Wall clock time and date at job start Wed Apr 1 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46593 * 2 1 4 4 C 1.50700 * 109.47043 * 119.99648 * 2 1 3 5 5 N 1.30498 * 125.65378 * 299.96114 * 4 2 1 6 6 C 1.34130 * 109.25828 * 180.02562 * 5 4 2 7 7 C 1.34671 * 108.01665 * 359.73205 * 6 5 4 8 8 N 1.35050 * 125.64649 * 120.00068 * 4 2 1 9 9 C 1.46505 * 126.39675 * 359.97199 * 8 4 2 10 10 C 1.50695 * 109.47069 * 84.99348 * 9 8 4 11 11 O 1.21276 * 120.00420 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99677 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99888 * 180.02562 * 12 10 9 14 14 C 1.51223 * 111.06848 * 291.65982 * 13 12 10 15 15 C 1.55692 * 104.61320 * 276.12892 * 14 13 12 16 16 C 1.55029 * 105.77039 * 352.87300 * 15 14 13 17 17 C 1.50521 * 102.34536 * 335.48451 * 16 15 14 18 18 H 1.08999 * 108.14173 * 293.46568 * 17 16 15 19 19 N 1.42711 * 128.15269 * 161.02938 * 17 16 15 20 20 C 1.36936 * 127.10136 * 28.95398 * 19 17 16 21 21 H 1.08003 * 119.99941 * 342.47205 * 20 19 17 22 22 C 1.38808 * 119.99669 * 162.46238 * 20 19 17 23 23 N 1.31609 * 120.00339 * 329.62550 * 22 20 19 24 24 Si 1.86803 * 119.99574 * 149.89885 * 22 20 19 25 25 H 1.48495 * 109.47051 * 179.72587 * 24 22 20 26 26 H 1.48505 * 109.47166 * 299.72612 * 24 22 20 27 27 H 1.48498 * 109.47219 * 59.72631 * 24 22 20 28 28 C 1.49293 * 105.79542 * 209.21894 * 19 17 16 29 29 C 1.52124 * 111.08882 * 71.70036 * 13 12 10 30 30 H 1.08999 * 109.47313 * 299.99822 * 1 2 3 31 31 H 1.08992 * 109.47360 * 60.00512 * 1 2 3 32 32 H 1.09007 * 109.46632 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47313 * 240.00178 * 2 1 3 34 34 H 1.09007 * 109.47440 * 60.00116 * 3 2 1 35 35 H 1.09000 * 109.47214 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47620 * 299.99534 * 3 2 1 37 37 H 1.07993 * 125.98970 * 179.97438 * 6 5 4 38 38 H 1.08000 * 126.58953 * 180.28443 * 7 6 5 39 39 H 1.08997 * 109.46707 * 324.99101 * 9 8 4 40 40 H 1.08998 * 109.46580 * 204.99517 * 9 8 4 41 41 H 0.97001 * 120.00061 * 0.02562 * 12 10 9 42 42 H 1.09002 * 110.40555 * 34.91063 * 14 13 12 43 43 H 1.08999 * 110.41235 * 157.22784 * 14 13 12 44 44 H 1.09003 * 110.15842 * 111.86262 * 15 14 13 45 45 H 1.08991 * 110.16041 * 233.56077 * 15 14 13 46 46 H 1.09004 * 110.93434 * 217.05937 * 16 15 14 47 47 H 1.09005 * 110.45545 * 93.68887 * 16 15 14 48 48 H 0.97004 * 120.00334 * 354.15693 * 23 22 20 49 49 H 1.09000 * 110.04894 * 127.65739 * 28 19 17 50 50 H 1.08996 * 110.04845 * 249.14054 * 28 19 17 51 51 H 1.09000 * 111.15143 * 191.84970 * 29 13 12 52 52 H 1.09001 * 111.15308 * 316.07558 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7866 -0.3615 2.4638 6 6 2.3943 -1.2203 3.2959 7 6 3.0362 -2.1395 2.5498 8 7 2.8121 -1.8130 1.2396 9 6 3.3180 -2.5296 0.0662 10 6 4.5898 -1.8771 -0.4111 11 8 5.0305 -0.9091 0.1717 12 7 5.2381 -2.3699 -1.4851 13 6 6.4747 -1.7359 -1.9487 14 6 6.2007 -0.3625 -2.5194 15 6 5.7735 -0.6275 -3.9929 16 6 6.0059 -2.1413 -4.2333 17 6 7.0614 -2.4710 -3.2121 18 1 7.9768 -1.9481 -3.4892 19 7 7.4195 -3.7526 -2.6965 20 6 7.3194 -4.9584 -3.3379 21 1 6.6892 -5.0557 -4.2095 22 6 8.0282 -6.0554 -2.8678 23 7 9.1818 -5.8817 -2.2586 24 14 7.3483 -7.7788 -3.1067 25 1 8.2910 -8.7678 -2.5251 26 1 6.0324 -7.8903 -2.4276 27 1 7.1810 -8.0482 -4.5575 28 6 7.9196 -3.5082 -1.3112 29 6 7.6231 -2.0093 -0.9892 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 2.3695 -1.1835 4.3749 38 1 3.6182 -2.9727 2.9152 39 1 2.5727 -2.4974 -0.7284 40 1 3.5199 -3.5669 0.3332 41 1 4.8858 -3.1443 -1.9510 42 1 5.3933 0.1227 -1.9709 43 1 7.1022 0.2493 -2.4873 44 1 4.7197 -0.3836 -4.1281 45 1 6.3858 -0.0363 -4.6736 46 1 6.3706 -2.3236 -5.2442 47 1 5.0907 -2.7021 -4.0433 48 1 9.5778 -4.9973 -2.2125 49 1 7.3968 -4.1540 -0.6058 50 1 8.9927 -3.6929 -1.2633 51 1 8.4821 -1.3770 -1.2136 52 1 7.3074 -1.8873 0.0469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992256188.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:53 Heat of formation + Delta-G solvation = 60.117257 kcal Electronic energy + Delta-G solvation = -32619.468833 eV Core-core repulsion = 28620.947595 eV Total energy + Delta-G solvation = -3998.521238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.19918 -40.72708 -38.40229 -35.44610 -34.86005 -33.96622 -33.34215 -31.97017 -30.11609 -28.88037 -27.82073 -27.25294 -26.95727 -25.95287 -24.02156 -22.95066 -21.79593 -21.05897 -20.73682 -19.82598 -19.10614 -19.01652 -17.53163 -17.24006 -17.16600 -15.90518 -15.57070 -15.06941 -14.95869 -14.65331 -14.57988 -14.31939 -14.11440 -13.77388 -13.70762 -13.60573 -13.35360 -12.97477 -12.90760 -12.81603 -12.47436 -12.24641 -12.14209 -11.94745 -11.61408 -11.56761 -11.30045 -11.07842 -11.05552 -10.97569 -10.81157 -10.62713 -10.45646 -10.26349 -10.19528 -10.11995 -9.93000 -9.73668 -9.62013 -9.27636 -8.80480 -8.50535 -8.30661 -7.07541 -6.22319 -3.29257 1.98932 2.59474 2.62128 3.20284 3.38412 3.40453 3.42733 3.61543 4.27613 4.30895 4.49787 4.51609 4.57252 4.70991 4.82764 4.96843 5.00931 5.02102 5.05545 5.16405 5.21520 5.41714 5.46560 5.52684 5.53258 5.56668 5.60963 5.64276 5.74574 5.76080 5.78426 5.84204 5.84476 6.00473 6.08909 6.09300 6.14427 6.19945 6.23201 6.29852 6.32922 6.38452 6.51747 6.65878 6.78516 6.80121 6.93580 6.95152 7.13487 7.67225 7.68962 8.14376 8.30830 8.32686 8.89195 9.66536 10.27623 11.08260 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.003461 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.783454 B = 8087.568986 C = 8950.567310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.226 3.774 5 N -0.489 5.489 6 C -0.030 4.030 7 C -0.049 4.049 8 N -0.437 5.437 9 C 0.080 3.920 10 C 0.495 3.505 11 O -0.525 6.525 12 N -0.687 5.687 13 C 0.133 3.867 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.160 3.840 18 H 0.021 0.979 19 N -0.581 5.581 20 C -0.346 4.346 21 H 0.067 0.933 22 C -0.019 4.019 23 N -0.906 5.906 24 Si 1.059 2.941 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.293 1.293 28 C 0.143 3.857 29 C -0.126 4.126 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.405 0.595 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.270 0.730 49 H 0.036 0.964 50 H 0.044 0.956 51 H 0.072 0.928 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 9.629 1.980 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.036 4.036 5 N -0.207 5.207 6 C -0.178 4.178 7 C -0.181 4.181 8 N -0.119 5.119 9 C -0.047 4.047 10 C 0.278 3.722 11 O -0.401 6.401 12 N -0.339 5.339 13 C 0.045 3.955 14 C -0.149 4.149 15 C -0.155 4.155 16 C -0.150 4.150 17 C 0.050 3.950 18 H 0.039 0.961 19 N -0.306 5.306 20 C -0.473 4.473 21 H 0.085 0.915 22 C -0.223 4.223 23 N -0.546 5.546 24 Si 0.888 3.112 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.220 1.220 28 C 0.018 3.982 29 C -0.164 4.164 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.241 0.759 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.090 0.910 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.822 9.164 2.815 16.821 hybrid contribution 0.377 0.228 -0.769 0.886 sum -13.446 9.391 2.046 16.528 Atomic orbital electron populations 1.21789 0.93227 1.02002 1.02678 1.19502 0.96261 0.96097 0.90810 1.21746 1.01760 0.93864 1.02215 1.23089 0.96560 0.88408 0.95572 1.70146 1.24648 1.26961 0.98934 1.22174 1.01782 0.94422 0.99400 1.22645 1.07953 1.04927 0.82616 1.44819 1.38174 1.23024 1.05886 1.21722 0.96330 0.97832 0.88799 1.20491 0.85614 0.84934 0.81120 1.90745 1.67152 1.26476 1.55742 1.45688 1.25253 1.33123 1.29792 1.21542 0.83414 0.93216 0.97283 1.21852 1.01939 0.95780 0.95343 1.22608 1.00688 0.96108 0.96055 1.21579 0.99093 0.94932 0.99438 1.20799 0.94975 0.88314 0.90887 0.96141 1.43664 1.75271 1.01457 1.10183 1.19633 1.26884 0.86420 1.14355 0.91489 1.25675 0.94237 1.02691 0.99657 1.70798 1.13132 1.25746 1.44885 0.83613 0.75497 0.76224 0.75844 1.21114 1.22204 1.21953 1.22134 0.98542 0.91436 0.86066 1.22534 0.96714 0.98025 0.99176 0.91329 0.91932 0.92869 0.90667 0.91558 0.92134 0.92168 0.81531 0.81153 0.86515 0.85962 0.75945 0.91202 0.91071 0.92126 0.91795 0.91626 0.91798 0.91859 0.94611 0.93836 0.90975 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.54 9.17 37.16 0.34 -1.19 16 4 C 0.23 3.09 6.40 -155.41 -0.99 2.10 16 5 N -0.49 -7.34 11.25 -10.82 -0.12 -7.46 16 6 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 7 C -0.05 -0.63 11.58 -16.56 -0.19 -0.82 16 8 N -0.44 -5.69 2.24 -115.19 -0.26 -5.95 16 9 C 0.08 0.89 6.17 -5.19 -0.03 0.86 16 10 C 0.50 7.10 7.21 -10.99 -0.08 7.02 16 11 O -0.53 -9.31 14.57 5.56 0.08 -9.23 16 12 N -0.69 -10.12 4.35 -46.58 -0.20 -10.32 16 13 C 0.13 2.17 0.41 -130.71 -0.05 2.12 16 14 C -0.11 -1.59 6.05 -26.19 -0.16 -1.75 16 15 C -0.12 -1.50 6.90 -24.22 -0.17 -1.66 16 16 C -0.11 -1.72 6.37 -26.90 -0.17 -1.89 16 17 C 0.16 2.99 2.65 -68.71 -0.18 2.81 16 18 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 19 N -0.58 -13.15 2.98 -162.73 -0.49 -13.63 16 20 C -0.35 -8.83 10.01 -15.06 -0.15 -8.98 16 21 H 0.07 1.70 7.99 -52.48 -0.42 1.28 16 22 C -0.02 -0.52 5.15 -17.44 -0.09 -0.61 16 23 N -0.91 -26.07 13.02 55.49 0.72 -25.35 16 24 Si 1.06 23.75 30.01 -169.99 -5.10 18.65 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.14 3.12 5.83 -0.81 0.00 3.11 16 29 C -0.13 -2.29 6.22 -25.49 -0.16 -2.45 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.76 6.85 -51.93 -0.36 0.41 16 34 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.12 0.98 7.29 -51.93 -0.38 0.60 16 40 H 0.12 1.15 8.13 -51.93 -0.42 0.73 16 41 H 0.40 5.82 7.76 -40.82 -0.32 5.51 16 42 H 0.07 1.05 6.84 -51.93 -0.36 0.69 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.95 7.31 -51.93 -0.38 0.57 16 48 H 0.27 7.83 6.09 -40.82 -0.25 7.58 16 49 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.04 1.05 6.15 -51.93 -0.32 0.73 16 51 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 52 H 0.07 1.31 7.17 -51.93 -0.37 0.94 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -32.26 407.56 -10.18 -42.44 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.70 Total: 7.99 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.26 Total: -3.27 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.35 Total: -62.71 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.10 Total: 18.65 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.26 -10.18 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992256188.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.559 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds