Wall clock time and date at job start Wed Apr 1 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47282 * 2 1 4 4 C 1.50706 * 109.47526 * 120.00233 * 2 1 3 5 5 C 1.39675 * 126.06494 * 275.26924 * 4 2 1 6 6 C 1.38407 * 105.35553 * 180.10350 * 5 4 2 7 7 C 1.47161 * 126.87946 * 179.91334 * 6 5 4 8 8 O 1.21633 * 119.99592 * 184.57148 * 7 6 5 9 9 N 1.34770 * 120.00510 * 4.56985 * 7 6 5 10 10 C 1.46500 * 120.00213 * 176.02179 * 9 7 6 11 11 C 1.53783 * 112.56865 * 300.62478 * 10 9 7 12 12 C 1.54219 * 106.57114 * 238.41536 * 11 10 9 13 13 C 1.54757 * 104.27995 * 335.22523 * 12 11 10 14 14 C 1.54774 * 103.21117 * 37.73819 * 13 12 11 15 15 H 1.09004 * 111.86628 * 85.85715 * 14 13 12 16 16 N 1.46981 * 108.68179 * 209.80228 * 14 13 12 17 17 C 1.36929 * 125.58350 * 294.12452 * 16 14 13 18 18 H 1.08006 * 119.99972 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00578 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99687 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00512 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47137 * 59.99681 * 21 19 17 23 23 H 1.48502 * 109.47182 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47113 * 299.99847 * 21 19 17 25 25 C 1.47372 * 108.83796 * 114.12526 * 16 14 13 26 26 C 1.54868 * 104.82392 * 335.31198 * 25 16 14 27 27 N 1.36594 * 106.23250 * 359.65166 * 6 5 4 28 28 C 1.46496 * 125.19189 * 180.24619 * 27 6 5 29 29 N 1.28446 * 109.61760 * 0.22639 * 27 6 5 30 30 H 1.08995 * 109.47694 * 59.99588 * 1 2 3 31 31 H 1.09007 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47065 * 299.99609 * 1 2 3 33 33 H 1.09002 * 109.47065 * 240.00391 * 2 1 3 34 34 H 1.08991 * 109.47575 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47150 * 300.00627 * 3 2 1 36 36 H 1.09002 * 109.46752 * 60.00199 * 3 2 1 37 37 H 1.08004 * 127.32077 * 0.02562 * 5 4 2 38 38 H 0.97001 * 120.00121 * 356.02311 * 9 7 6 39 39 H 1.08997 * 109.99282 * 119.18586 * 11 10 9 40 40 H 1.08997 * 110.15019 * 357.72771 * 11 10 9 41 41 H 1.09004 * 110.49244 * 216.48882 * 12 11 10 42 42 H 1.09005 * 110.49717 * 93.96146 * 12 11 10 43 43 H 1.08994 * 110.67563 * 156.17806 * 13 12 11 44 44 H 1.09011 * 110.66787 * 279.14350 * 13 12 11 45 45 H 0.97003 * 120.00419 * 180.02562 * 20 19 17 46 46 H 1.09003 * 110.37022 * 94.14695 * 25 16 14 47 47 H 1.09004 * 110.36684 * 216.47540 * 25 16 14 48 48 H 1.09000 * 110.96497 * 155.19037 * 26 25 16 49 49 H 1.09000 * 110.97069 * 278.95143 * 26 25 16 50 50 H 1.09000 * 109.47104 * 84.26683 * 28 27 6 51 51 H 1.09007 * 109.47284 * 204.26696 * 28 27 6 52 52 H 1.09002 * 109.47419 * 324.26673 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2088 -0.1417 2.4939 6 6 2.6850 -1.1661 3.2937 7 6 3.0335 -1.0829 4.7210 8 8 3.5215 -2.0440 5.2848 9 7 2.8121 0.0579 5.4035 10 6 3.0774 0.1134 6.8432 11 6 2.2504 -0.9126 7.6358 12 6 1.4180 -0.1117 8.6575 13 6 2.2226 1.1937 8.8659 14 6 2.7626 1.5063 7.4495 15 1 2.0430 2.0703 6.8560 16 7 4.0412 2.2194 7.5799 17 6 4.2050 3.4709 8.1109 18 1 3.3491 4.0183 8.4773 19 6 5.4709 4.0366 8.1772 20 7 6.5139 3.3697 7.7302 21 14 5.6942 5.7441 8.9009 22 1 5.2243 5.7501 10.3096 23 1 7.1312 6.1162 8.8573 24 1 4.9047 6.7234 8.1116 25 6 5.1181 1.3670 7.0457 26 6 4.5788 -0.0792 7.1730 27 7 2.7611 -2.2709 2.4941 28 6 3.2130 -3.5959 2.9257 29 7 2.3756 -1.9709 1.3061 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.0158 0.8804 2.7846 38 1 2.4771 0.8422 4.9415 39 1 2.9135 -1.6044 8.1552 40 1 1.5898 -1.4614 6.9646 41 1 1.3328 -0.6613 9.5950 42 1 0.4295 0.1095 8.2548 43 1 1.5718 1.9953 9.2152 44 1 3.0423 1.0328 9.5662 45 1 7.3986 3.7648 7.7769 46 1 5.3108 1.6094 6.0006 47 1 6.0257 1.4869 7.6374 48 1 5.0560 -0.7386 6.4480 49 1 4.7101 -0.4567 8.1871 50 1 2.3798 -4.1349 3.3767 51 1 3.5819 -4.1525 2.0641 52 1 4.0135 -3.4864 3.6573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992372152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:05 Heat of formation + Delta-G solvation = 42.703150 kcal Electronic energy + Delta-G solvation = -31963.043551 eV Core-core repulsion = 27963.767180 eV Total energy + Delta-G solvation = -3999.276370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.62154 -41.52603 -39.44065 -36.88011 -36.03893 -34.97446 -33.44199 -33.18375 -32.24414 -31.10617 -28.41849 -28.04625 -27.71264 -27.51403 -25.72421 -24.64095 -23.55665 -22.36758 -21.56532 -21.24409 -20.33640 -19.97065 -18.88792 -18.75184 -17.35440 -17.20561 -17.09031 -16.82401 -16.08302 -16.02047 -15.57630 -15.17427 -15.03996 -15.01187 -14.84453 -14.60558 -14.43987 -14.19333 -13.90819 -13.52562 -13.48065 -13.37991 -13.19179 -12.91809 -12.87320 -12.79436 -12.62432 -12.30840 -12.29074 -12.14852 -12.05779 -12.01096 -11.90587 -11.70462 -11.59970 -11.49698 -11.47014 -11.24928 -10.96086 -10.69356 -10.28268 -9.95774 -9.86568 -8.84693 -7.71645 -5.16450 0.18903 1.34877 1.49781 1.51972 1.52060 1.58132 2.12418 2.15652 2.52940 3.29970 3.37534 3.39427 3.56271 3.64136 3.91357 3.94922 3.95399 4.14015 4.27225 4.29941 4.32654 4.36564 4.40755 4.46045 4.47796 4.56593 4.59843 4.61837 4.65312 4.73213 4.81168 4.88096 4.89333 4.96402 5.05803 5.07060 5.09757 5.16547 5.20533 5.22792 5.33372 5.42815 5.45858 5.48406 5.52079 5.53651 5.64223 5.66615 5.72407 5.84827 6.32897 6.41443 6.99754 7.09204 7.13846 7.82495 8.46190 9.29424 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.003233 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.091370 B = 8657.897995 C = 9798.539690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.026 3.974 5 C -0.179 4.179 6 C -0.051 4.051 7 C 0.593 3.407 8 O -0.558 6.558 9 N -0.684 5.684 10 C 0.174 3.826 11 C -0.103 4.103 12 C -0.110 4.110 13 C -0.125 4.125 14 C 0.154 3.846 15 H 0.059 0.941 16 N -0.611 5.611 17 C -0.225 4.225 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.975 3.025 22 H -0.277 1.277 23 H -0.300 1.300 24 H -0.278 1.278 25 C 0.162 3.838 26 C -0.129 4.129 27 N -0.265 5.265 28 C 0.085 3.915 29 N -0.293 5.293 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.175 0.825 38 H 0.410 0.590 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.244 0.756 46 H -0.019 1.019 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.111 0.889 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 -9.754 -11.557 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.130 4.130 5 C -0.208 4.208 6 C -0.179 4.179 7 C 0.379 3.621 8 O -0.438 6.438 9 N -0.334 5.334 10 C 0.087 3.913 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.165 4.165 14 C 0.047 3.953 15 H 0.077 0.923 16 N -0.335 5.335 17 C -0.353 4.353 18 H 0.104 0.896 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.804 3.196 22 H -0.204 1.204 23 H -0.227 1.227 24 H -0.204 1.204 25 C 0.037 3.963 26 C -0.168 4.168 27 N -0.052 5.052 28 C -0.055 4.055 29 N -0.126 5.126 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.193 0.807 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.053 0.947 46 H -0.001 1.001 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.113 0.887 51 H 0.130 0.870 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.132 -11.427 -11.663 20.953 hybrid contribution 0.773 1.881 0.640 2.132 sum -12.358 -9.546 -11.024 19.115 Atomic orbital electron populations 1.21782 0.92835 1.01779 1.03062 1.19535 0.96437 0.95254 0.91590 1.21836 1.00800 0.94071 1.03358 1.22422 1.03574 0.89819 0.97159 1.22354 1.05522 1.00096 0.92854 1.21416 1.12448 0.90189 0.93858 1.16979 0.77789 0.83226 0.84100 1.90749 1.45103 1.37545 1.70380 1.45496 1.65889 1.13322 1.08713 1.21559 0.95079 0.95809 0.78840 1.22231 0.98054 0.96530 0.97421 1.22302 0.98427 0.95040 0.99015 1.22809 0.98986 0.97661 0.97018 1.22053 0.88281 0.89557 0.95362 0.92295 1.44697 1.02239 1.15465 1.71069 1.19368 0.93394 0.91237 1.31344 0.89624 1.25564 0.95560 1.02236 1.02632 1.70055 0.98431 1.38034 1.53620 0.85189 0.76009 0.79896 0.78465 1.20353 1.22665 1.20379 1.21627 0.93579 0.86387 0.94728 1.23144 0.95347 0.97621 1.00713 1.45764 1.44557 1.10147 1.04781 1.22446 1.02310 0.78032 1.02664 1.73087 1.17820 1.18644 1.03097 0.90093 0.93472 0.92317 0.89805 0.93432 0.90080 0.91836 0.80724 0.75369 0.91473 0.91528 0.90250 0.90049 0.91466 0.93126 0.94670 1.00120 0.91070 0.91945 0.91315 0.88732 0.87035 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.17 71.98 0.66 -1.30 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.18 16 3 C -0.14 -2.17 8.79 71.98 0.63 -1.53 16 4 C 0.03 0.63 6.13 43.05 0.26 0.89 16 5 C -0.18 -4.37 9.65 22.66 0.22 -4.15 16 6 C -0.05 -1.42 6.96 40.79 0.28 -1.14 16 7 C 0.59 18.42 6.97 86.59 0.60 19.03 16 8 O -0.56 -19.34 12.67 -4.13 -0.05 -19.39 16 9 N -0.68 -20.84 5.24 -418.95 -2.19 -23.04 16 10 C 0.17 5.88 0.74 5.26 0.00 5.89 16 11 C -0.10 -3.00 5.30 31.27 0.17 -2.84 16 12 C -0.11 -2.80 6.83 31.61 0.22 -2.59 16 13 C -0.12 -4.13 6.21 31.80 0.20 -3.93 16 14 C 0.15 5.77 3.64 46.24 0.17 5.94 16 15 H 0.06 2.10 8.02 -2.39 -0.02 2.08 16 16 N -0.61 -29.59 3.03 -663.68 -2.01 -31.60 16 17 C -0.22 -11.91 10.01 84.03 0.84 -11.07 16 18 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 20 N -0.95 -56.34 10.07 21.65 0.22 -56.13 16 21 Si 0.98 44.77 29.55 68.60 2.03 46.80 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.16 8.08 5.90 86.85 0.51 8.59 16 26 C -0.13 -5.23 5.74 31.89 0.18 -5.05 16 27 N -0.27 -7.07 3.75 -356.02 -1.33 -8.40 16 28 C 0.08 1.75 10.71 127.77 1.37 3.12 16 29 N -0.29 -7.80 11.90 -47.49 -0.57 -8.36 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.06 0.94 7.37 -2.39 -0.02 0.92 16 37 H 0.18 3.50 7.05 -2.91 -0.02 3.48 16 38 H 0.41 11.18 7.55 -92.71 -0.70 10.48 16 39 H 0.07 2.03 7.38 -2.39 -0.02 2.01 16 40 H 0.07 1.85 7.52 -2.39 -0.02 1.84 16 41 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.05 1.93 8.09 -2.38 -0.02 1.91 16 45 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 46 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 47 H 0.07 4.10 5.83 -2.39 -0.01 4.09 16 48 H 0.06 2.59 6.69 -2.39 -0.02 2.57 16 49 H 0.07 2.77 7.63 -2.39 -0.02 2.76 16 50 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 52 H 0.10 2.27 6.55 -2.39 -0.02 2.26 16 Total: -1.00 -67.70 402.68 3.05 -64.64 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.22 Total: 29.07 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.75 Total: 6.40 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -5.89 Total: -127.53 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.39 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.70 3.05 -64.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992372152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.347 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds