Wall clock time and date at job start Wed Apr 1 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46593 * 2 1 4 4 C 1.50700 * 109.47043 * 119.99648 * 2 1 3 5 5 N 1.30498 * 125.65378 * 299.96114 * 4 2 1 6 6 C 1.34130 * 109.25828 * 180.02562 * 5 4 2 7 7 C 1.34671 * 108.01665 * 359.73205 * 6 5 4 8 8 N 1.35050 * 125.64649 * 120.00068 * 4 2 1 9 9 C 1.46505 * 126.39675 * 359.97199 * 8 4 2 10 10 C 1.50695 * 109.47069 * 84.99348 * 9 8 4 11 11 O 1.21276 * 120.00420 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99677 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99888 * 180.02562 * 12 10 9 14 14 C 1.51223 * 111.06848 * 291.65982 * 13 12 10 15 15 C 1.55692 * 104.61320 * 276.12892 * 14 13 12 16 16 C 1.55029 * 105.77039 * 352.87300 * 15 14 13 17 17 C 1.50521 * 102.34536 * 335.48451 * 16 15 14 18 18 H 1.08999 * 108.14173 * 293.46568 * 17 16 15 19 19 N 1.42711 * 128.15269 * 161.02938 * 17 16 15 20 20 C 1.36936 * 127.10136 * 28.95398 * 19 17 16 21 21 H 1.08003 * 119.99941 * 342.47205 * 20 19 17 22 22 C 1.38808 * 119.99669 * 162.46238 * 20 19 17 23 23 N 1.31609 * 120.00339 * 329.62550 * 22 20 19 24 24 Si 1.86803 * 119.99574 * 149.89885 * 22 20 19 25 25 H 1.48495 * 109.47051 * 179.72587 * 24 22 20 26 26 H 1.48505 * 109.47166 * 299.72612 * 24 22 20 27 27 H 1.48498 * 109.47219 * 59.72631 * 24 22 20 28 28 C 1.49293 * 105.79542 * 209.21894 * 19 17 16 29 29 C 1.52124 * 111.08882 * 71.70036 * 13 12 10 30 30 H 1.08999 * 109.47313 * 299.99822 * 1 2 3 31 31 H 1.08992 * 109.47360 * 60.00512 * 1 2 3 32 32 H 1.09007 * 109.46632 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47313 * 240.00178 * 2 1 3 34 34 H 1.09007 * 109.47440 * 60.00116 * 3 2 1 35 35 H 1.09000 * 109.47214 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47620 * 299.99534 * 3 2 1 37 37 H 1.07993 * 125.98970 * 179.97438 * 6 5 4 38 38 H 1.08000 * 126.58953 * 180.28443 * 7 6 5 39 39 H 1.08997 * 109.46707 * 324.99101 * 9 8 4 40 40 H 1.08998 * 109.46580 * 204.99517 * 9 8 4 41 41 H 0.97001 * 120.00061 * 0.02562 * 12 10 9 42 42 H 1.09002 * 110.40555 * 34.91063 * 14 13 12 43 43 H 1.08999 * 110.41235 * 157.22784 * 14 13 12 44 44 H 1.09003 * 110.15842 * 111.86262 * 15 14 13 45 45 H 1.08991 * 110.16041 * 233.56077 * 15 14 13 46 46 H 1.09004 * 110.93434 * 217.05937 * 16 15 14 47 47 H 1.09005 * 110.45545 * 93.68887 * 16 15 14 48 48 H 0.97004 * 120.00334 * 354.15693 * 23 22 20 49 49 H 1.09000 * 110.04894 * 127.65739 * 28 19 17 50 50 H 1.08996 * 110.04845 * 249.14054 * 28 19 17 51 51 H 1.09000 * 111.15143 * 191.84970 * 29 13 12 52 52 H 1.09001 * 111.15308 * 316.07558 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7866 -0.3615 2.4638 6 6 2.3943 -1.2203 3.2959 7 6 3.0362 -2.1395 2.5498 8 7 2.8121 -1.8130 1.2396 9 6 3.3180 -2.5296 0.0662 10 6 4.5898 -1.8771 -0.4111 11 8 5.0305 -0.9091 0.1717 12 7 5.2381 -2.3699 -1.4851 13 6 6.4747 -1.7359 -1.9487 14 6 6.2007 -0.3625 -2.5194 15 6 5.7735 -0.6275 -3.9929 16 6 6.0059 -2.1413 -4.2333 17 6 7.0614 -2.4710 -3.2121 18 1 7.9768 -1.9481 -3.4892 19 7 7.4195 -3.7526 -2.6965 20 6 7.3194 -4.9584 -3.3379 21 1 6.6892 -5.0557 -4.2095 22 6 8.0282 -6.0554 -2.8678 23 7 9.1818 -5.8817 -2.2586 24 14 7.3483 -7.7788 -3.1067 25 1 8.2910 -8.7678 -2.5251 26 1 6.0324 -7.8903 -2.4276 27 1 7.1810 -8.0482 -4.5575 28 6 7.9196 -3.5082 -1.3112 29 6 7.6231 -2.0093 -0.9892 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 2.3695 -1.1835 4.3749 38 1 3.6182 -2.9727 2.9152 39 1 2.5727 -2.4974 -0.7284 40 1 3.5199 -3.5669 0.3332 41 1 4.8858 -3.1443 -1.9510 42 1 5.3933 0.1227 -1.9709 43 1 7.1022 0.2493 -2.4873 44 1 4.7197 -0.3836 -4.1281 45 1 6.3858 -0.0363 -4.6736 46 1 6.3706 -2.3236 -5.2442 47 1 5.0907 -2.7021 -4.0433 48 1 9.5778 -4.9973 -2.2125 49 1 7.3968 -4.1540 -0.6058 50 1 8.9927 -3.6929 -1.2633 51 1 8.4821 -1.3770 -1.2136 52 1 7.3074 -1.8873 0.0469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992256188.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:51 Heat of formation + Delta-G solvation = 42.012896 kcal Electronic energy + Delta-G solvation = -32620.253897 eV Core-core repulsion = 28620.947595 eV Total energy + Delta-G solvation = -3999.306302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.17498 -42.07466 -39.68518 -36.49859 -36.26920 -34.98783 -34.60065 -33.69794 -31.69412 -29.84885 -28.89482 -28.43433 -28.03119 -27.31534 -25.85747 -23.85212 -22.95997 -22.25890 -21.99107 -21.39461 -20.30566 -20.08037 -19.03566 -18.58571 -18.17660 -17.30743 -16.69399 -16.33843 -16.13576 -16.02493 -15.75516 -15.51760 -15.40884 -15.22200 -14.85447 -14.64281 -14.54491 -14.27669 -14.17409 -13.79157 -13.64398 -13.48861 -13.40566 -13.00095 -12.99594 -12.55714 -12.50803 -12.39932 -12.30014 -12.17488 -12.11456 -11.98943 -11.89025 -11.86153 -11.61945 -11.42092 -11.37135 -11.08999 -10.94133 -10.49811 -10.34738 -10.07002 -9.28385 -9.00196 -8.29156 -5.32599 0.99433 1.50741 1.60390 1.66256 1.66485 1.84724 2.19666 2.27907 2.64342 2.93832 3.16979 3.41311 3.54939 3.67426 3.69282 3.75041 3.80169 3.94792 4.02792 4.11629 4.13218 4.19713 4.21470 4.30295 4.35319 4.37937 4.51078 4.58798 4.67453 4.72972 4.81108 4.83247 4.86067 4.88747 4.90924 4.95929 4.98392 5.02827 5.06166 5.12250 5.14858 5.28018 5.31148 5.34812 5.42221 5.44499 5.62475 5.76151 5.84336 6.17833 6.28335 6.53363 6.88599 7.15291 7.17311 7.69231 8.37112 9.00898 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.003461 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.783454 B = 8087.568986 C = 8950.567310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.131 4.131 4 C 0.217 3.783 5 N -0.520 5.520 6 C -0.050 4.050 7 C -0.057 4.057 8 N -0.442 5.442 9 C 0.083 3.917 10 C 0.499 3.501 11 O -0.560 6.560 12 N -0.685 5.685 13 C 0.147 3.853 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.107 4.107 17 C 0.146 3.854 18 H 0.003 0.997 19 N -0.593 5.593 20 C -0.337 4.337 21 H 0.072 0.928 22 C -0.076 4.076 23 N -0.944 5.944 24 Si 1.109 2.891 25 H -0.302 1.302 26 H -0.275 1.275 27 H -0.275 1.275 28 C 0.152 3.848 29 C -0.116 4.116 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.183 0.817 38 H 0.190 0.810 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.409 0.591 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.253 0.747 49 H 0.015 0.985 50 H 0.011 0.989 51 H 0.077 0.923 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.765 9.922 0.392 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.189 4.189 4 C -0.045 4.045 5 N -0.239 5.239 6 C -0.197 4.197 7 C -0.189 4.189 8 N -0.124 5.124 9 C -0.043 4.043 10 C 0.284 3.716 11 O -0.439 6.439 12 N -0.336 5.336 13 C 0.059 3.941 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.145 4.145 17 C 0.037 3.963 18 H 0.020 0.980 19 N -0.317 5.317 20 C -0.465 4.465 21 H 0.090 0.910 22 C -0.273 4.273 23 N -0.586 5.586 24 Si 0.934 3.066 25 H -0.229 1.229 26 H -0.201 1.201 27 H -0.201 1.201 28 C 0.027 3.973 29 C -0.154 4.154 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.200 0.800 38 H 0.207 0.793 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.245 0.755 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.029 0.971 51 H 0.095 0.905 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.606 9.480 1.205 19.159 hybrid contribution 1.291 0.203 -0.260 1.332 sum -15.315 9.683 0.945 18.144 Atomic orbital electron populations 1.21736 0.91762 1.02374 1.03099 1.19676 0.97420 0.95608 0.90202 1.21682 0.99956 0.94420 1.02870 1.23629 0.96322 0.88553 0.96041 1.70124 1.25843 1.27953 0.99953 1.22589 1.02075 0.94590 1.00406 1.23043 1.07786 1.05315 0.82795 1.44970 1.37991 1.23096 1.06334 1.21893 0.95262 0.97961 0.89170 1.20988 0.86193 0.84259 0.80164 1.90742 1.68324 1.28174 1.56623 1.45635 1.24575 1.33207 1.30205 1.21372 0.83475 0.94226 0.95042 1.21838 1.02073 0.94172 0.96357 1.22542 1.02570 0.94127 0.94766 1.21591 0.98000 0.96876 0.98046 1.21009 0.95477 0.86242 0.93523 0.97995 1.43772 1.75123 1.02285 1.10529 1.19918 1.25224 0.87374 1.13996 0.91025 1.26980 0.94023 1.06376 0.99925 1.70923 1.14968 1.24716 1.48024 0.82932 0.75153 0.71740 0.76738 1.22889 1.20109 1.20075 1.21933 0.96209 0.93445 0.85737 1.22410 0.98127 0.95455 0.99457 0.92763 0.89625 0.92516 0.89242 0.92812 0.94702 0.89602 0.79992 0.79270 0.83114 0.83981 0.75460 0.91240 0.90941 0.89569 0.90404 0.91859 0.90844 0.93635 0.96666 0.97108 0.90477 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.18 71.98 0.66 -1.42 16 2 C -0.01 -0.17 3.25 -11.54 -0.04 -0.21 16 3 C -0.13 -2.72 9.17 71.98 0.66 -2.06 16 4 C 0.22 5.63 6.40 138.13 0.88 6.51 16 5 N -0.52 -15.38 11.25 -188.13 -2.12 -17.49 16 6 C -0.05 -1.33 11.87 83.52 0.99 -0.34 16 7 C -0.06 -1.40 11.58 83.09 0.96 -0.44 16 8 N -0.44 -10.69 2.24 -518.34 -1.16 -11.86 16 9 C 0.08 1.60 6.17 85.63 0.53 2.13 16 10 C 0.50 13.28 7.21 87.65 0.63 13.92 16 11 O -0.56 -19.23 14.57 -3.02 -0.04 -19.27 16 12 N -0.68 -18.79 4.35 -419.68 -1.82 -20.61 16 13 C 0.15 4.62 0.41 4.32 0.00 4.62 16 14 C -0.11 -2.80 6.05 30.94 0.19 -2.61 16 15 C -0.10 -2.25 6.90 32.22 0.22 -2.03 16 16 C -0.11 -3.00 6.37 30.49 0.19 -2.80 16 17 C 0.15 5.33 2.65 46.47 0.12 5.46 16 18 H 0.00 0.11 7.99 -2.39 -0.02 0.09 16 19 N -0.59 -26.98 2.98 -668.75 -1.99 -28.98 16 20 C -0.34 -17.14 10.01 84.03 0.84 -16.30 16 21 H 0.07 3.53 7.99 -2.91 -0.02 3.51 16 22 C -0.08 -4.11 5.15 84.86 0.44 -3.67 16 23 N -0.94 -56.13 13.02 21.65 0.28 -55.85 16 24 Si 1.11 47.73 30.01 68.60 2.06 49.79 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 C 0.15 6.86 5.83 86.93 0.51 7.37 16 29 C -0.12 -4.26 6.22 31.40 0.20 -4.06 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.09 1.49 6.85 -2.39 -0.02 1.48 16 34 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.18 3.90 8.06 -2.91 -0.02 3.87 16 38 H 0.19 3.69 8.06 -2.91 -0.02 3.66 16 39 H 0.15 1.88 7.29 -2.39 -0.02 1.86 16 40 H 0.14 2.22 8.13 -2.39 -0.02 2.20 16 41 H 0.41 10.71 7.76 -92.71 -0.72 9.99 16 42 H 0.07 1.90 6.84 -2.39 -0.02 1.88 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.07 1.93 7.31 -2.38 -0.02 1.91 16 48 H 0.25 15.45 6.09 -92.71 -0.56 14.89 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.01 0.57 6.15 -2.39 -0.01 0.55 16 51 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 52 H 0.06 2.46 7.17 -2.39 -0.02 2.45 16 Total: -1.00 -72.59 407.56 3.58 -69.01 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.40 Total: 31.21 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 7.99 Total: 4.05 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -6.82 Total: -134.79 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.06 Total: 49.79 kcal Total: -72.59 3.58 -69.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992256188.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.020 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds