Wall clock time and date at job start Wed Apr 1 2020 05:18:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53002 * 109.47073 * 2 1
4 4 C 1.50695 * 109.47536 * 119.99942 * 2 1 3
5 5 C 1.35365 * 126.38959 * 145.25844 * 4 2 1
6 6 C 1.41500 * 105.50445 * 180.16000 * 5 4 2
7 7 C 1.47714 * 126.51634 * 179.90825 * 6 5 4
8 8 O 1.21566 * 119.99813 * 359.70865 * 7 6 5
9 9 N 1.34775 * 119.99632 * 179.71328 * 7 6 5
10 10 C 1.46496 * 120.00125 * 179.97438 * 9 7 6
11 11 H 1.09007 * 109.02970 * 36.03293 * 10 9 7
12 12 C 1.52532 * 108.98503 * 277.11636 * 10 9 7
13 13 C 1.53809 * 111.69990 * 293.52033 * 12 10 9
14 14 C 1.51621 * 107.02993 * 302.46032 * 13 12 10
15 15 H 1.09001 * 111.26438 * 304.36066 * 14 13 12
16 16 C 1.53065 * 116.67446 * 176.24693 * 14 13 12
17 17 N 1.48656 * 103.43946 * 204.11598 * 16 14 13
18 18 C 1.36943 * 125.78299 * 204.33997 * 17 16 14
19 19 H 1.07994 * 120.00147 * 168.14008 * 18 17 16
20 20 C 1.38814 * 119.99831 * 348.14183 * 18 17 16
21 21 N 1.31621 * 119.99769 * 325.94138 * 20 18 17
22 22 Si 1.86800 * 120.00127 * 145.94622 * 20 18 17
23 23 H 1.48504 * 109.47043 * 359.97438 * 22 20 18
24 24 H 1.48496 * 109.47130 * 239.99596 * 22 20 18
25 25 H 1.48502 * 109.46932 * 119.99608 * 22 20 18
26 26 C 1.48241 * 108.43689 * 24.61012 * 17 16 14
27 27 C 1.52302 * 105.87441 * 2.83089 * 26 17 16
28 28 H 1.08999 * 109.67018 * 87.95839 * 27 26 17
29 29 C 1.51445 * 117.57444 * 214.86467 * 27 26 17
30 30 N 1.31807 * 106.96063 * 359.64171 * 6 5 4
31 31 N 1.28458 * 110.07865 * 0.22464 * 30 6 5
32 32 H 0.97000 * 124.88850 * 179.97438 * 31 30 6
33 33 H 1.08999 * 109.47355 * 60.00383 * 1 2 3
34 34 H 1.09003 * 109.46790 * 179.97438 * 1 2 3
35 35 H 1.08997 * 109.46968 * 299.99859 * 1 2 3
36 36 H 1.09003 * 109.47276 * 240.00466 * 2 1 3
37 37 H 1.08993 * 109.47493 * 180.02562 * 3 2 1
38 38 H 1.09008 * 109.46793 * 300.00286 * 3 2 1
39 39 H 1.08999 * 109.47308 * 59.99722 * 3 2 1
40 40 H 1.08002 * 127.24431 * 0.05203 * 5 4 2
41 41 H 0.97005 * 120.00374 * 359.97438 * 9 7 6
42 42 H 1.08995 * 109.03309 * 54.09248 * 12 10 9
43 43 H 1.09004 * 109.03047 * 172.94831 * 12 10 9
44 44 H 1.09000 * 109.93997 * 183.08219 * 13 12 10
45 45 H 1.09002 * 109.94499 * 61.84385 * 13 12 10
46 46 H 1.09002 * 110.62170 * 85.63376 * 16 14 13
47 47 H 1.08997 * 110.76027 * 322.67185 * 16 14 13
48 48 H 0.97000 * 120.00175 * 354.25914 * 21 20 18
49 49 H 1.08992 * 110.17451 * 122.05133 * 26 17 16
50 50 H 1.09004 * 110.17066 * 243.85563 * 26 17 16
51 51 H 1.08990 * 109.94561 * 298.36066 * 29 27 26
52 52 H 1.09008 * 109.93662 * 59.59933 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7104 1.2304
5 6 3.1444 -1.4774 1.3171
6 6 3.1923 -1.9238 2.6589
7 6 4.2219 -2.7969 3.2586
8 8 5.1416 -3.2079 2.5782
9 7 4.1415 -3.1378 4.5600
10 6 5.1623 -4.0042 5.1547
11 1 6.1304 -3.7676 4.7132
12 6 4.8182 -5.4584 4.8492
13 6 3.5249 -5.8975 5.5566
14 6 3.7327 -5.6726 7.0416
15 1 4.6201 -6.1942 7.4001
16 6 2.5368 -5.9572 7.9536
17 7 2.8084 -5.1192 9.1510
18 6 2.3260 -5.3451 10.4126
19 1 2.7289 -4.7965 11.2511
20 6 1.3193 -6.2795 10.6137
21 7 0.3913 -6.4545 9.6969
22 14 1.2816 -7.2882 12.1855
23 1 2.4281 -6.9043 13.0477
24 1 1.3768 -8.7316 11.8497
25 1 0.0101 -7.0309 12.9083
26 6 3.6845 -3.9938 8.7468
27 6 3.8789 -4.1365 7.2430
28 1 3.0779 -3.6155 6.7184
29 6 5.2235 -3.7413 6.6693
30 7 2.1467 -1.4077 3.2734
31 7 1.4596 -0.6968 2.4532
32 1 0.6462 -0.2193 2.6795
33 1 -0.3634 0.5138 -0.8900
34 1 -0.3633 -1.0277 -0.0005
35 1 -0.3633 0.5138 0.8900
36 1 1.8934 -0.5138 -0.8900
37 1 3.1299 1.4426 -0.0005
38 1 1.6766 1.9563 -0.8900
39 1 1.6766 1.9564 0.8899
40 1 3.8461 -1.7028 0.5277
41 1 3.4078 -2.8096 5.1030
42 1 4.6919 -5.5753 3.7729
43 1 5.6385 -6.0950 5.1808
44 1 3.3357 -6.9535 5.3635
45 1 2.6859 -5.2978 5.2035
46 1 2.5024 -7.0127 8.2234
47 1 1.6055 -5.6535 7.4756
48 1 0.3617 -5.8747 8.9199
49 1 3.2048 -3.0425 8.9769
50 1 4.6456 -4.0638 9.2564
51 1 5.4111 -2.6840 6.8557
52 1 6.0117 -4.3448 7.1197
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000980165997.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:18:34
Heat of formation + Delta-G solvation = 19.860806 kcal
Electronic energy + Delta-G solvation = -30951.962997 eV
Core-core repulsion = 26951.696109 eV
Total energy + Delta-G solvation = -4000.266889 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 29.11 seconds
Orbital eigenvalues (eV)
-43.78425 -41.55307 -39.95100 -37.29294 -36.65240 -34.92296 -33.65469 -32.93162
-32.07241 -30.86742 -30.29373 -28.13715 -28.01323 -26.74653 -25.30745 -23.65159
-23.51582 -22.06368 -22.00689 -21.63723 -21.26401 -20.19117 -19.41845 -18.57028
-17.93942 -17.10331 -16.92619 -16.26735 -16.16223 -16.04990 -15.79050 -15.54964
-15.49577 -15.14549 -15.02930 -14.80528 -14.54879 -14.46230 -14.07658 -13.91685
-13.67404 -13.24920 -13.11169 -13.07588 -12.78700 -12.73682 -12.49533 -12.39836
-12.37124 -12.19440 -12.11654 -11.99933 -11.88880 -11.69603 -11.65819 -11.55400
-11.26223 -11.14957 -10.93426 -10.51233 -10.45202 -10.03228 -9.99727 -9.03929
-8.40091 -5.26696 0.48289 1.08622 1.55972 1.63680 1.81107 1.82885
2.21943 2.34212 2.62435 3.11606 3.35203 3.43500 3.46372 3.53463
3.64737 3.73958 3.85067 4.03639 4.15329 4.18186 4.28989 4.36114
4.37857 4.39844 4.48321 4.55778 4.57987 4.62011 4.68819 4.73235
4.75375 4.82713 4.89371 4.93786 4.95807 4.99666 5.00487 5.04035
5.11465 5.14119 5.18315 5.29113 5.32862 5.35979 5.36800 5.37094
5.50396 5.54135 5.65249 6.03586 6.27786 6.41555 6.82591 6.85510
7.13011 7.69467 8.30533 8.95016
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.015349 B = 0.002347 C = 0.002155
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1823.831801 B =11926.496151 C =12990.122348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.023 4.023
3 C -0.145 4.145
4 C 0.041 3.959
5 C -0.197 4.197
6 C -0.036 4.036
7 C 0.603 3.397
8 O -0.565 6.565
9 N -0.704 5.704
10 C 0.153 3.847
11 H 0.095 0.905
12 C -0.118 4.118
13 C -0.093 4.093
14 C -0.092 4.092
15 H 0.081 0.919
16 C 0.160 3.840
17 N -0.630 5.630
18 C -0.349 4.349
19 H 0.060 0.940
20 C -0.079 4.079
21 N -0.938 5.938
22 Si 1.113 2.887
23 H -0.273 1.273
24 H -0.288 1.288
25 H -0.291 1.291
26 C 0.138 3.862
27 C -0.089 4.089
28 H 0.063 0.937
29 C -0.097 4.097
30 N -0.274 5.274
31 N -0.365 5.365
32 H 0.456 0.544
33 H 0.085 0.915
34 H 0.054 0.946
35 H 0.061 0.939
36 H 0.108 0.892
37 H 0.054 0.946
38 H 0.083 0.917
39 H 0.054 0.946
40 H 0.165 0.835
41 H 0.407 0.593
42 H 0.061 0.939
43 H 0.088 0.912
44 H 0.065 0.935
45 H 0.052 0.948
46 H 0.015 0.985
47 H -0.001 1.001
48 H 0.253 0.747
49 H 0.017 0.983
50 H 0.036 0.964
51 H 0.084 0.916
52 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.056 15.034 -22.327 27.388
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.043 4.043
3 C -0.202 4.202
4 C -0.086 4.086
5 C -0.225 4.225
6 C -0.195 4.195
7 C 0.388 3.612
8 O -0.443 6.443
9 N -0.356 5.356
10 C 0.049 3.951
11 H 0.113 0.887
12 C -0.156 4.156
13 C -0.132 4.132
14 C -0.112 4.112
15 H 0.100 0.900
16 C 0.035 3.965
17 N -0.358 5.358
18 C -0.477 4.477
19 H 0.077 0.923
20 C -0.275 4.275
21 N -0.580 5.580
22 Si 0.938 3.062
23 H -0.198 1.198
24 H -0.214 1.214
25 H -0.218 1.218
26 C 0.014 3.986
27 C -0.108 4.108
28 H 0.081 0.919
29 C -0.135 4.135
30 N -0.111 5.111
31 N -0.081 5.081
32 H 0.304 0.696
33 H 0.104 0.896
34 H 0.073 0.927
35 H 0.080 0.920
36 H 0.126 0.874
37 H 0.073 0.927
38 H 0.102 0.898
39 H 0.073 0.927
40 H 0.183 0.817
41 H 0.244 0.756
42 H 0.080 0.920
43 H 0.107 0.893
44 H 0.084 0.916
45 H 0.070 0.930
46 H 0.034 0.966
47 H 0.017 0.983
48 H 0.062 0.938
49 H 0.035 0.965
50 H 0.054 0.946
51 H 0.103 0.897
52 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 4.450 13.533 -20.834 25.238
hybrid contribution -0.153 1.473 -0.759 1.664
sum 4.297 15.005 -21.593 26.644
Atomic orbital electron populations
1.21928 0.93005 1.02514 1.03768 1.19917 0.96768 0.95974 0.91673
1.21870 1.01434 0.93805 1.03118 1.21810 0.95198 1.02048 0.89535
1.21680 1.00795 1.03514 0.96503 1.21925 0.97213 1.05441 0.94952
1.17089 0.83372 0.78839 0.81888 1.90745 1.35017 1.56431 1.62060
1.46125 1.29298 1.50230 1.09912 1.21116 0.91785 0.89174 0.92978
0.88739 1.21846 0.97816 0.95783 1.00154 1.21211 0.98014 1.01168
0.92763 1.22015 0.97817 0.96511 0.94815 0.90028 1.21110 0.94829
0.93320 0.87262 1.45556 1.57636 1.26924 1.05665 1.19989 1.18473
1.25166 0.84104 0.92257 1.27043 0.91577 1.01655 1.07247 1.70849
1.30065 1.43487 1.13594 0.82915 0.75907 0.75334 0.72045 1.19781
1.21415 1.21769 1.21160 0.93645 0.89658 0.94124 1.21665 0.98645
0.96206 0.94326 0.91856 1.21549 0.96135 1.03151 0.92667 1.73542
1.06221 1.09551 1.21775 1.43361 1.22525 1.36054 1.06175 0.69622
0.89638 0.92687 0.92042 0.87396 0.92665 0.89830 0.92708 0.81709
0.75602 0.92020 0.89336 0.91605 0.92960 0.96624 0.98341 0.93761
0.96526 0.94643 0.89711 0.88483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.88 8.95 71.98 0.64 -0.23 16
2 C -0.02 -0.19 3.32 -11.54 -0.04 -0.23 16
3 C -0.14 -0.97 9.18 71.98 0.66 -0.31 16
4 C 0.04 0.62 5.92 41.40 0.25 0.87 16
5 C -0.20 -4.16 10.73 22.41 0.24 -3.92 16
6 C -0.04 -0.92 7.13 42.46 0.30 -0.61 16
7 C 0.60 17.25 7.69 86.75 0.67 17.92 16
8 O -0.56 -18.66 16.47 -3.92 -0.06 -18.72 16
9 N -0.70 -18.28 4.65 -444.93 -2.07 -20.35 16
10 C 0.15 3.71 2.68 45.12 0.12 3.83 16
11 H 0.09 2.25 7.58 -2.38 -0.02 2.23 16
12 C -0.12 -2.95 5.41 30.71 0.17 -2.78 16
13 C -0.09 -2.80 5.57 30.41 0.17 -2.63 16
14 C -0.09 -3.27 2.49 -10.32 -0.03 -3.30 16
15 H 0.08 2.83 8.04 -2.39 -0.02 2.81 16
16 C 0.16 7.77 4.95 85.98 0.43 8.20 16
17 N -0.63 -33.22 3.38 -693.13 -2.34 -35.56 16
18 C -0.35 -20.54 9.99 84.03 0.84 -19.71 16
19 H 0.06 3.48 8.02 -2.91 -0.02 3.46 16
20 C -0.08 -4.69 4.98 84.86 0.42 -4.27 16
21 N -0.94 -59.44 12.88 21.65 0.28 -59.16 16
22 Si 1.11 52.87 30.03 68.60 2.06 54.93 16
23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
24 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16
25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16
26 C 0.14 5.77 6.99 85.81 0.60 6.37 16
27 C -0.09 -2.90 2.21 -10.63 -0.02 -2.92 16
28 H 0.06 2.11 6.14 -2.39 -0.01 2.10 16
29 C -0.10 -2.33 5.37 30.37 0.16 -2.17 16
30 N -0.27 -6.46 11.92 -48.18 -0.57 -7.04 16
31 N -0.36 -5.97 6.64 -47.93 -0.32 -6.28 16
32 H 0.46 4.55 8.14 -220.00 -1.79 2.76 16
33 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16
34 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16
35 H 0.06 0.26 7.43 -2.39 -0.02 0.24 16
36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16
37 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
38 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16
39 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16
40 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16
41 H 0.41 10.67 6.55 -92.70 -0.61 10.07 16
42 H 0.06 1.65 7.94 -2.39 -0.02 1.63 16
43 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16
44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
45 H 0.05 1.66 7.84 -2.39 -0.02 1.64 16
46 H 0.02 0.84 7.87 -2.39 -0.02 0.82 16
47 H 0.00 -0.06 7.09 -2.39 -0.02 -0.08 16
48 H 0.25 16.36 6.48 -92.71 -0.60 15.76 16
49 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
50 H 0.04 1.42 8.08 -2.38 -0.02 1.40 16
51 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
52 H 0.10 2.13 8.04 -2.38 -0.02 2.12 16
Total: -1.00 -77.13 405.57 1.25 -75.88
By element:
Atomic # 1 Polarization: 23.51 SS G_CDS: -1.30 Total: 22.21 kcal
Atomic # 6 Polarization: -11.48 SS G_CDS: 5.58 Total: -5.90 kcal
Atomic # 7 Polarization: -123.37 SS G_CDS: -5.03 Total: -128.39 kcal
Atomic # 8 Polarization: -18.66 SS G_CDS: -0.06 Total: -18.72 kcal
Atomic # 14 Polarization: 52.87 SS G_CDS: 2.06 Total: 54.93 kcal
Total: -77.13 1.25 -75.88 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000980165997.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.745 kcal
(2) G-P(sol) polarization free energy of solvation -77.133 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.612 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.884 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.861 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 29.11 seconds