Wall clock time and date at job start Wed Apr 1 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52999 * 109.46683 * 119.99164 * 2 1 3 5 5 C 1.50695 * 109.47185 * 65.00633 * 4 2 1 6 6 N 1.30857 * 125.41980 * 304.97123 * 5 4 2 7 7 C 1.33322 * 109.68630 * 179.78120 * 6 5 4 8 8 C 1.36660 * 107.78471 * 0.38095 * 7 6 5 9 9 C 1.46764 * 126.84281 * 179.89257 * 8 7 6 10 10 O 1.21683 * 119.99830 * 359.68505 * 9 8 7 11 11 N 1.34775 * 120.00150 * 179.69011 * 9 8 7 12 12 C 1.46504 * 120.00010 * 180.02562 * 11 9 8 13 13 C 1.55231 * 113.16839 * 299.95175 * 12 11 9 14 14 C 1.54222 * 106.82272 * 239.90153 * 13 12 11 15 15 C 1.54757 * 104.15415 * 334.35955 * 14 13 12 16 16 C 1.54774 * 103.21858 * 37.80879 * 15 14 13 17 17 H 1.08991 * 111.86623 * 85.85322 * 16 15 14 18 18 N 1.46975 * 108.68960 * 209.80720 * 16 15 14 19 19 C 1.36932 * 125.58284 * 295.09758 * 18 16 15 20 20 H 1.08010 * 119.99584 * 13.88525 * 19 18 16 21 21 C 1.38813 * 120.00494 * 193.89130 * 19 18 16 22 22 N 1.31616 * 119.99809 * 27.02824 * 21 19 18 23 23 Si 1.86801 * 120.00088 * 207.02883 * 21 19 18 24 24 H 1.48503 * 109.47189 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47234 * 119.99773 * 23 21 19 26 26 H 1.48496 * 109.47307 * 240.00259 * 23 21 19 27 27 C 1.47377 * 108.84336 * 115.36259 * 18 16 15 28 28 C 1.54915 * 112.77666 * 64.05952 * 12 11 9 29 29 N 1.34501 * 125.41917 * 124.99433 * 5 4 2 30 30 H 0.96997 * 126.47415 * 359.96385 * 29 5 4 31 31 H 1.08994 * 109.47886 * 300.00405 * 1 2 3 32 32 H 1.09004 * 109.47257 * 60.00723 * 1 2 3 33 33 H 1.09009 * 109.47103 * 180.02562 * 1 2 3 34 34 H 1.08989 * 109.47438 * 239.99569 * 2 1 3 35 35 H 1.08994 * 109.47149 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46616 * 299.99670 * 3 2 1 37 37 H 1.08994 * 109.47223 * 59.99189 * 3 2 1 38 38 H 1.09004 * 109.47505 * 305.00329 * 4 2 1 39 39 H 1.09006 * 109.46885 * 185.00425 * 4 2 1 40 40 H 1.08003 * 126.10216 * 180.27283 * 7 6 5 41 41 H 0.96996 * 119.99642 * 359.97438 * 11 9 8 42 42 H 1.09000 * 110.52505 * 120.23285 * 13 12 11 43 43 H 1.09002 * 109.40694 * 358.95581 * 13 12 11 44 44 H 1.08997 * 110.49656 * 215.68803 * 14 13 12 45 45 H 1.09001 * 110.60518 * 93.07684 * 14 13 12 46 46 H 1.08999 * 110.66825 * 279.37385 * 15 14 13 47 47 H 1.09004 * 110.66897 * 156.24110 * 15 14 13 48 48 H 0.96999 * 120.00428 * 5.85540 * 22 21 19 49 49 H 1.08996 * 110.36928 * 93.87176 * 27 18 16 50 50 H 1.09000 * 110.37149 * 216.20226 * 27 18 16 51 51 H 1.09005 * 110.96234 * 204.56648 * 28 12 11 52 52 H 1.08995 * 110.97361 * 328.29620 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6413 -2.1731 1.1891 6 7 0.4208 -2.6187 1.0340 7 6 0.4277 -3.9519 1.0203 8 6 1.7204 -4.3642 1.1836 9 6 2.2025 -5.7495 1.2333 10 8 1.4156 -6.6717 1.1289 11 7 3.5169 -6.0002 1.3946 12 6 3.9983 -7.3830 1.4436 13 6 3.3793 -8.2043 2.6064 14 6 4.5498 -8.6725 3.4947 15 6 5.7635 -8.7053 2.5351 16 6 5.5356 -7.4678 1.6339 17 1 5.9410 -6.5601 2.0806 18 7 6.1201 -7.7340 0.3118 19 6 7.4518 -7.9184 0.0519 20 1 8.1409 -8.0970 0.8642 21 6 7.9163 -7.8756 -1.2555 22 7 7.2717 -7.1695 -2.1601 23 14 9.4561 -8.8203 -1.7311 24 1 9.9892 -9.5297 -0.5403 25 1 9.1236 -9.8090 -2.7879 26 1 10.4793 -7.8736 -2.2430 27 6 5.0390 -7.7636 -0.6893 28 6 3.7686 -8.1455 0.1148 29 7 2.4835 -3.2173 1.2868 30 1 3.4450 -3.1734 1.4067 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8898 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6765 1.9564 0.8899 38 1 1.6052 -0.2615 2.1371 39 1 3.1263 -0.6441 1.2954 40 1 -0.4345 -4.5916 0.9029 41 1 4.1442 -5.2651 1.4775 42 1 2.8370 -9.0668 2.2188 43 1 2.7061 -7.5681 3.1810 44 1 4.3519 -9.6673 3.8939 45 1 4.7233 -7.9646 4.3052 46 1 5.7601 -9.6195 1.9416 47 1 6.6963 -8.6098 3.0911 48 1 6.5230 -6.6118 -1.8970 49 1 4.9200 -6.7822 -1.1483 50 1 5.2466 -8.5164 -1.4498 51 1 3.7191 -9.2209 0.2858 52 1 2.8690 -7.7906 -0.3881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990688219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:40 Heat of formation + Delta-G solvation = 30.709148 kcal Electronic energy + Delta-G solvation = -31466.918052 eV Core-core repulsion = 27467.121583 eV Total energy + Delta-G solvation = -3999.796469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 10.42 seconds Orbital eigenvalues (eV) -42.42578 -40.17591 -38.14199 -36.58500 -34.61104 -33.85450 -32.73079 -31.61356 -30.78515 -29.78158 -27.33733 -27.26712 -26.60139 -26.12202 -23.89313 -23.17671 -21.44095 -21.04192 -20.44933 -20.19599 -19.74002 -19.00706 -18.39662 -17.56169 -16.36534 -15.93204 -15.78448 -15.40107 -15.06228 -14.58047 -14.39809 -14.25631 -13.97351 -13.77135 -13.67717 -13.56360 -13.46051 -13.08441 -12.80622 -12.66423 -12.50470 -12.16825 -11.98227 -11.81582 -11.63156 -11.47361 -11.12227 -11.03356 -10.97019 -10.73499 -10.66490 -10.48688 -10.36741 -10.35408 -10.27486 -10.12356 -10.07775 -10.00259 -9.72976 -9.55315 -8.90853 -8.56755 -8.46196 -7.03223 -6.14269 -3.18576 1.20733 2.63475 2.68915 3.15437 3.35983 3.47651 3.51330 3.63581 4.05025 4.46825 4.51072 4.58163 4.60805 4.74729 4.89767 4.97503 5.11296 5.13363 5.14812 5.27520 5.29152 5.37349 5.43715 5.50249 5.51311 5.59530 5.62490 5.66581 5.71574 5.76443 5.79372 5.91676 5.92208 5.95372 6.05462 6.10144 6.11078 6.25000 6.28646 6.30256 6.37802 6.51504 6.54432 6.61606 6.77344 6.88621 6.99020 7.02284 7.03391 7.50782 7.72838 7.77432 8.21856 8.42556 8.95489 9.76218 10.29594 11.18498 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.002933 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.821070 B = 9544.142728 C =11150.852055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.035 4.035 5 C 0.240 3.760 6 N -0.488 5.488 7 C 0.066 3.934 8 C -0.084 4.084 9 C 0.594 3.406 10 O -0.522 6.522 11 N -0.703 5.703 12 C 0.161 3.839 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.162 3.838 17 H 0.043 0.957 18 N -0.596 5.596 19 C -0.333 4.333 20 H 0.067 0.933 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.068 2.932 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.295 1.295 27 C 0.145 3.855 28 C -0.133 4.133 29 N -0.550 5.550 30 H 0.421 0.579 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.183 0.817 41 H 0.393 0.607 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.269 0.731 49 H 0.022 0.978 50 H 0.055 0.945 51 H 0.075 0.925 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 11.661 9.444 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.074 4.074 5 C -0.024 4.024 6 N -0.207 5.207 7 C -0.088 4.088 8 C -0.200 4.200 9 C 0.380 3.620 10 O -0.397 6.397 11 N -0.352 5.352 12 C 0.075 3.925 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.165 4.165 16 C 0.054 3.946 17 H 0.061 0.939 18 N -0.321 5.321 19 C -0.461 4.461 20 H 0.085 0.915 21 C -0.227 4.227 22 N -0.562 5.562 23 Si 0.898 3.102 24 H -0.219 1.219 25 H -0.217 1.217 26 H -0.223 1.223 27 C 0.020 3.980 28 C -0.172 4.172 29 N -0.155 5.155 30 H 0.260 0.740 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.200 0.800 41 H 0.227 0.773 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.039 0.961 50 H 0.073 0.927 51 H 0.094 0.906 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.629 10.983 7.982 17.243 hybrid contribution 0.687 0.392 1.447 1.649 sum -9.942 11.375 9.428 17.808 Atomic orbital electron populations 1.22079 0.93912 1.04851 1.00732 1.20998 0.97466 0.95529 0.96612 1.21855 1.00859 0.95652 1.02147 1.20259 1.01198 0.85256 1.00708 1.23376 0.85712 0.91553 1.01722 1.70107 1.19606 1.10072 1.20962 1.22663 0.95070 0.91061 0.99985 1.21290 0.93410 0.86813 1.18475 1.16830 0.82433 0.85948 0.76796 1.90838 1.55065 1.43752 1.50079 1.45768 1.07059 1.08708 1.73700 1.21897 0.94342 0.80043 0.96234 1.22523 0.97249 0.99368 0.95651 1.22360 0.95707 1.00516 0.97708 1.22863 0.96474 1.00172 0.97030 1.21782 0.88386 0.95590 0.88862 0.93934 1.44613 1.02762 1.83681 1.01070 1.19767 0.82547 1.48577 0.95190 0.91527 1.25701 1.04259 1.00106 0.92621 1.70735 1.22988 1.25309 1.37164 0.83489 0.75125 0.76281 0.75293 1.21859 1.21676 1.22267 1.21621 0.85811 0.98317 0.92250 1.23197 0.99200 0.99551 0.95301 1.43304 1.10948 1.06179 1.55061 0.74009 0.93117 0.93526 0.88977 0.91112 0.92697 0.92291 0.92487 0.88758 0.90109 0.79987 0.77294 0.90858 0.92212 0.91969 0.92324 0.90681 0.92198 0.91954 0.96070 0.92689 0.90639 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.92 37.16 0.33 -1.06 16 2 C -0.09 -0.68 2.91 -90.62 -0.26 -0.94 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 4 C -0.04 -0.26 5.32 -27.89 -0.15 -0.41 16 5 C 0.24 2.52 7.36 -155.61 -1.15 1.37 16 6 N -0.49 -6.06 8.51 -10.58 -0.09 -6.15 16 7 C 0.07 0.87 11.66 -17.48 -0.20 0.66 16 8 C -0.08 -1.11 7.08 -82.15 -0.58 -1.69 16 9 C 0.59 9.16 7.00 -12.82 -0.09 9.07 16 10 O -0.52 -9.40 14.85 5.20 0.08 -9.32 16 11 N -0.70 -10.56 5.27 -45.81 -0.24 -10.80 16 12 C 0.16 2.74 0.77 -128.49 -0.10 2.64 16 13 C -0.11 -1.68 5.34 -24.91 -0.13 -1.81 16 14 C -0.12 -1.78 6.84 -25.17 -0.17 -1.95 16 15 C -0.13 -2.18 6.22 -24.87 -0.15 -2.33 16 16 C 0.16 3.11 3.61 -65.60 -0.24 2.87 16 17 H 0.04 0.82 7.97 -51.93 -0.41 0.41 16 18 N -0.60 -14.15 2.97 -160.97 -0.48 -14.63 16 19 C -0.33 -8.93 9.76 -15.06 -0.15 -9.08 16 20 H 0.07 1.79 7.96 -52.48 -0.42 1.37 16 21 C -0.03 -0.71 5.09 -17.43 -0.09 -0.80 16 22 N -0.92 -27.17 12.81 55.49 0.71 -26.46 16 23 Si 1.07 24.99 30.00 -169.99 -5.10 19.89 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.15 3.35 5.21 -2.44 -0.01 3.34 16 28 C -0.13 -2.56 5.83 -24.60 -0.14 -2.70 16 29 N -0.55 -5.75 6.07 -7.02 -0.04 -5.79 16 30 H 0.42 3.38 8.32 -40.82 -0.34 3.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 1.00 5.49 -51.92 -0.28 0.71 16 34 H 0.07 0.64 8.14 -51.94 -0.42 0.22 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16 41 H 0.39 5.21 7.73 -40.82 -0.32 4.90 16 42 H 0.07 1.15 7.40 -51.93 -0.38 0.77 16 43 H 0.06 0.92 7.48 -51.93 -0.39 0.53 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.27 7.92 5.83 -40.82 -0.24 7.68 16 49 H 0.02 0.53 6.86 -51.93 -0.36 0.17 16 50 H 0.05 1.41 7.70 -51.93 -0.40 1.01 16 51 H 0.08 1.42 7.60 -51.93 -0.39 1.02 16 52 H 0.07 1.39 6.84 -51.93 -0.36 1.04 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -32.03 402.76 -10.62 -42.64 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.58 Total: 7.95 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.95 Total: -3.41 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.14 Total: -63.82 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.10 Total: 19.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.03 -10.62 -42.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990688219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.352 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.42 seconds