Wall clock time and date at job start Wed Apr 1 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52999 * 109.46683 * 119.99164 * 2 1 3 5 5 C 1.50695 * 109.47185 * 65.00633 * 4 2 1 6 6 N 1.30857 * 125.41980 * 304.97123 * 5 4 2 7 7 C 1.33322 * 109.68630 * 179.78120 * 6 5 4 8 8 C 1.36660 * 107.78471 * 0.38095 * 7 6 5 9 9 C 1.46764 * 126.84281 * 179.89257 * 8 7 6 10 10 O 1.21683 * 119.99830 * 359.68505 * 9 8 7 11 11 N 1.34775 * 120.00150 * 179.69011 * 9 8 7 12 12 C 1.46504 * 120.00010 * 180.02562 * 11 9 8 13 13 C 1.55231 * 113.16839 * 299.95175 * 12 11 9 14 14 C 1.54222 * 106.82272 * 239.90153 * 13 12 11 15 15 C 1.54757 * 104.15415 * 334.35955 * 14 13 12 16 16 C 1.54774 * 103.21858 * 37.80879 * 15 14 13 17 17 H 1.08991 * 111.86623 * 85.85322 * 16 15 14 18 18 N 1.46975 * 108.68960 * 209.80720 * 16 15 14 19 19 C 1.36932 * 125.58284 * 295.09758 * 18 16 15 20 20 H 1.08010 * 119.99584 * 13.88525 * 19 18 16 21 21 C 1.38813 * 120.00494 * 193.89130 * 19 18 16 22 22 N 1.31616 * 119.99809 * 27.02824 * 21 19 18 23 23 Si 1.86801 * 120.00088 * 207.02883 * 21 19 18 24 24 H 1.48503 * 109.47189 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47234 * 119.99773 * 23 21 19 26 26 H 1.48496 * 109.47307 * 240.00259 * 23 21 19 27 27 C 1.47377 * 108.84336 * 115.36259 * 18 16 15 28 28 C 1.54915 * 112.77666 * 64.05952 * 12 11 9 29 29 N 1.34501 * 125.41917 * 124.99433 * 5 4 2 30 30 H 0.96997 * 126.47415 * 359.96385 * 29 5 4 31 31 H 1.08994 * 109.47886 * 300.00405 * 1 2 3 32 32 H 1.09004 * 109.47257 * 60.00723 * 1 2 3 33 33 H 1.09009 * 109.47103 * 180.02562 * 1 2 3 34 34 H 1.08989 * 109.47438 * 239.99569 * 2 1 3 35 35 H 1.08994 * 109.47149 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46616 * 299.99670 * 3 2 1 37 37 H 1.08994 * 109.47223 * 59.99189 * 3 2 1 38 38 H 1.09004 * 109.47505 * 305.00329 * 4 2 1 39 39 H 1.09006 * 109.46885 * 185.00425 * 4 2 1 40 40 H 1.08003 * 126.10216 * 180.27283 * 7 6 5 41 41 H 0.96996 * 119.99642 * 359.97438 * 11 9 8 42 42 H 1.09000 * 110.52505 * 120.23285 * 13 12 11 43 43 H 1.09002 * 109.40694 * 358.95581 * 13 12 11 44 44 H 1.08997 * 110.49656 * 215.68803 * 14 13 12 45 45 H 1.09001 * 110.60518 * 93.07684 * 14 13 12 46 46 H 1.08999 * 110.66825 * 279.37385 * 15 14 13 47 47 H 1.09004 * 110.66897 * 156.24110 * 15 14 13 48 48 H 0.96999 * 120.00428 * 5.85540 * 22 21 19 49 49 H 1.08996 * 110.36928 * 93.87176 * 27 18 16 50 50 H 1.09000 * 110.37149 * 216.20226 * 27 18 16 51 51 H 1.09005 * 110.96234 * 204.56648 * 28 12 11 52 52 H 1.08995 * 110.97361 * 328.29620 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6413 -2.1731 1.1891 6 7 0.4208 -2.6187 1.0340 7 6 0.4277 -3.9519 1.0203 8 6 1.7204 -4.3642 1.1836 9 6 2.2025 -5.7495 1.2333 10 8 1.4156 -6.6717 1.1289 11 7 3.5169 -6.0002 1.3946 12 6 3.9983 -7.3830 1.4436 13 6 3.3793 -8.2043 2.6064 14 6 4.5498 -8.6725 3.4947 15 6 5.7635 -8.7053 2.5351 16 6 5.5356 -7.4678 1.6339 17 1 5.9410 -6.5601 2.0806 18 7 6.1201 -7.7340 0.3118 19 6 7.4518 -7.9184 0.0519 20 1 8.1409 -8.0970 0.8642 21 6 7.9163 -7.8756 -1.2555 22 7 7.2717 -7.1695 -2.1601 23 14 9.4561 -8.8203 -1.7311 24 1 9.9892 -9.5297 -0.5403 25 1 9.1236 -9.8090 -2.7879 26 1 10.4793 -7.8736 -2.2430 27 6 5.0390 -7.7636 -0.6893 28 6 3.7686 -8.1455 0.1148 29 7 2.4835 -3.2173 1.2868 30 1 3.4450 -3.1734 1.4067 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8898 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6765 1.9564 0.8899 38 1 1.6052 -0.2615 2.1371 39 1 3.1263 -0.6441 1.2954 40 1 -0.4345 -4.5916 0.9029 41 1 4.1442 -5.2651 1.4775 42 1 2.8370 -9.0668 2.2188 43 1 2.7061 -7.5681 3.1810 44 1 4.3519 -9.6673 3.8939 45 1 4.7233 -7.9646 4.3052 46 1 5.7601 -9.6195 1.9416 47 1 6.6963 -8.6098 3.0911 48 1 6.5230 -6.6118 -1.8970 49 1 4.9200 -6.7822 -1.1483 50 1 5.2466 -8.5164 -1.4498 51 1 3.7191 -9.2209 0.2858 52 1 2.8690 -7.7906 -0.3881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990688219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:27 Heat of formation + Delta-G solvation = 11.964755 kcal Electronic energy + Delta-G solvation = -31467.730870 eV Core-core repulsion = 27467.121583 eV Total energy + Delta-G solvation = -4000.609287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.53 seconds Orbital eigenvalues (eV) -43.36512 -41.57881 -39.53036 -37.23835 -36.35827 -35.09968 -33.79837 -33.34767 -31.91259 -31.21497 -28.34041 -28.23566 -27.90744 -27.36885 -25.77491 -24.29717 -22.56581 -22.09638 -21.73629 -21.49864 -20.75320 -20.36214 -19.65126 -19.35376 -17.65102 -17.04408 -16.87845 -16.61993 -16.16163 -15.88468 -15.63675 -15.50656 -15.27920 -15.13855 -15.07894 -14.75753 -14.66327 -14.27397 -14.25671 -13.60028 -13.45981 -13.30339 -13.21143 -13.04317 -12.73792 -12.70125 -12.48532 -12.24322 -12.20645 -12.01106 -11.96294 -11.87315 -11.73731 -11.71562 -11.58607 -11.56290 -11.37190 -11.31930 -11.18547 -10.83553 -10.52632 -10.22484 -9.56648 -9.03397 -8.30404 -5.30649 0.18475 1.57251 1.64961 1.68610 1.75752 1.80106 1.97126 2.22781 2.62572 3.15298 3.22426 3.27546 3.45760 3.70272 3.75039 3.80563 3.87641 3.97964 4.08465 4.19347 4.23229 4.30675 4.33992 4.35597 4.41049 4.49200 4.62461 4.67368 4.70605 4.73905 4.77176 4.79718 4.88296 4.91907 4.92489 5.00789 5.03851 5.12663 5.12840 5.18219 5.20970 5.25581 5.33209 5.40941 5.47873 5.50040 5.51398 5.70091 5.74090 6.17553 6.30431 6.34824 6.83173 6.88182 6.99934 7.70582 8.28414 9.02532 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.002933 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.821070 B = 9544.142728 C =11150.852055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.035 4.035 5 C 0.252 3.748 6 N -0.505 5.505 7 C 0.060 3.940 8 C -0.101 4.101 9 C 0.598 3.402 10 O -0.551 6.551 11 N -0.699 5.699 12 C 0.171 3.829 13 C -0.103 4.103 14 C -0.109 4.109 15 C -0.121 4.121 16 C 0.154 3.846 17 H 0.048 0.952 18 N -0.611 5.611 19 C -0.329 4.329 20 H 0.067 0.933 21 C -0.082 4.082 22 N -0.953 5.953 23 Si 1.116 2.884 24 H -0.270 1.270 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.156 3.844 28 C -0.121 4.121 29 N -0.542 5.542 30 H 0.433 0.567 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.185 0.815 41 H 0.402 0.598 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.255 0.745 49 H -0.001 1.001 50 H 0.017 0.983 51 H 0.079 0.921 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 12.603 11.794 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.074 4.074 5 C -0.012 4.012 6 N -0.225 5.225 7 C -0.094 4.094 8 C -0.217 4.217 9 C 0.385 3.615 10 O -0.429 6.429 11 N -0.349 5.349 12 C 0.084 3.916 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.066 0.934 18 N -0.337 5.337 19 C -0.458 4.458 20 H 0.085 0.915 21 C -0.277 4.277 22 N -0.597 5.597 23 Si 0.941 3.059 24 H -0.195 1.195 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.031 3.969 28 C -0.161 4.161 29 N -0.147 5.147 30 H 0.274 0.726 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.202 0.798 41 H 0.238 0.762 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.017 0.983 50 H 0.036 0.964 51 H 0.098 0.902 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.255 11.940 10.384 18.857 hybrid contribution 0.520 0.189 0.718 0.906 sum -9.736 12.129 11.103 19.109 Atomic orbital electron populations 1.22040 0.94744 1.03498 1.01151 1.20969 0.96723 0.96595 0.96180 1.21814 1.01320 0.94310 1.02625 1.20471 1.02881 0.82966 1.01037 1.24029 0.85162 0.92696 0.99328 1.70178 1.20805 1.09574 1.21927 1.22855 0.95297 0.91677 0.99572 1.20929 0.93791 0.86514 1.20436 1.17005 0.82013 0.86552 0.75904 1.90816 1.55700 1.44890 1.51470 1.45666 1.07321 1.08217 1.73693 1.21740 0.93159 0.81113 0.95603 1.22476 0.97723 0.99003 0.94961 1.22299 0.93006 1.02362 0.97065 1.22735 0.98363 0.97924 0.97072 1.22037 0.89515 0.96721 0.86991 0.93390 1.44776 1.02132 1.83810 1.02959 1.20005 0.83920 1.46742 0.95097 0.91503 1.26974 1.06791 1.00767 0.93171 1.70846 1.23859 1.27189 1.37814 0.82842 0.72271 0.75120 0.75634 1.19511 1.22107 1.21980 1.21376 0.87640 0.95987 0.91933 1.23065 0.96773 1.00193 0.96038 1.43245 1.11520 1.05316 1.54627 0.72632 0.92404 0.93445 0.91122 0.92650 0.91918 0.92434 0.91443 0.87180 0.87677 0.79797 0.76235 0.91063 0.91568 0.89847 0.90270 0.92676 0.91810 0.93399 0.98287 0.96418 0.90198 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.92 71.98 0.64 -1.95 16 2 C -0.09 -1.19 2.91 -10.79 -0.03 -1.22 16 3 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 4 C -0.03 -0.43 5.32 29.85 0.16 -0.27 16 5 C 0.25 4.89 7.36 138.19 1.02 5.90 16 6 N -0.50 -12.17 8.51 -187.39 -1.59 -13.77 16 7 C 0.06 1.57 11.66 84.10 0.98 2.55 16 8 C -0.10 -2.61 7.08 40.01 0.28 -2.32 16 9 C 0.60 18.13 7.00 86.47 0.61 18.74 16 10 O -0.55 -19.74 14.85 -4.29 -0.06 -19.80 16 11 N -0.70 -20.44 5.27 -417.06 -2.20 -22.64 16 12 C 0.17 5.66 0.77 5.76 0.00 5.67 16 13 C -0.10 -2.94 5.34 31.77 0.17 -2.77 16 14 C -0.11 -2.75 6.84 31.61 0.22 -2.54 16 15 C -0.12 -3.99 6.22 31.80 0.20 -3.79 16 16 C 0.15 5.77 3.61 46.24 0.17 5.94 16 17 H 0.05 1.78 7.97 -2.39 -0.02 1.76 16 18 N -0.61 -29.43 2.97 -663.18 -1.97 -31.39 16 19 C -0.33 -17.78 9.76 84.03 0.82 -16.96 16 20 H 0.07 3.55 7.96 -2.91 -0.02 3.53 16 21 C -0.08 -4.60 5.09 84.86 0.43 -4.17 16 22 N -0.95 -58.07 12.81 21.65 0.28 -57.79 16 23 Si 1.12 50.83 30.00 68.60 2.06 52.89 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 27 C 0.16 7.50 5.21 86.94 0.45 7.95 16 28 C -0.12 -4.73 5.83 31.98 0.19 -4.54 16 29 N -0.54 -10.56 6.07 -176.12 -1.07 -11.63 16 30 H 0.43 6.18 8.32 -92.71 -0.77 5.41 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 1.50 5.49 -2.38 -0.01 1.49 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.18 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.40 10.24 7.73 -92.71 -0.72 9.53 16 42 H 0.07 2.09 7.40 -2.39 -0.02 2.08 16 43 H 0.07 1.85 7.48 -2.39 -0.02 1.83 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 47 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.26 15.74 5.83 -92.71 -0.54 15.20 16 49 H 0.00 -0.03 6.86 -2.39 -0.02 -0.05 16 50 H 0.02 0.95 7.70 -2.39 -0.02 0.93 16 51 H 0.08 3.02 7.60 -2.38 -0.02 3.00 16 52 H 0.07 2.70 6.84 -2.39 -0.02 2.68 16 Total: -1.00 -70.97 402.76 2.08 -68.89 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.32 Total: 29.83 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.96 Total: 5.42 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -6.55 Total: -137.23 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.06 Total: -19.80 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.06 Total: 52.89 kcal Total: -70.97 2.08 -68.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990688219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.852 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.54 seconds