Wall clock time and date at job start Wed Apr 1 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 C 1.50702 * 109.47507 * 180.02562 * 3 2 1 5 5 C 1.35362 * 126.38768 * 84.99614 * 4 3 2 6 6 C 1.41498 * 105.50260 * 179.73939 * 5 4 3 7 7 C 1.47717 * 126.51795 * 180.29604 * 6 5 4 8 8 O 1.21573 * 119.99555 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99930 * 180.02562 * 7 6 5 10 10 C 1.47201 * 126.70313 * 359.68781 * 9 7 6 11 11 C 1.54091 * 106.23767 * 148.58235 * 10 9 7 12 12 C 1.53001 * 111.90783 * 141.22510 * 11 10 9 13 13 C 1.54315 * 109.27831 * 267.05964 * 11 10 9 14 14 N 1.48106 * 104.71534 * 136.30796 * 13 11 10 15 15 C 1.36936 * 127.84633 * 140.21643 * 14 13 11 16 16 H 1.07999 * 119.99944 * 344.49425 * 15 14 13 17 17 C 1.38811 * 119.99845 * 164.49348 * 15 14 13 18 18 N 1.31615 * 120.00474 * 350.61849 * 17 15 14 19 19 Si 1.86809 * 119.99691 * 170.61238 * 17 15 14 20 20 H 1.48493 * 109.47162 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46831 * 120.00266 * 19 17 15 22 22 H 1.48499 * 109.47005 * 239.99898 * 19 17 15 23 23 C 1.49976 * 104.93498 * 320.71205 * 14 13 11 24 24 C 1.54320 * 103.81786 * 38.69929 * 23 14 13 25 25 C 1.52996 * 112.07493 * 99.65971 * 24 23 14 26 26 C 1.47205 * 126.69882 * 180.02562 * 9 7 6 27 27 N 1.31804 * 106.96488 * 0.26420 * 6 5 4 28 28 N 1.28466 * 110.07658 * 359.97438 * 27 6 5 29 29 H 0.96992 * 124.88619 * 180.02562 * 28 27 6 30 30 H 1.08994 * 109.46923 * 59.99583 * 1 2 3 31 31 H 1.09002 * 109.47216 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46523 * 300.00178 * 1 2 3 33 33 H 1.08997 * 109.47179 * 240.00229 * 2 1 3 34 34 H 1.09003 * 109.47386 * 120.00037 * 2 1 3 35 35 H 1.09007 * 109.47485 * 60.00411 * 3 2 1 36 36 H 1.08994 * 109.47480 * 300.00075 * 3 2 1 37 37 H 1.08001 * 127.24425 * 0.02562 * 5 4 3 38 38 H 1.08997 * 110.07161 * 267.90282 * 10 9 7 39 39 H 1.09000 * 110.06892 * 29.43879 * 10 9 7 40 40 H 1.08998 * 109.47391 * 301.97547 * 12 11 10 41 41 H 1.09004 * 109.46829 * 61.97661 * 12 11 10 42 42 H 1.09002 * 109.46961 * 181.97314 * 12 11 10 43 43 H 1.09007 * 110.38614 * 255.11499 * 13 11 10 44 44 H 1.09004 * 110.38741 * 17.49518 * 13 11 10 45 45 H 0.96995 * 120.00500 * 180.02562 * 18 17 15 46 46 H 1.09003 * 110.28925 * 280.44259 * 23 14 13 47 47 H 1.09004 * 111.35528 * 157.47200 * 23 14 13 48 48 H 1.09005 * 109.46987 * 182.01139 * 25 24 23 49 49 H 1.09002 * 109.47566 * 302.01409 * 25 24 23 50 50 H 1.09002 * 109.47078 * 62.01494 * 25 24 23 51 51 H 1.08998 * 110.07039 * 330.57463 * 26 9 7 52 52 H 1.09003 * 110.06856 * 92.04714 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3496 1.3477 -1.0865 6 6 5.6718 1.3978 -0.5851 7 6 6.9160 1.3371 -1.3792 8 8 6.8603 1.2341 -2.5892 9 7 8.1127 1.3959 -0.7621 10 6 8.3512 1.5264 0.6846 11 6 9.6691 0.7817 0.9729 12 6 10.5235 1.5140 2.0096 13 6 9.3540 -0.6747 1.3742 14 7 10.3430 -1.4913 0.6336 15 6 11.0231 -2.5939 1.0774 16 1 11.0610 -2.8160 2.1337 17 6 11.6638 -3.4260 0.1697 18 7 11.4677 -3.2660 -1.1219 19 14 12.8046 -4.7729 0.7815 20 1 12.8538 -4.7438 2.2653 21 1 12.2983 -6.0936 0.3292 22 1 14.1681 -4.5523 0.2360 23 6 10.4508 -0.8403 -0.7132 24 6 10.3821 0.6691 -0.3996 25 6 11.7679 1.3172 -0.3856 26 6 9.4367 1.3490 -1.4040 27 7 5.5823 1.5097 0.7251 28 7 4.3485 1.5342 1.0823 29 1 4.0375 1.6116 1.9978 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6768 1.9564 0.8901 36 1 1.6768 1.9563 -0.8899 37 1 4.0448 1.2578 -2.1187 38 1 8.4459 2.5781 0.9547 39 1 7.5334 1.0688 1.2412 40 1 10.7388 2.5223 1.6561 41 1 9.9820 1.5679 2.9540 42 1 11.4584 0.9733 2.1571 43 1 9.4798 -0.8081 2.4488 44 1 8.3406 -0.9406 1.0736 45 1 11.9151 -3.8477 -1.7561 46 1 9.6124 -1.1357 -1.3440 47 1 11.3962 -1.0848 -1.1977 48 1 11.6733 2.3715 -0.1256 49 1 12.3960 0.8162 0.3511 50 1 12.2218 1.2256 -1.3724 51 1 9.3860 0.7662 -2.3237 52 1 9.7834 2.3595 -1.6204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982421741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:48 Heat of formation + Delta-G solvation = 63.464315 kcal Electronic energy + Delta-G solvation = -31808.208794 eV Core-core repulsion = 27809.832696 eV Total energy + Delta-G solvation = -3998.376099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.76428 -40.22240 -38.13323 -35.67229 -34.73282 -32.84296 -32.03297 -31.49603 -31.06973 -30.52142 -27.18624 -26.74409 -25.97584 -25.61958 -24.73964 -23.38379 -22.25666 -21.77282 -21.11806 -20.01689 -18.89886 -18.00144 -17.55696 -16.82034 -16.24931 -15.90825 -15.45918 -15.16232 -15.06313 -14.60795 -14.18993 -14.13050 -13.81501 -13.74546 -13.51755 -13.38139 -13.19592 -12.96714 -12.73884 -12.57383 -12.00444 -11.87556 -11.84701 -11.66464 -11.65597 -11.47844 -11.32545 -11.23887 -11.12833 -10.82649 -10.80822 -10.73192 -10.45330 -10.02897 -9.86586 -9.83718 -9.74578 -9.60672 -9.43413 -9.41323 -9.05594 -8.59475 -8.26538 -6.76278 -5.71651 -3.05219 1.61505 2.03493 2.71353 3.29519 3.40894 3.46820 3.49313 3.61899 4.27518 4.42042 4.51169 4.54611 4.66237 4.87935 4.98209 5.02304 5.06647 5.25669 5.31413 5.34579 5.40074 5.52291 5.56941 5.60152 5.65166 5.66004 5.68817 5.75020 5.86467 5.87723 5.92790 5.94972 6.01228 6.07939 6.17388 6.21228 6.27821 6.32664 6.41268 6.55379 6.55898 6.63624 6.73322 6.81447 6.91057 6.92732 7.05207 7.43308 7.62448 7.75551 7.78846 7.89482 8.25282 8.44616 9.15992 9.81127 10.59296 11.42470 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.002951 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.124796 B = 9484.882091 C =10402.674783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.048 4.048 4 C 0.013 3.987 5 C -0.175 4.175 6 C 0.002 3.998 7 C 0.616 3.384 8 O -0.538 6.538 9 N -0.596 5.596 10 C 0.111 3.889 11 C -0.083 4.083 12 C -0.120 4.120 13 C 0.145 3.855 14 N -0.596 5.596 15 C -0.223 4.223 16 H 0.074 0.926 17 C -0.006 4.006 18 N -0.913 5.913 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.175 3.825 24 C -0.093 4.093 25 C -0.118 4.118 26 C 0.119 3.881 27 N -0.252 5.252 28 N -0.383 5.383 29 H 0.442 0.558 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.020 0.980 45 H 0.252 0.748 46 H 0.023 0.977 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.065 0.935 50 H 0.051 0.949 51 H 0.082 0.918 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.828 13.909 5.210 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.087 4.087 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.159 4.159 7 C 0.403 3.597 8 O -0.414 6.414 9 N -0.327 5.327 10 C -0.012 4.012 11 C -0.086 4.086 12 C -0.177 4.177 13 C 0.019 3.981 14 N -0.320 5.320 15 C -0.351 4.351 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.560 5.560 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.217 1.217 23 C 0.050 3.950 24 C -0.096 4.096 25 C -0.176 4.176 26 C -0.003 4.003 27 N -0.088 5.088 28 N -0.097 5.097 29 H 0.286 0.714 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.178 0.822 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.041 0.959 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.070 0.930 51 H 0.100 0.900 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.129 13.698 5.349 21.826 hybrid contribution -0.109 -0.831 0.087 0.843 sum -16.238 12.867 5.436 21.419 Atomic orbital electron populations 1.21777 0.95272 1.02063 1.01876 1.21559 0.95933 0.95496 1.03114 1.20205 0.86351 0.98296 1.03888 1.21392 0.94927 1.07543 0.87369 1.21478 0.90381 1.08636 0.99798 1.21890 0.95010 1.09192 0.89787 1.16460 0.80578 0.76815 0.85881 1.90784 1.86254 1.51315 1.13062 1.48177 1.05076 1.70458 1.08999 1.22438 0.98503 0.99561 0.80721 1.22399 0.93440 0.97199 0.95538 1.21608 0.99987 0.99089 0.97056 1.21632 0.92582 0.88260 0.95671 1.45324 1.44968 1.30141 1.11520 1.19007 1.24847 0.99461 0.91781 0.90843 1.24862 1.01638 0.98388 0.95438 1.69916 1.45485 1.40504 1.00086 0.86114 0.80548 0.81671 0.77822 1.20504 1.21867 1.21712 1.21933 1.01374 0.83945 0.87760 1.22533 0.93935 0.99968 0.93113 1.21608 0.95440 0.98689 1.01857 1.22150 0.80919 0.99970 0.97310 1.73671 1.00914 1.19165 1.15041 1.43389 1.03138 1.53442 1.09720 0.71367 0.92434 0.92402 0.92747 0.91016 0.91884 0.90710 0.89088 0.82155 0.92277 0.88593 0.93048 0.93287 0.91497 0.93647 0.96253 0.93732 0.95855 0.89552 0.93560 0.91562 0.92977 0.89985 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 3 C -0.05 -0.30 5.77 -27.88 -0.16 -0.46 16 4 C 0.01 0.13 6.48 -82.21 -0.53 -0.40 16 5 C -0.17 -2.29 10.73 -39.37 -0.42 -2.71 16 6 C 0.00 0.03 6.98 -82.77 -0.58 -0.54 16 7 C 0.62 11.56 7.88 -12.39 -0.10 11.47 16 8 O -0.54 -11.49 17.16 5.30 0.09 -11.40 16 9 N -0.60 -10.67 3.32 -172.56 -0.57 -11.24 16 10 C 0.11 1.77 5.42 -3.09 -0.02 1.76 16 11 C -0.08 -1.45 1.08 -152.15 -0.16 -1.61 16 12 C -0.12 -1.76 7.52 37.16 0.28 -1.48 16 13 C 0.15 3.08 6.35 -2.47 -0.02 3.06 16 14 N -0.60 -15.22 3.41 -167.44 -0.57 -15.79 16 15 C -0.22 -6.19 10.35 -15.06 -0.16 -6.35 16 16 H 0.07 1.99 7.85 -52.49 -0.41 1.58 16 17 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 18 N -0.91 -27.14 10.87 55.49 0.60 -26.54 16 19 Si 0.91 22.17 29.56 -169.99 -5.03 17.14 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.18 4.25 5.02 -1.41 -0.01 4.25 16 24 C -0.09 -1.75 1.07 -152.31 -0.16 -1.91 16 25 C -0.12 -1.96 7.45 37.16 0.28 -1.68 16 26 C 0.12 2.14 5.94 -3.25 -0.02 2.12 16 27 N -0.25 -3.44 9.30 33.42 0.31 -3.13 16 28 N -0.38 -3.75 6.83 33.50 0.23 -3.52 16 29 H 0.44 2.65 8.96 -190.45 -1.71 0.94 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.16 1.97 8.06 -52.49 -0.42 1.54 16 38 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 39 H 0.10 1.54 5.26 -51.93 -0.27 1.27 16 40 H 0.05 0.66 7.10 -51.93 -0.37 0.29 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.08 7.15 -51.93 -0.37 0.71 16 43 H 0.05 0.92 7.93 -51.93 -0.41 0.51 16 44 H 0.02 0.45 7.55 -51.93 -0.39 0.05 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.02 0.63 7.52 -51.93 -0.39 0.24 16 47 H 0.09 2.32 6.37 -51.93 -0.33 1.99 16 48 H 0.05 0.64 7.08 -51.93 -0.37 0.28 16 49 H 0.07 1.18 7.17 -51.93 -0.37 0.81 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.08 1.62 7.35 -51.93 -0.38 1.24 16 52 H 0.06 0.96 7.89 -51.93 -0.41 0.55 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -34.13 403.74 -10.47 -44.60 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -9.96 Total: -0.08 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.66 Total: 3.87 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.00 Total: -60.23 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.13 -10.47 -44.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982421741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.068 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds