Wall clock time and date at job start Wed Apr 1 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 C 1.50695 * 109.47536 * 119.99942 * 2 1 3 5 5 C 1.35365 * 126.38959 * 145.25844 * 4 2 1 6 6 C 1.41500 * 105.50445 * 180.16000 * 5 4 2 7 7 C 1.47714 * 126.51634 * 179.90825 * 6 5 4 8 8 O 1.21566 * 119.99813 * 359.70865 * 7 6 5 9 9 N 1.34775 * 119.99632 * 179.71328 * 7 6 5 10 10 C 1.46496 * 120.00125 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.02970 * 36.03293 * 10 9 7 12 12 C 1.52532 * 108.98503 * 277.11636 * 10 9 7 13 13 C 1.53809 * 111.69990 * 293.52033 * 12 10 9 14 14 C 1.51621 * 107.02993 * 302.46032 * 13 12 10 15 15 H 1.09001 * 111.26438 * 304.36066 * 14 13 12 16 16 C 1.53065 * 116.67446 * 176.24693 * 14 13 12 17 17 N 1.48656 * 103.43946 * 204.11598 * 16 14 13 18 18 C 1.36943 * 125.78299 * 204.33997 * 17 16 14 19 19 H 1.07994 * 120.00147 * 168.14008 * 18 17 16 20 20 C 1.38814 * 119.99831 * 348.14183 * 18 17 16 21 21 N 1.31621 * 119.99769 * 325.94138 * 20 18 17 22 22 Si 1.86800 * 120.00127 * 145.94622 * 20 18 17 23 23 H 1.48504 * 109.47043 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47130 * 239.99596 * 22 20 18 25 25 H 1.48502 * 109.46932 * 119.99608 * 22 20 18 26 26 C 1.48241 * 108.43689 * 24.61012 * 17 16 14 27 27 C 1.52302 * 105.87441 * 2.83089 * 26 17 16 28 28 H 1.08999 * 109.67018 * 87.95839 * 27 26 17 29 29 C 1.51445 * 117.57444 * 214.86467 * 27 26 17 30 30 N 1.31807 * 106.96063 * 359.64171 * 6 5 4 31 31 N 1.28458 * 110.07865 * 0.22464 * 30 6 5 32 32 H 0.97000 * 124.88850 * 179.97438 * 31 30 6 33 33 H 1.08999 * 109.47355 * 60.00383 * 1 2 3 34 34 H 1.09003 * 109.46790 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.46968 * 299.99859 * 1 2 3 36 36 H 1.09003 * 109.47276 * 240.00466 * 2 1 3 37 37 H 1.08993 * 109.47493 * 180.02562 * 3 2 1 38 38 H 1.09008 * 109.46793 * 300.00286 * 3 2 1 39 39 H 1.08999 * 109.47308 * 59.99722 * 3 2 1 40 40 H 1.08002 * 127.24431 * 0.05203 * 5 4 2 41 41 H 0.97005 * 120.00374 * 359.97438 * 9 7 6 42 42 H 1.08995 * 109.03309 * 54.09248 * 12 10 9 43 43 H 1.09004 * 109.03047 * 172.94831 * 12 10 9 44 44 H 1.09000 * 109.93997 * 183.08219 * 13 12 10 45 45 H 1.09002 * 109.94499 * 61.84385 * 13 12 10 46 46 H 1.09002 * 110.62170 * 85.63376 * 16 14 13 47 47 H 1.08997 * 110.76027 * 322.67185 * 16 14 13 48 48 H 0.97000 * 120.00175 * 354.25914 * 21 20 18 49 49 H 1.08992 * 110.17451 * 122.05133 * 26 17 16 50 50 H 1.09004 * 110.17066 * 243.85563 * 26 17 16 51 51 H 1.08990 * 109.94561 * 298.36066 * 29 27 26 52 52 H 1.09008 * 109.93662 * 59.59933 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 3.1444 -1.4774 1.3171 6 6 3.1923 -1.9238 2.6589 7 6 4.2219 -2.7969 3.2586 8 8 5.1416 -3.2079 2.5782 9 7 4.1415 -3.1378 4.5600 10 6 5.1623 -4.0042 5.1547 11 1 6.1304 -3.7676 4.7132 12 6 4.8182 -5.4584 4.8492 13 6 3.5249 -5.8975 5.5566 14 6 3.7327 -5.6726 7.0416 15 1 4.6201 -6.1942 7.4001 16 6 2.5368 -5.9572 7.9536 17 7 2.8084 -5.1192 9.1510 18 6 2.3260 -5.3451 10.4126 19 1 2.7289 -4.7965 11.2511 20 6 1.3193 -6.2795 10.6137 21 7 0.3913 -6.4545 9.6969 22 14 1.2816 -7.2882 12.1855 23 1 2.4281 -6.9043 13.0477 24 1 1.3768 -8.7316 11.8497 25 1 0.0101 -7.0309 12.9083 26 6 3.6845 -3.9938 8.7468 27 6 3.8789 -4.1365 7.2430 28 1 3.0779 -3.6155 6.7184 29 6 5.2235 -3.7413 6.6693 30 7 2.1467 -1.4077 3.2734 31 7 1.4596 -0.6968 2.4532 32 1 0.6462 -0.2193 2.6795 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 3.1299 1.4426 -0.0005 38 1 1.6766 1.9563 -0.8900 39 1 1.6766 1.9564 0.8899 40 1 3.8461 -1.7028 0.5277 41 1 3.4078 -2.8096 5.1030 42 1 4.6919 -5.5753 3.7729 43 1 5.6385 -6.0950 5.1808 44 1 3.3357 -6.9535 5.3635 45 1 2.6859 -5.2978 5.2035 46 1 2.5024 -7.0127 8.2234 47 1 1.6055 -5.6535 7.4756 48 1 0.3617 -5.8747 8.9199 49 1 3.2048 -3.0425 8.9769 50 1 4.6456 -4.0638 9.2564 51 1 5.4111 -2.6840 6.8557 52 1 6.0117 -4.3448 7.1197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980165997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:04 Heat of formation + Delta-G solvation = 41.825691 kcal Electronic energy + Delta-G solvation = -30951.010528 eV Core-core repulsion = 26951.696109 eV Total energy + Delta-G solvation = -3999.314420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.98751 -40.28503 -38.62292 -36.17601 -35.74529 -33.34844 -32.22312 -31.82592 -30.78004 -29.93434 -28.74232 -27.73678 -26.51231 -24.94798 -24.25952 -22.99597 -21.92657 -21.27553 -20.70123 -20.30043 -19.88686 -18.93832 -17.83238 -17.29106 -17.01439 -16.08420 -15.93179 -15.26482 -15.03953 -14.65212 -14.49231 -14.30438 -14.14790 -13.96559 -13.76751 -13.57230 -13.50593 -13.44253 -12.87478 -12.79451 -12.59446 -12.19052 -11.94149 -11.89584 -11.79061 -11.67326 -11.66884 -11.32171 -11.06822 -10.98866 -10.78623 -10.58643 -10.36280 -10.12613 -10.08554 -10.01107 -9.78960 -9.63750 -9.56629 -9.47626 -9.24846 -8.92196 -8.27638 -6.90295 -6.10125 -3.01075 1.41551 1.85250 2.55909 3.18118 3.37417 3.55627 3.58615 3.72635 4.05464 4.20365 4.35210 4.53238 4.61909 4.77728 4.83125 4.83634 5.00526 5.00733 5.06345 5.16746 5.17826 5.24435 5.30289 5.36204 5.44292 5.46460 5.50189 5.59300 5.60627 5.66570 5.68581 5.73327 5.79938 5.94361 6.07938 6.11290 6.16361 6.17406 6.20781 6.31477 6.36845 6.48735 6.58232 6.59537 6.69042 6.72910 6.94634 7.07686 7.16832 7.43355 7.71194 7.82125 8.20816 8.52830 9.05419 9.87294 10.45104 11.25223 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.002347 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.831801 B =11926.496151 C =12990.122348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 C -0.147 4.147 4 C 0.020 3.980 5 C -0.176 4.176 6 C -0.010 4.010 7 C 0.603 3.397 8 O -0.538 6.538 9 N -0.707 5.707 10 C 0.150 3.850 11 H 0.086 0.914 12 C -0.126 4.126 13 C -0.101 4.101 14 C -0.106 4.106 15 H 0.075 0.925 16 C 0.154 3.846 17 N -0.606 5.606 18 C -0.339 4.339 19 H 0.066 0.934 20 C -0.025 4.025 21 N -0.911 5.911 22 Si 1.060 2.940 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.296 1.296 26 C 0.144 3.856 27 C -0.106 4.106 28 H 0.066 0.934 29 C -0.109 4.109 30 N -0.254 5.254 31 N -0.377 5.377 32 H 0.443 0.557 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.161 0.839 41 H 0.407 0.593 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.023 0.977 48 H 0.268 0.732 49 H 0.024 0.976 50 H 0.025 0.975 51 H 0.068 0.932 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 13.920 -21.301 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.105 4.105 5 C -0.204 4.204 6 C -0.171 4.171 7 C 0.388 3.612 8 O -0.413 6.413 9 N -0.360 5.360 10 C 0.046 3.954 11 H 0.104 0.896 12 C -0.165 4.165 13 C -0.139 4.139 14 C -0.126 4.126 15 H 0.093 0.907 16 C 0.029 3.971 17 N -0.334 5.334 18 C -0.466 4.466 19 H 0.083 0.917 20 C -0.227 4.227 21 N -0.551 5.551 22 Si 0.890 3.110 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.224 1.224 26 C 0.019 3.981 27 C -0.126 4.126 28 H 0.084 0.916 29 C -0.147 4.147 30 N -0.090 5.090 31 N -0.091 5.091 32 H 0.288 0.712 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.179 0.821 41 H 0.244 0.756 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.079 0.921 49 H 0.042 0.958 50 H 0.043 0.957 51 H 0.087 0.913 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.507 12.386 -19.813 23.628 hybrid contribution 0.202 1.723 -1.054 2.030 sum 3.709 14.109 -20.866 25.460 Atomic orbital electron populations 1.21913 0.94120 1.02662 1.02556 1.19776 0.95922 0.95819 0.93111 1.21879 1.01954 0.94367 1.02242 1.21379 0.96521 1.03651 0.88990 1.21486 0.99470 1.02414 0.97030 1.21975 0.96782 1.04458 0.93909 1.16880 0.83428 0.79029 0.81897 1.90774 1.33845 1.55213 1.61486 1.46121 1.29342 1.50430 1.10081 1.21104 0.91471 0.89525 0.93261 0.89608 1.21912 0.98599 0.95211 1.00742 1.21281 0.97008 1.00960 0.94687 1.22161 1.00549 0.95588 0.94273 0.90663 1.21227 0.93311 0.95707 0.86831 1.45229 1.57500 1.24814 1.05832 1.19730 1.18953 1.25216 0.82694 0.91653 1.25614 0.91843 1.00557 1.04662 1.70721 1.28475 1.42847 1.13078 0.83640 0.75116 0.76957 0.75330 1.21871 1.21715 1.22370 1.20983 0.94444 0.91553 0.91161 1.21791 0.96297 0.97247 0.97223 0.91573 1.21593 0.98309 1.01843 0.92984 1.73610 1.05928 1.08635 1.20813 1.43281 1.22530 1.37022 1.06272 0.71196 0.91176 0.91872 0.92807 0.88318 0.91827 0.91595 0.92654 0.82111 0.75594 0.91662 0.91146 0.91886 0.92065 0.93174 0.95914 0.92107 0.95808 0.95682 0.91348 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 8.95 37.16 0.33 -0.29 16 2 C -0.03 -0.13 3.32 -91.77 -0.30 -0.44 16 3 C -0.15 -0.66 9.18 37.16 0.34 -0.32 16 4 C 0.02 0.17 5.92 -82.21 -0.49 -0.32 16 5 C -0.18 -1.90 10.73 -39.36 -0.42 -2.33 16 6 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 7 C 0.60 8.75 7.69 -12.39 -0.10 8.66 16 8 O -0.54 -9.00 16.47 5.31 0.09 -8.91 16 9 N -0.71 -9.51 4.65 -54.60 -0.25 -9.77 16 10 C 0.15 1.97 2.68 -67.74 -0.18 1.79 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 12 C -0.13 -1.70 5.41 -26.55 -0.14 -1.85 16 13 C -0.10 -1.55 5.57 -27.01 -0.15 -1.70 16 14 C -0.11 -1.91 2.49 -89.90 -0.22 -2.13 16 15 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 16 C 0.15 3.62 4.95 -2.82 -0.01 3.61 16 17 N -0.61 -15.64 3.38 -170.43 -0.58 -16.21 16 18 C -0.34 -9.78 9.99 -15.06 -0.15 -9.93 16 19 H 0.07 1.90 8.02 -52.49 -0.42 1.47 16 20 C -0.02 -0.73 4.98 -17.43 -0.09 -0.81 16 21 N -0.91 -27.95 12.88 55.49 0.71 -27.23 16 22 Si 1.06 25.93 30.03 -169.99 -5.10 20.82 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.14 3.02 6.99 -3.44 -0.02 2.99 16 27 C -0.11 -1.78 2.21 -90.37 -0.20 -1.98 16 28 H 0.07 1.12 6.14 -51.93 -0.32 0.80 16 29 C -0.11 -1.45 5.37 -27.08 -0.15 -1.60 16 30 N -0.25 -3.05 11.92 33.42 0.40 -2.65 16 31 N -0.38 -3.28 6.64 33.50 0.22 -3.06 16 32 H 0.44 2.53 8.14 -190.45 -1.55 0.98 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.18 7.43 -51.93 -0.39 -0.21 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 39 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.41 5.47 6.55 -40.82 -0.27 5.20 16 42 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 46 H 0.05 1.30 7.87 -51.93 -0.41 0.89 16 47 H 0.02 0.57 7.09 -51.93 -0.37 0.21 16 48 H 0.27 8.28 6.48 -40.82 -0.26 8.01 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.08 1.06 8.04 -51.92 -0.42 0.64 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -34.53 405.57 -10.84 -45.38 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -9.90 Total: 2.88 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.55 Total: -7.35 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.51 Total: -58.92 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.10 Total: 20.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.53 -10.84 -45.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980165997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.204 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds