Wall clock time and date at job start Wed Apr 1 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 C 1.50702 * 109.47507 * 180.02562 * 3 2 1 5 5 C 1.35362 * 126.38768 * 84.99614 * 4 3 2 6 6 C 1.41498 * 105.50260 * 179.73939 * 5 4 3 7 7 C 1.47717 * 126.51795 * 180.29604 * 6 5 4 8 8 O 1.21573 * 119.99555 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99930 * 180.02562 * 7 6 5 10 10 C 1.47201 * 126.70313 * 359.68781 * 9 7 6 11 11 C 1.54091 * 106.23767 * 148.58235 * 10 9 7 12 12 C 1.53001 * 111.90783 * 141.22510 * 11 10 9 13 13 C 1.54315 * 109.27831 * 267.05964 * 11 10 9 14 14 N 1.48106 * 104.71534 * 136.30796 * 13 11 10 15 15 C 1.36936 * 127.84633 * 140.21643 * 14 13 11 16 16 H 1.07999 * 119.99944 * 344.49425 * 15 14 13 17 17 C 1.38811 * 119.99845 * 164.49348 * 15 14 13 18 18 N 1.31615 * 120.00474 * 350.61849 * 17 15 14 19 19 Si 1.86809 * 119.99691 * 170.61238 * 17 15 14 20 20 H 1.48493 * 109.47162 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46831 * 120.00266 * 19 17 15 22 22 H 1.48499 * 109.47005 * 239.99898 * 19 17 15 23 23 C 1.49976 * 104.93498 * 320.71205 * 14 13 11 24 24 C 1.54320 * 103.81786 * 38.69929 * 23 14 13 25 25 C 1.52996 * 112.07493 * 99.65971 * 24 23 14 26 26 C 1.47205 * 126.69882 * 180.02562 * 9 7 6 27 27 N 1.31804 * 106.96488 * 0.26420 * 6 5 4 28 28 N 1.28466 * 110.07658 * 359.97438 * 27 6 5 29 29 H 0.96992 * 124.88619 * 180.02562 * 28 27 6 30 30 H 1.08994 * 109.46923 * 59.99583 * 1 2 3 31 31 H 1.09002 * 109.47216 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46523 * 300.00178 * 1 2 3 33 33 H 1.08997 * 109.47179 * 240.00229 * 2 1 3 34 34 H 1.09003 * 109.47386 * 120.00037 * 2 1 3 35 35 H 1.09007 * 109.47485 * 60.00411 * 3 2 1 36 36 H 1.08994 * 109.47480 * 300.00075 * 3 2 1 37 37 H 1.08001 * 127.24425 * 0.02562 * 5 4 3 38 38 H 1.08997 * 110.07161 * 267.90282 * 10 9 7 39 39 H 1.09000 * 110.06892 * 29.43879 * 10 9 7 40 40 H 1.08998 * 109.47391 * 301.97547 * 12 11 10 41 41 H 1.09004 * 109.46829 * 61.97661 * 12 11 10 42 42 H 1.09002 * 109.46961 * 181.97314 * 12 11 10 43 43 H 1.09007 * 110.38614 * 255.11499 * 13 11 10 44 44 H 1.09004 * 110.38741 * 17.49518 * 13 11 10 45 45 H 0.96995 * 120.00500 * 180.02562 * 18 17 15 46 46 H 1.09003 * 110.28925 * 280.44259 * 23 14 13 47 47 H 1.09004 * 111.35528 * 157.47200 * 23 14 13 48 48 H 1.09005 * 109.46987 * 182.01139 * 25 24 23 49 49 H 1.09002 * 109.47566 * 302.01409 * 25 24 23 50 50 H 1.09002 * 109.47078 * 62.01494 * 25 24 23 51 51 H 1.08998 * 110.07039 * 330.57463 * 26 9 7 52 52 H 1.09003 * 110.06856 * 92.04714 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3496 1.3477 -1.0865 6 6 5.6718 1.3978 -0.5851 7 6 6.9160 1.3371 -1.3792 8 8 6.8603 1.2341 -2.5892 9 7 8.1127 1.3959 -0.7621 10 6 8.3512 1.5264 0.6846 11 6 9.6691 0.7817 0.9729 12 6 10.5235 1.5140 2.0096 13 6 9.3540 -0.6747 1.3742 14 7 10.3430 -1.4913 0.6336 15 6 11.0231 -2.5939 1.0774 16 1 11.0610 -2.8160 2.1337 17 6 11.6638 -3.4260 0.1697 18 7 11.4677 -3.2660 -1.1219 19 14 12.8046 -4.7729 0.7815 20 1 12.8538 -4.7438 2.2653 21 1 12.2983 -6.0936 0.3292 22 1 14.1681 -4.5523 0.2360 23 6 10.4508 -0.8403 -0.7132 24 6 10.3821 0.6691 -0.3996 25 6 11.7679 1.3172 -0.3856 26 6 9.4367 1.3490 -1.4040 27 7 5.5823 1.5097 0.7251 28 7 4.3485 1.5342 1.0823 29 1 4.0375 1.6116 1.9978 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6768 1.9564 0.8901 36 1 1.6768 1.9563 -0.8899 37 1 4.0448 1.2578 -2.1187 38 1 8.4459 2.5781 0.9547 39 1 7.5334 1.0688 1.2412 40 1 10.7388 2.5223 1.6561 41 1 9.9820 1.5679 2.9540 42 1 11.4584 0.9733 2.1571 43 1 9.4798 -0.8081 2.4488 44 1 8.3406 -0.9406 1.0736 45 1 11.9151 -3.8477 -1.7561 46 1 9.6124 -1.1357 -1.3440 47 1 11.3962 -1.0848 -1.1977 48 1 11.6733 2.3715 -0.1256 49 1 12.3960 0.8162 0.3511 50 1 12.2218 1.2256 -1.3724 51 1 9.3860 0.7662 -2.3237 52 1 9.7834 2.3595 -1.6204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982421741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:47 Heat of formation + Delta-G solvation = 41.603356 kcal Electronic energy + Delta-G solvation = -31809.156757 eV Core-core repulsion = 27809.832696 eV Total energy + Delta-G solvation = -3999.324061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.73508 -41.71749 -39.64507 -36.52027 -36.21360 -34.57244 -33.37386 -32.71924 -32.39117 -31.87008 -28.62010 -27.86951 -27.35269 -26.95246 -26.44848 -24.78768 -23.45659 -22.85977 -21.92984 -21.67683 -20.23025 -19.32390 -18.75098 -18.65661 -17.57325 -17.09569 -16.80352 -16.45876 -16.29987 -15.92767 -15.77226 -15.59916 -15.03694 -14.79761 -14.75771 -14.64451 -14.53028 -14.28034 -13.93530 -13.45116 -13.40124 -13.25062 -13.23416 -13.03487 -12.96051 -12.75502 -12.55418 -12.48703 -12.45790 -12.18943 -12.12480 -11.92516 -11.81010 -11.75875 -11.55062 -11.44750 -11.21589 -11.16625 -11.08620 -10.71181 -10.46816 -9.95676 -9.68457 -8.86966 -7.88455 -5.24804 0.47066 1.08278 1.44810 1.45514 1.56443 1.73991 2.14239 2.30175 2.48383 3.22273 3.30543 3.47372 3.51825 3.64979 3.83772 3.90653 3.96831 4.13533 4.17661 4.23611 4.30516 4.38827 4.45429 4.47085 4.51474 4.67651 4.68586 4.77338 4.79967 4.82980 4.84859 4.91904 4.94827 4.96485 4.98812 5.07310 5.13492 5.20310 5.25177 5.27772 5.27978 5.33806 5.37409 5.43046 5.44791 5.47688 5.51990 5.64426 5.77053 6.12184 6.17014 6.46727 6.78660 6.99811 7.06754 7.69404 8.49715 9.25205 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.002951 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.124796 B = 9484.882091 C =10402.674783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.044 4.044 4 C 0.041 3.959 5 C -0.201 4.201 6 C -0.031 4.031 7 C 0.606 3.394 8 O -0.580 6.580 9 N -0.601 5.601 10 C 0.118 3.882 11 C -0.072 4.072 12 C -0.114 4.114 13 C 0.143 3.857 14 N -0.617 5.617 15 C -0.231 4.231 16 H 0.081 0.919 17 C -0.065 4.065 18 N -0.950 5.950 19 Si 0.977 3.023 20 H -0.262 1.262 21 H -0.297 1.297 22 H -0.290 1.290 23 C 0.185 3.815 24 C -0.084 4.084 25 C -0.111 4.111 26 C 0.121 3.879 27 N -0.258 5.258 28 N -0.362 5.362 29 H 0.462 0.538 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.057 0.943 44 H -0.002 1.002 45 H 0.247 0.753 46 H -0.024 1.024 47 H 0.053 0.947 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.049 0.951 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.065 16.366 8.329 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.082 4.082 4 C -0.086 4.086 5 C -0.229 4.229 6 C -0.190 4.190 7 C 0.395 3.605 8 O -0.459 6.459 9 N -0.332 5.332 10 C -0.004 4.004 11 C -0.074 4.074 12 C -0.171 4.171 13 C 0.017 3.983 14 N -0.341 5.341 15 C -0.360 4.360 16 H 0.098 0.902 17 C -0.259 4.259 18 N -0.598 5.598 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.224 1.224 22 H -0.217 1.217 23 C 0.060 3.940 24 C -0.086 4.086 25 C -0.168 4.168 26 C -0.002 4.002 27 N -0.096 5.096 28 N -0.079 5.079 29 H 0.310 0.690 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.016 0.984 45 H 0.056 0.944 46 H -0.006 1.006 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.375 16.182 8.540 25.233 hybrid contribution 0.131 -1.660 -0.848 1.868 sum -17.244 14.522 7.692 23.821 Atomic orbital electron populations 1.21752 0.93973 1.02153 1.02809 1.21534 0.97023 0.95456 1.02082 1.20371 0.83328 0.98472 1.06068 1.21782 0.96356 1.04422 0.86005 1.21642 0.90053 1.10257 1.00944 1.21595 0.94512 1.12195 0.90722 1.16985 0.81670 0.76028 0.85839 1.90737 1.86998 1.53278 1.14904 1.48310 1.04800 1.70106 1.09939 1.22508 0.97395 1.01135 0.79408 1.22353 0.94648 0.95110 0.95312 1.21590 0.98710 0.99747 0.97033 1.21783 0.90463 0.90216 0.95798 1.45629 1.45885 1.30340 1.12214 1.19404 1.24450 1.00012 0.92173 0.90176 1.25721 1.03553 1.01044 0.95562 1.70140 1.46766 1.41587 1.01313 0.85034 0.78087 0.78208 0.78130 1.18635 1.22439 1.21702 1.21647 0.97524 0.88069 0.86805 1.22385 0.96031 0.95834 0.94378 1.21561 0.93190 1.00546 1.01538 1.22097 0.81321 1.00950 0.95838 1.73538 1.02718 1.19437 1.13878 1.43481 1.02147 1.51336 1.10889 0.68985 0.91940 0.92815 0.91362 0.92893 0.92221 0.87552 0.87892 0.82426 0.88948 0.88563 0.90109 0.91032 0.93060 0.92466 0.98409 0.94424 1.00625 0.92857 0.89529 0.92926 0.93177 0.93203 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 3 C -0.04 -0.40 5.77 29.85 0.17 -0.23 16 4 C 0.04 0.72 6.48 41.40 0.27 0.98 16 5 C -0.20 -5.24 10.73 22.41 0.24 -5.00 16 6 C -0.03 -0.99 6.98 42.46 0.30 -0.70 16 7 C 0.61 23.63 7.88 86.75 0.68 24.31 16 8 O -0.58 -26.36 17.16 -3.95 -0.07 -26.43 16 9 N -0.60 -21.69 3.32 -818.13 -2.71 -24.41 16 10 C 0.12 3.54 5.42 86.61 0.47 4.01 16 11 C -0.07 -2.40 1.08 -50.66 -0.05 -2.45 16 12 C -0.11 -2.91 7.52 71.98 0.54 -2.37 16 13 C 0.14 6.10 6.35 86.52 0.55 6.65 16 14 N -0.62 -32.61 3.41 -683.65 -2.33 -34.94 16 15 C -0.23 -13.18 10.35 84.03 0.87 -12.31 16 16 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 17 C -0.07 -3.82 5.40 84.86 0.46 -3.36 16 18 N -0.95 -59.43 10.87 21.65 0.24 -59.20 16 19 Si 0.98 46.65 29.56 68.60 2.03 48.68 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 C 0.18 9.55 5.02 86.15 0.43 9.98 16 24 C -0.08 -3.17 1.07 -50.76 -0.05 -3.22 16 25 C -0.11 -3.51 7.45 71.98 0.54 -2.98 16 26 C 0.12 4.41 5.94 86.51 0.51 4.92 16 27 N -0.26 -6.68 9.30 -48.18 -0.45 -7.13 16 28 N -0.36 -6.18 6.83 -47.93 -0.33 -6.51 16 29 H 0.46 3.88 8.96 -220.00 -1.97 1.91 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.16 4.05 8.06 -2.91 -0.02 4.02 16 38 H 0.09 2.23 7.89 -2.39 -0.02 2.22 16 39 H 0.10 2.93 5.26 -2.39 -0.01 2.92 16 40 H 0.08 1.64 7.10 -2.39 -0.02 1.63 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.05 1.51 7.15 -2.39 -0.02 1.49 16 43 H 0.06 2.27 7.93 -2.38 -0.02 2.26 16 44 H 0.00 -0.09 7.55 -2.39 -0.02 -0.11 16 45 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 46 H -0.02 -1.45 7.52 -2.39 -0.02 -1.47 16 47 H 0.05 3.07 6.37 -2.39 -0.02 3.05 16 48 H 0.09 2.06 7.08 -2.38 -0.02 2.05 16 49 H 0.05 1.82 7.17 -2.39 -0.02 1.80 16 50 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.05 2.13 7.35 -2.39 -0.02 2.11 16 52 H 0.09 2.79 7.89 -2.39 -0.02 2.77 16 Total: -1.00 -80.94 403.74 2.14 -78.80 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -1.05 Total: 14.54 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.82 Total: 16.60 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -5.58 Total: -132.19 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.07 Total: -26.43 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -80.94 2.14 -78.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982421741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.402 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds