Wall clock time and date at job start Wed Apr 1 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47530 * 2 1 4 4 C 1.50706 * 109.47101 * 120.00346 * 2 1 3 5 5 N 1.30497 * 125.64671 * 299.95596 * 4 2 1 6 6 C 1.34127 * 109.25542 * 180.02562 * 5 4 2 7 7 C 1.34675 * 108.01907 * 359.73469 * 6 5 4 8 8 N 1.35044 * 125.65002 * 119.99929 * 4 2 1 9 9 C 1.46502 * 126.39836 * 359.95445 * 8 4 2 10 10 C 1.50704 * 109.46408 * 85.00576 * 9 8 4 11 11 O 1.21276 * 120.00357 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99777 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00198 * 180.02562 * 12 10 9 14 14 C 1.53584 * 112.66460 * 297.31693 * 13 12 10 15 15 C 1.54224 * 106.67451 * 238.57436 * 14 13 12 16 16 C 1.54754 * 104.15661 * 335.05191 * 15 14 13 17 17 C 1.54776 * 103.21877 * 37.80613 * 16 15 14 18 18 H 1.08996 * 112.61360 * 85.34804 * 17 16 15 19 19 N 1.46979 * 108.69308 * 209.81038 * 17 16 15 20 20 C 1.36934 * 125.58114 * 294.13563 * 19 17 16 21 21 H 1.08004 * 119.99682 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00256 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99678 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99897 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47233 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46748 * 119.99933 * 24 22 20 27 27 H 1.48504 * 109.46948 * 239.99568 * 24 22 20 28 28 C 1.47369 * 108.84046 * 114.15288 * 19 17 16 29 29 C 1.54863 * 104.82269 * 335.29645 * 28 19 17 30 30 H 1.09009 * 109.46477 * 300.00116 * 1 2 3 31 31 H 1.09004 * 109.46986 * 59.99365 * 1 2 3 32 32 H 1.08994 * 109.47284 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46936 * 239.99685 * 2 1 3 34 34 H 1.08999 * 109.47279 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46927 * 299.99907 * 3 2 1 36 36 H 1.08996 * 109.47295 * 60.00069 * 3 2 1 37 37 H 1.07996 * 125.99185 * 180.02562 * 6 5 4 38 38 H 1.08001 * 126.58891 * 180.28613 * 7 6 5 39 39 H 1.08992 * 109.47050 * 325.00838 * 9 8 4 40 40 H 1.08995 * 109.47107 * 205.00040 * 9 8 4 41 41 H 0.97001 * 119.99537 * 0.02562 * 12 10 9 42 42 H 1.09002 * 110.01886 * 357.88093 * 14 13 12 43 43 H 1.09003 * 110.01719 * 119.27573 * 14 13 12 44 44 H 1.08997 * 110.49355 * 216.37906 * 15 14 13 45 45 H 1.08998 * 110.60535 * 93.77386 * 15 14 13 46 46 H 1.09005 * 110.66664 * 279.37494 * 16 15 14 47 47 H 1.08998 * 110.67226 * 156.23830 * 16 15 14 48 48 H 0.97007 * 119.99743 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36968 * 216.46028 * 28 19 17 50 50 H 1.09000 * 110.46390 * 94.18410 * 28 19 17 51 51 H 1.09002 * 110.97038 * 278.95242 * 29 28 19 52 52 H 1.09006 * 110.97204 * 155.18942 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7866 -0.3617 2.4637 6 6 2.3942 -1.2205 3.2958 7 6 3.0362 -2.1397 2.5497 8 7 2.8120 -1.8131 1.2395 9 6 3.3177 -2.5299 0.0661 10 6 4.5896 -1.8775 -0.4112 11 8 5.0304 -0.9096 0.1715 12 7 5.2378 -2.3703 -1.4853 13 6 6.4744 -1.7366 -1.9490 14 6 6.2603 -0.2867 -2.4082 15 6 6.7165 -0.2166 -3.8797 16 6 7.7332 -1.3752 -4.0164 17 6 7.1155 -2.4931 -3.1421 18 1 6.3841 -3.0929 -3.6838 19 7 8.2020 -3.3187 -2.5961 20 6 9.0443 -4.1126 -3.3278 21 1 8.9375 -4.1680 -4.4011 22 6 10.0345 -4.8471 -2.6900 23 7 10.1642 -4.7799 -1.3820 24 14 11.1829 -5.9307 -3.6882 25 1 10.8313 -5.8309 -5.1275 26 1 12.5845 -5.4818 -3.4892 27 1 11.0465 -7.3403 -3.2413 28 6 8.2364 -3.1525 -1.1322 29 6 7.5907 -1.7686 -0.8753 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6769 1.9563 0.8899 37 1 2.3688 -1.1842 4.3748 38 1 3.6181 -2.9730 2.9151 39 1 2.5724 -2.4975 -0.7285 40 1 3.5195 -3.5672 0.3331 41 1 4.8854 -3.1447 -1.9511 42 1 5.2054 -0.0230 -2.3315 43 1 6.8597 0.3900 -1.7991 44 1 7.1977 0.7397 -4.0848 45 1 5.8715 -0.3692 -4.5510 46 1 8.7084 -1.0790 -3.6297 47 1 7.8117 -1.6978 -5.0546 48 1 10.8565 -5.2929 -0.9363 49 1 9.2655 -3.1635 -0.7732 50 1 7.6574 -3.9375 -0.6459 51 1 8.3106 -0.9662 -1.0370 52 1 7.1684 -1.7153 0.1282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992256183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:38 Heat of formation + Delta-G solvation = 50.482719 kcal Electronic energy + Delta-G solvation = -32189.645157 eV Core-core repulsion = 28190.706134 eV Total energy + Delta-G solvation = -3998.939023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.21990 -40.26191 -38.25314 -35.46146 -34.37420 -34.00751 -33.57046 -31.53051 -30.00862 -28.89776 -27.93025 -27.26345 -26.80439 -25.79444 -23.91964 -22.96132 -21.82838 -21.17103 -20.09471 -19.94224 -19.14836 -18.86074 -17.40538 -17.26507 -17.03856 -15.80221 -15.60201 -15.05905 -14.97545 -14.75816 -14.40239 -14.18031 -13.96909 -13.67951 -13.58610 -13.40732 -13.25102 -12.99829 -12.94487 -12.55485 -12.26998 -12.24479 -11.88088 -11.77016 -11.62137 -11.31169 -11.25751 -11.09187 -11.05861 -10.91703 -10.76201 -10.61800 -10.35140 -10.16934 -10.06568 -10.00387 -9.94404 -9.80972 -9.66116 -9.28777 -8.74382 -8.70215 -8.32470 -6.93657 -5.71962 -3.15569 1.95771 2.55768 2.56288 3.18558 3.29838 3.33892 3.39601 3.42020 4.25539 4.39977 4.45667 4.51912 4.59343 4.75092 4.86779 4.96135 5.00297 5.06849 5.14281 5.22471 5.44387 5.45211 5.51476 5.56350 5.59286 5.72264 5.73538 5.75344 5.76482 5.83072 5.90309 5.98003 6.05595 6.07735 6.12283 6.21136 6.26801 6.30128 6.33013 6.44538 6.51265 6.68182 6.69721 6.77445 6.88667 7.00871 7.11305 7.44753 7.56781 7.59032 7.80105 8.12609 8.24377 8.29172 9.13925 9.74956 10.38369 11.30592 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.002910 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.411929 B = 9620.069889 C =10570.055894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.226 3.774 5 N -0.488 5.488 6 C -0.030 4.030 7 C -0.049 4.049 8 N -0.438 5.438 9 C 0.081 3.919 10 C 0.495 3.505 11 O -0.514 6.514 12 N -0.700 5.700 13 C 0.161 3.839 14 C -0.109 4.109 15 C -0.124 4.124 16 C -0.129 4.129 17 C 0.162 3.838 18 H 0.046 0.954 19 N -0.596 5.596 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.153 3.847 29 C -0.141 4.141 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.400 0.600 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.251 0.749 49 H 0.108 0.892 50 H 0.008 0.992 51 H 0.068 0.932 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.222 6.485 0.596 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.036 4.036 5 N -0.206 5.206 6 C -0.177 4.177 7 C -0.181 4.181 8 N -0.121 5.121 9 C -0.046 4.046 10 C 0.278 3.722 11 O -0.388 6.388 12 N -0.351 5.351 13 C 0.075 3.925 14 C -0.148 4.148 15 C -0.163 4.163 16 C -0.169 4.169 17 C 0.054 3.946 18 H 0.064 0.936 19 N -0.320 5.320 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.744 3.256 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.028 3.972 29 C -0.181 4.181 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.185 0.815 38 H 0.189 0.811 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.234 0.766 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.125 0.875 50 H 0.026 0.974 51 H 0.086 0.914 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.113 7.603 1.217 18.766 hybrid contribution 1.108 -1.979 -0.835 2.417 sum -16.006 5.624 0.382 16.969 Atomic orbital electron populations 1.21790 0.93226 1.01964 1.02714 1.19508 0.96256 0.96145 0.90765 1.21749 1.01838 0.93818 1.02244 1.23098 0.96547 0.88379 0.95593 1.70149 1.24645 1.26896 0.98939 1.22187 1.01718 0.94361 0.99435 1.22655 1.07909 1.04973 0.82571 1.44811 1.38296 1.23094 1.05869 1.21719 0.96230 0.97795 0.88892 1.20509 0.85579 0.85027 0.81098 1.90772 1.66658 1.26116 1.55300 1.45832 1.25645 1.33316 1.30286 1.21677 0.83005 0.92054 0.95733 1.22252 1.00919 0.95464 0.96208 1.22360 0.98957 0.99098 0.95838 1.22933 0.98882 0.95060 1.00005 1.21797 0.90531 0.91005 0.91255 0.93607 1.44535 1.33449 1.51183 1.02815 1.19072 1.07615 1.17707 0.90559 0.90434 1.24789 0.99493 1.00453 0.95808 1.69812 1.35421 1.44767 1.06791 0.86026 0.80704 0.80014 0.78897 1.20528 1.21737 1.21816 1.21956 1.02144 0.89212 0.83850 1.23332 0.95965 1.01258 0.97533 0.91319 0.91919 0.92896 0.90685 0.92059 0.92156 0.91533 0.81496 0.81077 0.86470 0.85981 0.76568 0.92458 0.91177 0.92190 0.92311 0.90670 0.92265 0.93762 0.87456 0.97441 0.91375 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.51 9.18 37.16 0.34 -1.17 16 4 C 0.23 2.98 6.40 -155.41 -0.99 1.99 16 5 N -0.49 -7.17 11.25 -10.81 -0.12 -7.29 16 6 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 7 C -0.05 -0.60 11.58 -16.56 -0.19 -0.80 16 8 N -0.44 -5.42 2.24 -115.19 -0.26 -5.67 16 9 C 0.08 0.80 6.17 -5.19 -0.03 0.77 16 10 C 0.49 6.71 7.12 -10.98 -0.08 6.64 16 11 O -0.51 -9.00 14.28 5.56 0.08 -8.92 16 12 N -0.70 -9.53 5.23 -45.35 -0.24 -9.76 16 13 C 0.16 2.67 0.74 -129.38 -0.10 2.57 16 14 C -0.11 -1.66 5.34 -25.79 -0.14 -1.80 16 15 C -0.12 -1.74 6.84 -25.17 -0.17 -1.91 16 16 C -0.13 -2.20 6.21 -24.87 -0.15 -2.35 16 17 C 0.16 3.02 3.67 -65.60 -0.24 2.77 16 18 H 0.05 0.83 7.96 -51.93 -0.41 0.41 16 19 N -0.60 -13.98 3.03 -161.14 -0.49 -14.47 16 20 C -0.22 -5.76 10.01 -15.06 -0.15 -5.91 16 21 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -25.95 10.07 55.49 0.56 -25.40 16 24 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.15 3.59 5.90 -2.58 -0.02 3.58 16 29 C -0.14 -2.79 5.72 -24.74 -0.14 -2.93 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.71 6.85 -51.93 -0.36 0.35 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.12 0.81 7.29 -51.93 -0.38 0.43 16 40 H 0.12 0.95 8.13 -51.93 -0.42 0.52 16 41 H 0.40 4.53 8.48 -40.82 -0.35 4.18 16 42 H 0.06 0.83 7.65 -51.93 -0.40 0.44 16 43 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.11 2.91 5.83 -51.93 -0.30 2.60 16 50 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 51 H 0.07 1.37 7.62 -51.93 -0.40 0.97 16 52 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -32.71 407.11 -10.46 -43.16 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.77 Total: 6.67 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.33 Total: -0.75 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.55 Total: -62.59 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.71 -10.46 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992256183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.645 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds