Wall clock time and date at job start Wed Apr 1 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46671 * 2 1 4 4 C 1.50697 * 109.47180 * 119.99985 * 2 1 3 5 5 O 1.21280 * 119.99857 * 124.83174 * 4 2 1 6 6 N 1.34778 * 120.00229 * 304.83128 * 4 2 1 7 7 C 1.46497 * 119.99886 * 179.97438 * 6 4 2 8 8 H 1.08997 * 109.02425 * 36.06712 * 7 6 4 9 9 C 1.52524 * 109.03606 * 277.19549 * 7 6 4 10 10 C 1.53840 * 111.65594 * 293.47815 * 9 7 6 11 11 C 1.51436 * 107.04385 * 302.79636 * 10 9 7 12 12 H 1.08997 * 109.87349 * 305.81154 * 11 10 9 13 13 C 1.52292 * 117.60032 * 178.99797 * 11 10 9 14 14 N 1.48236 * 105.88614 * 214.90049 * 13 11 10 15 15 C 1.36943 * 125.78517 * 183.04336 * 14 13 11 16 16 H 1.08000 * 119.99727 * 177.75344 * 15 14 13 17 17 C 1.38805 * 120.00003 * 357.75782 * 15 14 13 18 18 N 1.31621 * 120.00247 * 159.50504 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 339.49239 * 17 15 14 20 20 H 1.48504 * 109.46907 * 66.08398 * 19 17 15 21 21 H 1.48506 * 109.47164 * 186.08070 * 19 17 15 22 22 H 1.48493 * 109.47582 * 306.08503 * 19 17 15 23 23 C 1.48662 * 108.42923 * 2.77859 * 14 13 11 24 24 C 1.53056 * 103.44070 * 24.64561 * 23 14 13 25 25 H 1.09002 * 110.56120 * 76.73684 * 24 23 14 26 26 C 1.51624 * 116.67121 * 204.11033 * 24 23 14 27 27 C 1.50698 * 109.47146 * 240.00301 * 2 1 3 28 28 C 1.34663 * 126.59141 * 4.71895 * 27 2 1 29 29 N 1.34130 * 108.01845 * 179.97438 * 28 27 2 30 30 C 1.30497 * 109.25606 * 359.97438 * 29 28 27 31 31 N 1.35042 * 108.70020 * 359.76742 * 30 29 28 32 32 H 0.97003 * 126.39562 * 180.27535 * 31 30 29 33 33 H 1.08993 * 109.47293 * 299.99393 * 1 2 3 34 34 H 1.08998 * 109.46966 * 60.00146 * 1 2 3 35 35 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 36 36 H 1.08995 * 109.46861 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.47457 * 300.00175 * 3 2 1 38 38 H 1.09005 * 109.47060 * 60.00419 * 3 2 1 39 39 H 0.97000 * 119.99774 * 359.97438 * 6 4 2 40 40 H 1.08994 * 109.04343 * 54.03877 * 9 7 6 41 41 H 1.09001 * 109.04675 * 172.91767 * 9 7 6 42 42 H 1.09007 * 109.94372 * 62.18200 * 10 9 7 43 43 H 1.09006 * 109.94415 * 183.41214 * 10 9 7 44 44 H 1.09008 * 110.28287 * 95.73083 * 13 11 10 45 45 H 1.08999 * 110.04555 * 333.94530 * 13 11 10 46 46 H 0.97000 * 119.99817 * 4.99640 * 18 17 15 47 47 H 1.09000 * 110.62158 * 143.13162 * 23 14 13 48 48 H 1.08993 * 110.62823 * 265.99277 * 23 14 13 49 49 H 1.09004 * 109.94309 * 295.62850 * 26 24 23 50 50 H 1.09007 * 109.93972 * 56.86686 * 26 24 23 51 51 H 1.08004 * 125.99159 * 359.95806 * 28 27 2 52 52 H 1.08004 * 125.64463 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.8001 -1.6429 1.1213 6 7 1.6285 -0.3095 2.4522 7 6 2.1165 -1.0005 3.6482 8 1 3.1528 -1.2981 3.4887 9 6 1.2720 -2.2492 3.8807 10 6 -0.1794 -1.8931 4.2458 11 6 -0.1242 -1.0112 5.4757 12 1 0.4446 -1.5073 6.2620 13 6 -1.4439 -0.4955 6.0339 14 7 -1.1609 0.8634 6.5543 15 6 -2.0545 1.6757 7.2000 16 1 -1.7372 2.6381 7.5736 17 6 -3.3680 1.2622 7.3745 18 7 -4.1128 1.8132 8.3094 19 14 -4.0787 -0.0763 6.2823 20 1 -3.3809 -1.3588 6.5534 21 1 -5.5277 -0.2310 6.5682 22 1 -3.8924 0.2969 4.8571 23 6 0.2591 1.1923 6.2621 24 6 0.5886 0.3073 5.0576 25 1 0.1593 0.7249 4.1468 26 6 2.0499 -0.0377 4.8460 27 6 2.0324 -0.7103 -1.2305 28 6 1.2840 -1.1913 -2.2415 29 7 2.1093 -1.7495 -3.1394 30 6 3.3407 -1.6323 -2.7235 31 7 3.3376 -0.9848 -1.5384 32 1 4.1149 -0.7582 -1.0043 33 1 -0.3633 0.5137 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6766 1.9564 0.8901 39 1 1.0148 0.4366 2.5395 40 1 1.2726 -2.8529 2.9732 41 1 1.7108 -2.8293 4.6925 42 1 -0.6483 -1.3539 3.4225 43 1 -0.7413 -2.8012 4.4644 44 1 -1.7916 -1.1418 6.8399 45 1 -2.1910 -0.4465 5.2417 46 1 -3.7686 2.5573 8.8278 47 1 0.3639 2.2462 6.0044 48 1 0.8941 0.9409 7.1115 49 1 2.6177 0.8669 4.6280 50 1 2.4498 -0.5234 5.7362 51 1 0.2079 -1.1372 -2.3161 52 1 4.2173 -1.9900 -3.2432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980210823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:10 Heat of formation + Delta-G solvation = 22.224021 kcal Electronic energy + Delta-G solvation = -32120.643893 eV Core-core repulsion = 28120.479481 eV Total energy + Delta-G solvation = -4000.164412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.12630 -41.65542 -40.27862 -37.36917 -36.40990 -34.85223 -33.62235 -33.28076 -32.33654 -30.69141 -29.52679 -28.43385 -28.19776 -26.51368 -24.98393 -23.25131 -22.99570 -22.31471 -22.05025 -21.81582 -20.93987 -20.17708 -19.52602 -19.11403 -17.64922 -17.14898 -16.90969 -16.38430 -16.21234 -15.91572 -15.52759 -15.44392 -15.23334 -15.11466 -14.99112 -14.83592 -14.68176 -14.40613 -14.15425 -13.86031 -13.59007 -13.31162 -13.20963 -13.14136 -13.13443 -13.03913 -12.82513 -12.57127 -12.48515 -12.23954 -12.13924 -12.00468 -11.75015 -11.42444 -11.29473 -11.06778 -11.02645 -10.89504 -10.80496 -10.70978 -10.53886 -10.01555 -9.32116 -9.10423 -8.62353 -5.39044 1.10673 1.40927 1.50108 1.59266 1.71061 2.12832 2.28377 2.33085 2.55877 3.07335 3.31993 3.44478 3.46240 3.61825 3.71214 3.77211 3.90547 3.92426 4.05685 4.08647 4.20777 4.35757 4.39135 4.51111 4.51816 4.55497 4.63202 4.64316 4.66542 4.68635 4.73958 4.77330 4.82387 4.86882 4.91846 4.96309 5.04376 5.05739 5.15015 5.16079 5.17659 5.18387 5.35602 5.36635 5.39374 5.50331 5.55947 5.58552 5.79044 6.10476 6.49390 6.57527 6.84046 7.14708 7.19405 7.48610 8.14134 8.90476 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.002800 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.037449 B = 9996.792525 C =10452.267975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.000 4.000 3 C -0.138 4.138 4 C 0.524 3.476 5 O -0.572 6.572 6 N -0.709 5.709 7 C 0.156 3.844 8 H 0.086 0.914 9 C -0.118 4.118 10 C -0.098 4.098 11 C -0.093 4.093 12 H 0.082 0.918 13 C 0.107 3.893 14 N -0.639 5.639 15 C -0.308 4.308 16 H 0.047 0.953 17 C -0.087 4.087 18 N -0.966 5.966 19 Si 1.104 2.896 20 H -0.248 1.248 21 H -0.317 1.317 22 H -0.280 1.280 23 C 0.138 3.862 24 C -0.091 4.091 25 H 0.080 0.920 26 C -0.100 4.100 27 C 0.002 3.998 28 C -0.043 4.043 29 N -0.536 5.536 30 C 0.184 3.816 31 N -0.545 5.545 32 H 0.427 0.573 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.408 0.592 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.246 0.754 47 H 0.041 0.959 48 H 0.031 0.969 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.174 0.826 52 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.008 -5.114 -19.741 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.005 4.005 3 C -0.196 4.196 4 C 0.310 3.690 5 O -0.452 6.452 6 N -0.361 5.361 7 C 0.051 3.949 8 H 0.104 0.896 9 C -0.156 4.156 10 C -0.136 4.136 11 C -0.112 4.112 12 H 0.101 0.899 13 C -0.017 4.017 14 N -0.367 5.367 15 C -0.437 4.437 16 H 0.065 0.935 17 C -0.279 4.279 18 N -0.611 5.611 19 Si 0.932 3.068 20 H -0.174 1.174 21 H -0.246 1.246 22 H -0.207 1.207 23 C 0.013 3.987 24 C -0.111 4.111 25 H 0.098 0.902 26 C -0.138 4.138 27 C -0.116 4.116 28 C -0.191 4.191 29 N -0.256 5.256 30 C -0.100 4.100 31 N -0.147 5.147 32 H 0.266 0.734 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.246 0.754 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.191 0.809 52 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 17.941 -7.014 -20.764 28.323 hybrid contribution 1.147 2.189 1.898 3.116 sum 19.088 -4.826 -18.866 27.268 Atomic orbital electron populations 1.21931 0.89869 1.03415 1.04839 1.19252 0.98364 0.95819 0.87018 1.21918 1.01378 0.91601 1.04685 1.20696 0.80084 0.83109 0.85064 1.90674 1.37178 1.30190 1.87116 1.46181 1.48787 1.36058 1.05121 1.20981 0.98296 0.91724 0.83870 0.89624 1.21828 0.94612 0.97320 1.01854 1.21264 0.97188 0.99261 0.95897 1.21747 0.94762 0.96516 0.98144 0.89924 1.21808 0.97747 0.86268 0.95853 1.45540 1.08350 1.13999 1.68814 1.20023 0.92137 1.00329 1.31219 0.93547 1.27010 0.93901 1.06734 1.00259 1.71044 1.42619 1.26004 1.21471 0.83511 0.73413 0.75519 0.74329 1.17354 1.24606 1.20699 1.21518 0.84117 0.97527 0.95501 1.21988 0.96726 0.94874 0.97488 0.90162 1.21598 0.94527 0.99771 0.97875 1.20687 0.84639 1.07375 0.98892 1.22297 1.00207 1.03899 0.92662 1.70254 1.01484 1.22896 1.30939 1.25585 0.98360 0.99398 0.86667 1.43144 1.08349 1.44026 1.19165 0.73397 0.90106 0.89211 0.92184 0.92308 0.90037 0.89837 0.75444 0.92447 0.90092 0.91710 0.91340 0.95000 0.95479 0.94516 0.94086 0.95119 0.89380 0.89076 0.80854 0.74514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.28 71.98 0.52 -1.30 16 2 C 0.00 0.00 0.85 -53.67 -0.05 -0.04 16 3 C -0.14 -1.44 8.41 71.98 0.61 -0.84 16 4 C 0.52 9.57 6.34 87.66 0.56 10.12 16 5 O -0.57 -14.16 15.01 -3.03 -0.05 -14.21 16 6 N -0.71 -11.13 4.50 -441.98 -1.99 -13.12 16 7 C 0.16 2.62 2.67 45.11 0.12 2.74 16 8 H 0.09 1.52 7.59 -2.39 -0.02 1.50 16 9 C -0.12 -2.22 5.41 30.72 0.17 -2.05 16 10 C -0.10 -2.18 5.57 30.37 0.17 -2.01 16 11 C -0.09 -2.56 2.29 -10.64 -0.02 -2.58 16 12 H 0.08 2.18 7.92 -2.39 -0.02 2.17 16 13 C 0.11 4.24 4.27 85.81 0.37 4.60 16 14 N -0.64 -29.59 3.42 -693.16 -2.37 -31.96 16 15 C -0.31 -17.69 10.56 84.03 0.89 -16.80 16 16 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 17 C -0.09 -5.18 5.49 84.86 0.47 -4.71 16 18 N -0.97 -62.70 13.70 21.65 0.30 -62.40 16 19 Si 1.10 53.34 24.56 68.60 1.68 55.03 16 20 H -0.25 -10.62 5.18 99.48 0.52 -10.11 16 21 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 22 H -0.28 -12.47 6.84 99.48 0.68 -11.78 16 23 C 0.14 4.80 6.89 85.98 0.59 5.39 16 24 C -0.09 -2.24 2.38 -10.32 -0.02 -2.26 16 25 H 0.08 1.88 6.31 -2.39 -0.02 1.86 16 26 C -0.10 -1.67 5.37 30.42 0.16 -1.51 16 27 C 0.00 0.03 5.17 40.95 0.21 0.24 16 28 C -0.04 -0.92 10.86 83.52 0.91 -0.01 16 29 N -0.54 -12.55 11.25 -200.31 -2.25 -14.80 16 30 C 0.18 3.11 13.04 180.26 2.35 5.46 16 31 N -0.55 -8.78 5.55 -186.50 -1.03 -9.82 16 32 H 0.43 5.35 8.85 -92.71 -0.82 4.53 16 33 H 0.08 0.89 7.31 -2.39 -0.02 0.87 16 34 H 0.09 0.93 7.79 -2.39 -0.02 0.91 16 35 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.69 7.91 -2.38 -0.02 0.67 16 39 H 0.41 5.56 5.73 -92.71 -0.53 5.03 16 40 H 0.06 1.23 7.93 -2.39 -0.02 1.21 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.44 7.93 -2.38 -0.02 1.42 16 43 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.03 1.39 6.11 -2.38 -0.01 1.37 16 45 H 0.03 1.12 4.60 -2.39 -0.01 1.11 16 46 H 0.25 16.00 8.73 -92.71 -0.81 15.19 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.09 1.46 7.98 -2.38 -0.02 1.44 16 51 H 0.17 3.18 7.32 -2.91 -0.02 3.15 16 52 H 0.24 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -79.65 391.18 1.61 -78.04 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.67 Total: 18.81 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 7.99 Total: -5.57 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -7.35 Total: -132.10 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.05 Total: -14.21 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 1.68 Total: 55.03 kcal Total: -79.65 1.61 -78.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980210823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.266 kcal (2) G-P(sol) polarization free energy of solvation -79.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds