Wall clock time and date at job start Wed Apr 1 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46671 * 2 1 4 4 C 1.50697 * 109.47180 * 119.99985 * 2 1 3 5 5 O 1.21280 * 119.99857 * 124.83174 * 4 2 1 6 6 N 1.34778 * 120.00229 * 304.83128 * 4 2 1 7 7 C 1.46497 * 119.99886 * 179.97438 * 6 4 2 8 8 H 1.08997 * 109.02425 * 36.06712 * 7 6 4 9 9 C 1.52524 * 109.03606 * 277.19549 * 7 6 4 10 10 C 1.53840 * 111.65594 * 293.47815 * 9 7 6 11 11 C 1.51436 * 107.04385 * 302.79636 * 10 9 7 12 12 H 1.08997 * 109.87349 * 305.81154 * 11 10 9 13 13 C 1.52292 * 117.60032 * 178.99797 * 11 10 9 14 14 N 1.48236 * 105.88614 * 214.90049 * 13 11 10 15 15 C 1.36943 * 125.78517 * 183.04336 * 14 13 11 16 16 H 1.08000 * 119.99727 * 177.75344 * 15 14 13 17 17 C 1.38805 * 120.00003 * 357.75782 * 15 14 13 18 18 N 1.31621 * 120.00247 * 159.50504 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 339.49239 * 17 15 14 20 20 H 1.48504 * 109.46907 * 66.08398 * 19 17 15 21 21 H 1.48506 * 109.47164 * 186.08070 * 19 17 15 22 22 H 1.48493 * 109.47582 * 306.08503 * 19 17 15 23 23 C 1.48662 * 108.42923 * 2.77859 * 14 13 11 24 24 C 1.53056 * 103.44070 * 24.64561 * 23 14 13 25 25 H 1.09002 * 110.56120 * 76.73684 * 24 23 14 26 26 C 1.51624 * 116.67121 * 204.11033 * 24 23 14 27 27 C 1.50698 * 109.47146 * 240.00301 * 2 1 3 28 28 C 1.34663 * 126.59141 * 4.71895 * 27 2 1 29 29 N 1.34130 * 108.01845 * 179.97438 * 28 27 2 30 30 C 1.30497 * 109.25606 * 359.97438 * 29 28 27 31 31 N 1.35042 * 108.70020 * 359.76742 * 30 29 28 32 32 H 0.97003 * 126.39562 * 180.27535 * 31 30 29 33 33 H 1.08993 * 109.47293 * 299.99393 * 1 2 3 34 34 H 1.08998 * 109.46966 * 60.00146 * 1 2 3 35 35 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 36 36 H 1.08995 * 109.46861 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.47457 * 300.00175 * 3 2 1 38 38 H 1.09005 * 109.47060 * 60.00419 * 3 2 1 39 39 H 0.97000 * 119.99774 * 359.97438 * 6 4 2 40 40 H 1.08994 * 109.04343 * 54.03877 * 9 7 6 41 41 H 1.09001 * 109.04675 * 172.91767 * 9 7 6 42 42 H 1.09007 * 109.94372 * 62.18200 * 10 9 7 43 43 H 1.09006 * 109.94415 * 183.41214 * 10 9 7 44 44 H 1.09008 * 110.28287 * 95.73083 * 13 11 10 45 45 H 1.08999 * 110.04555 * 333.94530 * 13 11 10 46 46 H 0.97000 * 119.99817 * 4.99640 * 18 17 15 47 47 H 1.09000 * 110.62158 * 143.13162 * 23 14 13 48 48 H 1.08993 * 110.62823 * 265.99277 * 23 14 13 49 49 H 1.09004 * 109.94309 * 295.62850 * 26 24 23 50 50 H 1.09007 * 109.93972 * 56.86686 * 26 24 23 51 51 H 1.08004 * 125.99159 * 359.95806 * 28 27 2 52 52 H 1.08004 * 125.64463 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.8001 -1.6429 1.1213 6 7 1.6285 -0.3095 2.4522 7 6 2.1165 -1.0005 3.6482 8 1 3.1528 -1.2981 3.4887 9 6 1.2720 -2.2492 3.8807 10 6 -0.1794 -1.8931 4.2458 11 6 -0.1242 -1.0112 5.4757 12 1 0.4446 -1.5073 6.2620 13 6 -1.4439 -0.4955 6.0339 14 7 -1.1609 0.8634 6.5543 15 6 -2.0545 1.6757 7.2000 16 1 -1.7372 2.6381 7.5736 17 6 -3.3680 1.2622 7.3745 18 7 -4.1128 1.8132 8.3094 19 14 -4.0787 -0.0763 6.2823 20 1 -3.3809 -1.3588 6.5534 21 1 -5.5277 -0.2310 6.5682 22 1 -3.8924 0.2969 4.8571 23 6 0.2591 1.1923 6.2621 24 6 0.5886 0.3073 5.0576 25 1 0.1593 0.7249 4.1468 26 6 2.0499 -0.0377 4.8460 27 6 2.0324 -0.7103 -1.2305 28 6 1.2840 -1.1913 -2.2415 29 7 2.1093 -1.7495 -3.1394 30 6 3.3407 -1.6323 -2.7235 31 7 3.3376 -0.9848 -1.5384 32 1 4.1149 -0.7582 -1.0043 33 1 -0.3633 0.5137 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6766 1.9564 0.8901 39 1 1.0148 0.4366 2.5395 40 1 1.2726 -2.8529 2.9732 41 1 1.7108 -2.8293 4.6925 42 1 -0.6483 -1.3539 3.4225 43 1 -0.7413 -2.8012 4.4644 44 1 -1.7916 -1.1418 6.8399 45 1 -2.1910 -0.4465 5.2417 46 1 -3.7686 2.5573 8.8278 47 1 0.3639 2.2462 6.0044 48 1 0.8941 0.9409 7.1115 49 1 2.6177 0.8669 4.6280 50 1 2.4498 -0.5234 5.7362 51 1 0.2079 -1.1372 -2.3161 52 1 4.2173 -1.9900 -3.2432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980210823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:12 Heat of formation + Delta-G solvation = 45.877035 kcal Electronic energy + Delta-G solvation = -32119.618221 eV Core-core repulsion = 28120.479481 eV Total energy + Delta-G solvation = -3999.138740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.41514 -40.70253 -39.20818 -36.11069 -35.66315 -33.37148 -32.57352 -32.04898 -31.12256 -29.33528 -28.76350 -27.69341 -27.05168 -24.94023 -24.23768 -22.23151 -21.75846 -21.38121 -21.06111 -20.34878 -20.18977 -19.19650 -18.37840 -17.42832 -16.93031 -16.21716 -15.57347 -15.35657 -15.05990 -14.94972 -14.49676 -14.46610 -14.36922 -14.09245 -13.73102 -13.66985 -13.55983 -13.28581 -13.01214 -12.71507 -12.68297 -12.54223 -12.46882 -12.08602 -12.05643 -11.93402 -11.65781 -11.61059 -11.37825 -11.00219 -10.92961 -10.61434 -10.34660 -10.25328 -10.14892 -9.95832 -9.90081 -9.75523 -9.49370 -9.19891 -8.93336 -8.59641 -8.59554 -7.07709 -6.32031 -3.17718 1.80995 2.37263 2.87696 2.92553 3.08317 3.39312 3.47060 3.68466 4.10269 4.31523 4.48307 4.51470 4.56511 4.59616 4.61997 4.70460 4.77290 4.84062 5.08524 5.12214 5.16988 5.20204 5.30804 5.32346 5.36007 5.37704 5.43470 5.45584 5.50760 5.58114 5.64779 5.68906 5.75290 5.79326 5.90972 5.94108 6.01485 6.03086 6.07738 6.12765 6.18581 6.35089 6.37314 6.46179 6.51380 6.58320 6.74082 6.81288 7.16422 7.28899 7.59527 7.86387 7.96484 8.31025 9.03342 9.56939 10.23811 11.19027 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.002800 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.037449 B = 9996.792525 C =10452.267975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.006 4.006 3 C -0.141 4.141 4 C 0.522 3.478 5 O -0.541 6.541 6 N -0.716 5.716 7 C 0.150 3.850 8 H 0.083 0.917 9 C -0.125 4.125 10 C -0.104 4.104 11 C -0.101 4.101 12 H 0.075 0.925 13 C 0.115 3.885 14 N -0.616 5.616 15 C -0.324 4.324 16 H 0.077 0.923 17 C -0.026 4.026 18 N -0.927 5.927 19 Si 1.068 2.932 20 H -0.281 1.281 21 H -0.302 1.302 22 H -0.299 1.299 23 C 0.145 3.855 24 C -0.109 4.109 25 H 0.072 0.928 26 C -0.112 4.112 27 C 0.006 3.994 28 C -0.020 4.020 29 N -0.496 5.496 30 C 0.182 3.818 31 N -0.548 5.548 32 H 0.419 0.581 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.402 0.598 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.030 0.970 46 H 0.261 0.739 47 H 0.043 0.957 48 H 0.027 0.973 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.168 0.832 52 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.806 -4.128 -17.931 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.011 4.011 3 C -0.199 4.199 4 C 0.307 3.693 5 O -0.418 6.418 6 N -0.368 5.368 7 C 0.046 3.954 8 H 0.101 0.899 9 C -0.164 4.164 10 C -0.142 4.142 11 C -0.120 4.120 12 H 0.093 0.907 13 C -0.010 4.010 14 N -0.345 5.345 15 C -0.451 4.451 16 H 0.095 0.905 17 C -0.225 4.225 18 N -0.569 5.569 19 Si 0.902 3.098 20 H -0.208 1.208 21 H -0.230 1.230 22 H -0.228 1.228 23 C 0.019 3.981 24 C -0.129 4.129 25 H 0.091 0.909 26 C -0.150 4.150 27 C -0.111 4.111 28 C -0.169 4.169 29 N -0.215 5.215 30 C -0.102 4.102 31 N -0.149 5.149 32 H 0.257 0.743 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.238 0.762 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.088 0.912 50 H 0.100 0.900 51 H 0.186 0.814 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 15.676 -6.039 -18.946 25.321 hybrid contribution 1.737 1.810 1.291 2.822 sum 17.413 -4.228 -17.655 25.156 Atomic orbital electron populations 1.21896 0.90516 1.03771 1.03803 1.19251 0.97952 0.95242 0.88640 1.21908 1.01258 0.92887 1.03799 1.20413 0.80746 0.83608 0.84491 1.90684 1.35693 1.28760 1.86683 1.46238 1.49000 1.36122 1.05464 1.21062 0.98294 0.92143 0.83884 0.89889 1.21902 0.95674 0.96918 1.01896 1.21293 0.95872 0.99694 0.97292 1.21816 0.97790 0.95414 0.96942 0.90708 1.21728 0.94696 0.87955 0.96577 1.45405 1.06955 1.13157 1.68934 1.20107 0.91287 1.01109 1.32589 0.90484 1.25739 0.92942 1.04328 0.99510 1.70931 1.41708 1.24938 1.19345 0.83905 0.74761 0.76059 0.75035 1.20848 1.23029 1.22775 1.21309 0.86886 0.96527 0.93355 1.22120 0.94315 0.97022 0.99398 0.90935 1.21659 0.97134 0.98820 0.97388 1.20469 0.84352 1.07589 0.98701 1.22056 0.99597 1.03149 0.92078 1.70281 1.00127 1.21371 1.29688 1.24902 0.98059 1.00512 0.86738 1.43105 1.08295 1.44361 1.19168 0.74329 0.90937 0.90406 0.91126 0.92454 0.90642 0.90973 0.76156 0.91614 0.91172 0.91865 0.91668 0.93009 0.95254 0.92928 0.93878 0.95533 0.91233 0.89978 0.81442 0.77792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.28 37.16 0.27 -0.80 16 2 C -0.01 -0.05 0.85 -156.81 -0.13 -0.19 16 3 C -0.14 -0.94 8.41 37.16 0.31 -0.62 16 4 C 0.52 5.48 6.34 -10.99 -0.07 5.41 16 5 O -0.54 -7.33 15.01 5.56 0.08 -7.25 16 6 N -0.72 -6.87 4.50 -53.63 -0.24 -7.11 16 7 C 0.15 1.56 2.67 -67.75 -0.18 1.38 16 8 H 0.08 0.90 7.59 -51.93 -0.39 0.51 16 9 C -0.13 -1.41 5.41 -26.54 -0.14 -1.55 16 10 C -0.10 -1.33 5.57 -27.08 -0.15 -1.48 16 11 C -0.10 -1.55 2.29 -90.38 -0.21 -1.75 16 12 H 0.07 1.12 7.92 -51.93 -0.41 0.71 16 13 C 0.11 2.38 4.27 -3.45 -0.01 2.37 16 14 N -0.62 -14.53 3.42 -170.44 -0.58 -15.11 16 15 C -0.32 -9.12 10.56 -15.06 -0.16 -9.28 16 16 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 17 C -0.03 -0.76 5.49 -17.43 -0.10 -0.85 16 18 N -0.93 -29.06 13.70 55.49 0.76 -28.30 16 19 Si 1.07 26.45 24.56 -169.99 -4.17 22.27 16 20 H -0.28 -6.35 5.18 56.52 0.29 -6.06 16 21 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 22 H -0.30 -7.06 6.84 56.52 0.39 -6.68 16 23 C 0.14 2.66 6.89 -2.82 -0.02 2.64 16 24 C -0.11 -1.52 2.38 -89.90 -0.21 -1.73 16 25 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 26 C -0.11 -1.18 5.37 -27.00 -0.15 -1.32 16 27 C 0.01 0.06 5.17 -81.61 -0.42 -0.36 16 28 C -0.02 -0.23 10.86 -17.81 -0.19 -0.42 16 29 N -0.50 -6.02 11.25 -14.66 -0.16 -6.18 16 30 C 0.18 1.68 13.04 -90.38 -1.18 0.50 16 31 N -0.55 -4.91 5.55 -10.30 -0.06 -4.96 16 32 H 0.42 3.05 8.85 -40.82 -0.36 2.68 16 33 H 0.07 0.51 7.31 -51.93 -0.38 0.13 16 34 H 0.08 0.49 7.79 -51.93 -0.40 0.08 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 39 H 0.40 3.53 5.73 -40.82 -0.23 3.29 16 40 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 1.17 6.11 -51.92 -0.32 0.85 16 45 H 0.03 0.64 4.60 -51.93 -0.24 0.41 16 46 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 0.85 7.98 -51.92 -0.41 0.43 16 51 H 0.17 1.57 7.32 -52.48 -0.38 1.19 16 52 H 0.21 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -35.48 391.18 -9.83 -45.31 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.60 Total: 3.51 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.75 Total: -8.07 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.29 Total: -61.67 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.08 Total: -7.25 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.17 Total: 22.27 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.48 -9.83 -45.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980210823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.184 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds