Wall clock time and date at job start Wed Apr 1 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47530 * 2 1 4 4 C 1.50706 * 109.47101 * 120.00346 * 2 1 3 5 5 N 1.30497 * 125.64671 * 299.95596 * 4 2 1 6 6 C 1.34127 * 109.25542 * 180.02562 * 5 4 2 7 7 C 1.34675 * 108.01907 * 359.73469 * 6 5 4 8 8 N 1.35044 * 125.65002 * 119.99929 * 4 2 1 9 9 C 1.46502 * 126.39836 * 359.95445 * 8 4 2 10 10 C 1.50704 * 109.46408 * 85.00576 * 9 8 4 11 11 O 1.21276 * 120.00357 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99777 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00198 * 180.02562 * 12 10 9 14 14 C 1.53584 * 112.66460 * 297.31693 * 13 12 10 15 15 C 1.54224 * 106.67451 * 238.57436 * 14 13 12 16 16 C 1.54754 * 104.15661 * 335.05191 * 15 14 13 17 17 C 1.54776 * 103.21877 * 37.80613 * 16 15 14 18 18 H 1.08996 * 112.61360 * 85.34804 * 17 16 15 19 19 N 1.46979 * 108.69308 * 209.81038 * 17 16 15 20 20 C 1.36934 * 125.58114 * 294.13563 * 19 17 16 21 21 H 1.08004 * 119.99682 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00256 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99678 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99897 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47233 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46748 * 119.99933 * 24 22 20 27 27 H 1.48504 * 109.46948 * 239.99568 * 24 22 20 28 28 C 1.47369 * 108.84046 * 114.15288 * 19 17 16 29 29 C 1.54863 * 104.82269 * 335.29645 * 28 19 17 30 30 H 1.09009 * 109.46477 * 300.00116 * 1 2 3 31 31 H 1.09004 * 109.46986 * 59.99365 * 1 2 3 32 32 H 1.08994 * 109.47284 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46936 * 239.99685 * 2 1 3 34 34 H 1.08999 * 109.47279 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46927 * 299.99907 * 3 2 1 36 36 H 1.08996 * 109.47295 * 60.00069 * 3 2 1 37 37 H 1.07996 * 125.99185 * 180.02562 * 6 5 4 38 38 H 1.08001 * 126.58891 * 180.28613 * 7 6 5 39 39 H 1.08992 * 109.47050 * 325.00838 * 9 8 4 40 40 H 1.08995 * 109.47107 * 205.00040 * 9 8 4 41 41 H 0.97001 * 119.99537 * 0.02562 * 12 10 9 42 42 H 1.09002 * 110.01886 * 357.88093 * 14 13 12 43 43 H 1.09003 * 110.01719 * 119.27573 * 14 13 12 44 44 H 1.08997 * 110.49355 * 216.37906 * 15 14 13 45 45 H 1.08998 * 110.60535 * 93.77386 * 15 14 13 46 46 H 1.09005 * 110.66664 * 279.37494 * 16 15 14 47 47 H 1.08998 * 110.67226 * 156.23830 * 16 15 14 48 48 H 0.97007 * 119.99743 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36968 * 216.46028 * 28 19 17 50 50 H 1.09000 * 110.46390 * 94.18410 * 28 19 17 51 51 H 1.09002 * 110.97038 * 278.95242 * 29 28 19 52 52 H 1.09006 * 110.97204 * 155.18942 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7866 -0.3617 2.4637 6 6 2.3942 -1.2205 3.2958 7 6 3.0362 -2.1397 2.5497 8 7 2.8120 -1.8131 1.2395 9 6 3.3177 -2.5299 0.0661 10 6 4.5896 -1.8775 -0.4112 11 8 5.0304 -0.9096 0.1715 12 7 5.2378 -2.3703 -1.4853 13 6 6.4744 -1.7366 -1.9490 14 6 6.2603 -0.2867 -2.4082 15 6 6.7165 -0.2166 -3.8797 16 6 7.7332 -1.3752 -4.0164 17 6 7.1155 -2.4931 -3.1421 18 1 6.3841 -3.0929 -3.6838 19 7 8.2020 -3.3187 -2.5961 20 6 9.0443 -4.1126 -3.3278 21 1 8.9375 -4.1680 -4.4011 22 6 10.0345 -4.8471 -2.6900 23 7 10.1642 -4.7799 -1.3820 24 14 11.1829 -5.9307 -3.6882 25 1 10.8313 -5.8309 -5.1275 26 1 12.5845 -5.4818 -3.4892 27 1 11.0465 -7.3403 -3.2413 28 6 8.2364 -3.1525 -1.1322 29 6 7.5907 -1.7686 -0.8753 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6769 1.9563 0.8899 37 1 2.3688 -1.1842 4.3748 38 1 3.6181 -2.9730 2.9151 39 1 2.5724 -2.4975 -0.7285 40 1 3.5195 -3.5672 0.3331 41 1 4.8854 -3.1447 -1.9511 42 1 5.2054 -0.0230 -2.3315 43 1 6.8597 0.3900 -1.7991 44 1 7.1977 0.7397 -4.0848 45 1 5.8715 -0.3692 -4.5510 46 1 8.7084 -1.0790 -3.6297 47 1 7.8117 -1.6978 -5.0546 48 1 10.8565 -5.2929 -0.9363 49 1 9.2655 -3.1635 -0.7732 50 1 7.6574 -3.9375 -0.6459 51 1 8.3106 -0.9662 -1.0370 52 1 7.1684 -1.7153 0.1282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992256183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:37 Heat of formation + Delta-G solvation = 31.275195 kcal Electronic energy + Delta-G solvation = -32190.478058 eV Core-core repulsion = 28190.706134 eV Total energy + Delta-G solvation = -3999.771924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.14586 -41.57374 -39.56747 -36.25121 -36.07166 -34.99390 -34.76093 -33.33812 -31.60997 -29.83836 -28.98514 -28.42767 -28.01592 -27.12277 -25.74134 -23.82688 -23.03943 -22.22265 -21.66327 -21.23017 -20.30903 -19.95155 -18.91925 -18.50583 -18.12156 -17.16081 -16.86280 -16.57699 -16.07131 -15.87822 -15.60297 -15.29327 -15.16305 -15.09752 -14.64673 -14.54589 -14.49479 -14.27738 -13.92555 -13.76449 -13.64314 -13.32141 -13.13887 -12.98384 -12.94357 -12.82480 -12.67706 -12.38161 -12.33715 -12.10279 -11.99492 -11.90438 -11.86890 -11.72069 -11.64660 -11.48836 -11.26427 -11.20158 -10.91837 -10.74024 -10.38407 -10.00714 -9.26367 -8.86918 -7.74573 -5.19057 1.00572 1.47421 1.48584 1.51462 1.58059 1.69127 2.20971 2.26590 2.50593 3.33389 3.35660 3.43260 3.61048 3.65854 3.73565 3.81483 3.94941 3.95195 4.06793 4.14916 4.23153 4.34587 4.37266 4.40525 4.46275 4.58313 4.60857 4.63809 4.75177 4.79310 4.82448 4.87431 4.92550 4.94968 4.97775 5.07694 5.08032 5.15169 5.21688 5.29679 5.31765 5.36430 5.44076 5.47469 5.51185 5.64589 5.65930 5.83022 5.86340 6.20226 6.30454 6.53477 7.11543 7.17630 7.19717 7.80316 8.43601 9.26847 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.002910 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.411929 B = 9620.069889 C =10570.055894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.132 4.132 4 C 0.217 3.783 5 N -0.522 5.522 6 C -0.052 4.052 7 C -0.055 4.055 8 N -0.443 5.443 9 C 0.084 3.916 10 C 0.496 3.504 11 O -0.556 6.556 12 N -0.694 5.694 13 C 0.175 3.825 14 C -0.103 4.103 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.156 3.844 18 H 0.065 0.935 19 N -0.611 5.611 20 C -0.220 4.220 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.952 5.952 24 Si 0.974 3.026 25 H -0.263 1.263 26 H -0.298 1.298 27 H -0.296 1.296 28 C 0.164 3.836 29 C -0.129 4.129 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.181 0.819 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.414 0.586 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.067 0.933 48 H 0.243 0.757 49 H 0.067 0.933 50 H -0.014 1.014 51 H 0.058 0.942 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.564 6.436 -1.957 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.191 4.191 4 C -0.045 4.045 5 N -0.241 5.241 6 C -0.199 4.199 7 C -0.188 4.188 8 N -0.125 5.125 9 C -0.042 4.042 10 C 0.282 3.718 11 O -0.434 6.434 12 N -0.346 5.346 13 C 0.088 3.912 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.166 4.166 17 C 0.049 3.951 18 H 0.083 0.917 19 N -0.336 5.336 20 C -0.349 4.349 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.804 3.196 25 H -0.187 1.187 26 H -0.226 1.226 27 H -0.224 1.224 28 C 0.039 3.961 29 C -0.169 4.169 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.198 0.802 38 H 0.209 0.791 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.004 0.996 51 H 0.076 0.924 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.500 7.552 -1.378 20.956 hybrid contribution 1.844 -1.929 -0.005 2.669 sum -17.656 5.622 -1.383 18.581 Atomic orbital electron populations 1.21736 0.91746 1.02439 1.03033 1.19684 0.97424 0.95493 0.90285 1.21688 0.99941 0.94604 1.02818 1.23627 0.96342 0.88585 0.95992 1.70118 1.25928 1.27945 1.00062 1.22586 1.02226 0.94689 1.00398 1.23052 1.07595 1.05282 0.82828 1.44981 1.38003 1.23120 1.06414 1.21949 0.94959 0.98081 0.89179 1.21126 0.86274 0.84300 0.80138 1.90771 1.68018 1.28147 1.56414 1.45706 1.24483 1.33718 1.30687 1.21401 0.83229 0.93167 0.93449 1.22171 1.01486 0.93681 0.96840 1.22300 0.98871 0.98316 0.95234 1.22807 0.98271 0.95782 0.99766 1.22073 0.89724 0.91000 0.92318 0.91741 1.44715 1.34604 1.51520 1.02718 1.19438 1.07410 1.16930 0.91159 0.89544 1.25568 1.01457 1.02473 0.96702 1.70072 1.36008 1.45858 1.08275 0.85054 0.78269 0.77841 0.78461 1.18705 1.22603 1.22351 1.21583 0.99688 0.90606 0.84250 1.23104 0.96939 0.98436 0.98407 0.92927 0.89641 0.92336 0.88939 0.94772 0.89620 0.92924 0.80163 0.79120 0.82604 0.83363 0.74865 0.91095 0.92754 0.90789 0.89474 0.93678 0.91401 0.94708 0.91521 0.99650 0.92368 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.18 71.98 0.66 -1.30 16 2 C -0.01 -0.16 3.25 -11.54 -0.04 -0.20 16 3 C -0.13 -2.72 9.18 71.98 0.66 -2.06 16 4 C 0.22 5.44 6.40 138.13 0.88 6.33 16 5 N -0.52 -15.24 11.25 -188.13 -2.12 -17.35 16 6 C -0.05 -1.37 11.87 83.53 0.99 -0.38 16 7 C -0.06 -1.31 11.58 83.09 0.96 -0.35 16 8 N -0.44 -10.10 2.24 -518.34 -1.16 -11.26 16 9 C 0.08 1.38 6.17 85.63 0.53 1.91 16 10 C 0.50 12.37 7.12 87.66 0.62 13.00 16 11 O -0.56 -18.99 14.28 -3.02 -0.04 -19.03 16 12 N -0.69 -17.16 5.23 -415.80 -2.18 -19.34 16 13 C 0.17 5.52 0.74 5.19 0.00 5.53 16 14 C -0.10 -2.88 5.34 31.21 0.17 -2.71 16 15 C -0.11 -2.67 6.84 31.61 0.22 -2.46 16 16 C -0.13 -4.07 6.21 31.80 0.20 -3.87 16 17 C 0.16 5.50 3.67 46.24 0.17 5.67 16 18 H 0.07 2.10 7.96 -2.39 -0.02 2.08 16 19 N -0.61 -28.78 3.03 -663.71 -2.01 -30.79 16 20 C -0.22 -11.45 10.01 84.03 0.84 -10.61 16 21 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 23 N -0.95 -55.75 10.07 21.65 0.22 -55.54 16 24 Si 0.97 44.27 29.55 68.60 2.03 46.29 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 28 C 0.16 7.98 5.90 86.85 0.51 8.49 16 29 C -0.13 -5.20 5.72 31.89 0.18 -5.02 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.40 6.85 -2.38 -0.02 1.38 16 34 H 0.03 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.16 1.38 7.29 -2.39 -0.02 1.36 16 40 H 0.15 1.72 8.13 -2.39 -0.02 1.70 16 41 H 0.41 7.96 8.48 -92.71 -0.79 7.17 16 42 H 0.07 1.83 7.65 -2.39 -0.02 1.81 16 43 H 0.05 1.71 7.37 -2.39 -0.02 1.69 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 1.72 8.09 -2.38 -0.02 1.70 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.24 14.00 8.31 -92.70 -0.77 13.23 16 49 H 0.07 3.82 5.83 -2.39 -0.01 3.81 16 50 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 51 H 0.06 2.42 7.62 -2.39 -0.02 2.41 16 52 H 0.06 2.45 6.53 -2.38 -0.02 2.44 16 Total: -1.00 -74.84 407.11 2.89 -71.94 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.12 Total: 26.47 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 8.03 Total: 8.61 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -7.25 Total: -134.29 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.04 Total: -19.03 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -74.84 2.89 -71.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992256183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.219 kcal (2) G-P(sol) polarization free energy of solvation -74.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds