48.16 29.55 68.60 2.03 50.19 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 26 C 0.13 5.83 6.26 86.33 0.54 6.37 16 27 C -0.08 -2.57 2.69 -10.99 -0.03 -2.60 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 C -0.10 -2.40 4.83 29.85 0.14 -2.26 16 30 N -0.26 -4.98 11.92 -48.18 -0.57 -5.55 16 31 N -0.36 -4.44 6.64 -47.93 -0.32 -4.76 16 32 H 0.46 2.13 8.14 -219.99 -1.79 0.34 16 33 H 0.07 0.03 7.43 -2.39 -0.02 0.02 16 34 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.42 8.19 8.33 -92.71 -0.77 7.42 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.03 1.51 7.18 -2.39 -0.02 1.49 16 46 H 0.07 4.29 5.68 -2.39 -0.01 4.27 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 49 H 0.02 0.74 6.50 -2.39 -0.02 0.73 16 50 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.39 404.09 0.91 -78.47 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -1.63 Total: 16.26 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.55 Total: 2.43 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -4.97 Total: -124.39 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.07 Total: -22.96 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -79.39 0.91 -78.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980165992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.726 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds