Wall clock time and date at job start Wed Apr 1 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46937 * 2 1 4 4 C 1.50702 * 109.46976 * 119.99260 * 2 1 3 5 5 N 1.30445 * 125.99052 * 300.00756 * 4 2 1 6 6 N 1.39938 * 108.89359 * 179.97438 * 5 4 2 7 7 H 0.96999 * 125.74721 * 179.97438 * 6 5 4 8 8 C 1.34259 * 108.49455 * 359.74415 * 6 5 4 9 9 C 1.38050 * 107.41548 * 0.39986 * 8 6 5 10 10 C 1.47428 * 126.41238 * 179.87075 * 9 8 6 11 11 O 1.21599 * 119.99909 * 186.13643 * 10 9 8 12 12 N 1.34774 * 120.00088 * 6.13801 * 10 9 8 13 13 C 1.48657 * 125.78475 * 175.51697 * 12 10 9 14 14 C 1.53055 * 103.44780 * 155.61872 * 13 12 10 15 15 H 1.09000 * 110.55643 * 283.26871 * 14 13 12 16 16 C 1.51621 * 116.68067 * 155.88577 * 14 13 12 17 17 C 1.53809 * 107.02319 * 183.73281 * 16 14 13 18 18 C 1.52533 * 111.70038 * 57.53606 * 17 16 14 19 19 C 1.53839 * 111.66325 * 305.96260 * 18 17 16 20 20 H 1.09001 * 109.93840 * 176.66326 * 19 18 17 21 21 N 1.46500 * 109.94028 * 297.80961 * 19 18 17 22 22 C 1.36933 * 119.99913 * 274.99938 * 21 19 18 23 23 H 1.08007 * 120.00391 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00177 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99889 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00231 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47065 * 179.97438 * 26 24 22 28 28 H 1.48499 * 109.47195 * 299.99453 * 26 24 22 29 29 H 1.48499 * 109.47468 * 59.99957 * 26 24 22 30 30 C 1.51441 * 107.04185 * 57.19421 * 19 18 17 31 31 H 1.08994 * 109.87205 * 54.18957 * 30 19 18 32 32 C 1.48237 * 125.78645 * 355.51423 * 12 10 9 33 33 H 1.09003 * 109.47599 * 300.00479 * 1 2 3 34 34 H 1.09001 * 109.47076 * 60.00222 * 1 2 3 35 35 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 36 36 H 1.08994 * 109.47439 * 239.99698 * 2 1 3 37 37 H 1.09001 * 109.47056 * 299.99790 * 3 2 1 38 38 H 1.08994 * 109.47303 * 59.99614 * 3 2 1 39 39 H 1.09000 * 109.47133 * 180.02562 * 3 2 1 40 40 H 1.07998 * 126.29036 * 180.24396 * 8 6 5 41 41 H 1.09006 * 110.62519 * 37.12983 * 13 12 10 42 42 H 1.08998 * 110.76201 * 274.17738 * 13 12 10 43 43 H 1.09006 * 109.94274 * 64.35567 * 16 14 13 44 44 H 1.09000 * 109.94864 * 303.11590 * 16 14 13 45 45 H 1.09007 * 109.03759 * 296.96744 * 17 16 14 46 46 H 1.09000 * 109.03948 * 178.10697 * 17 16 14 47 47 H 1.09004 * 109.03903 * 185.39875 * 18 17 16 48 48 H 1.09000 * 108.97753 * 66.48806 * 18 17 16 49 49 H 0.96996 * 120.00192 * 95.00582 * 21 19 18 50 50 H 0.96993 * 120.00379 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.17488 * 295.91983 * 32 12 10 52 52 H 1.09004 * 110.17187 * 57.64284 * 32 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7902 -0.3679 2.4658 6 7 2.4295 -1.2729 3.3205 7 1 2.4111 -1.2466 4.2900 8 6 3.0683 -2.1866 2.5725 9 6 2.8475 -1.8642 1.2484 10 6 3.3610 -2.5914 0.0733 11 8 3.1879 -2.1418 -1.0433 12 7 4.0221 -3.7544 0.2364 13 6 4.5101 -4.6375 -0.8554 14 6 5.6606 -5.4077 -0.2028 15 1 6.5474 -4.7786 -0.1262 16 6 6.0130 -6.7505 -0.8123 17 6 7.1187 -7.3657 0.0622 18 6 6.6759 -7.5064 1.5151 19 6 6.1736 -6.1698 2.0876 20 1 5.8101 -6.3144 3.1050 21 7 7.2574 -5.1841 2.0801 22 6 8.1478 -5.1378 3.1194 23 1 8.0514 -5.8281 3.9445 24 6 9.1745 -4.2035 3.1126 25 7 9.2918 -3.3619 2.1074 26 14 10.3896 -4.1407 4.5299 27 1 11.3819 -3.0635 4.2839 28 1 9.6615 -3.8642 5.7943 29 1 11.0919 -5.4446 4.6381 30 6 5.0433 -5.7014 1.1951 31 1 4.2892 -6.4838 1.1109 32 6 4.3860 -4.3699 1.5349 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 1.8934 -0.5138 -0.8899 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9564 0.8899 39 1 3.1300 1.4426 -0.0005 40 1 3.6502 -3.0192 2.9392 41 1 4.8725 -4.0449 -1.6955 42 1 3.7254 -5.3211 -1.1793 43 1 6.3776 -6.6126 -1.8302 44 1 5.1370 -7.3991 -0.8148 45 1 8.0016 -6.7278 0.0199 46 1 7.3743 -8.3506 -0.3284 47 1 7.5192 -7.8544 2.1117 48 1 5.8732 -8.2416 1.5714 49 1 7.3442 -4.5644 1.3391 50 1 10.0094 -2.7093 2.1024 51 1 5.0875 -3.7303 2.0707 52 1 3.4921 -4.5335 2.1370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992754354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:01 Heat of formation + Delta-G solvation = 46.314578 kcal Electronic energy + Delta-G solvation = -32089.888559 eV Core-core repulsion = 28090.768792 eV Total energy + Delta-G solvation = -3999.119767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.50334 -40.17203 -38.21258 -35.80754 -35.17426 -33.67423 -31.63381 -31.12044 -30.68137 -29.66732 -28.99437 -27.10117 -26.76976 -24.99700 -23.54421 -23.29998 -22.13251 -21.03830 -20.78833 -19.81510 -19.01077 -18.73866 -17.46059 -17.19891 -16.29434 -15.73942 -15.21142 -14.89202 -14.82102 -14.68718 -14.53386 -14.31888 -14.06106 -13.80995 -13.71287 -13.13166 -13.01874 -12.97838 -12.82215 -12.47708 -12.16005 -12.07842 -11.95280 -11.58794 -11.52602 -11.34253 -11.20787 -11.19483 -11.03050 -10.90559 -10.81327 -10.72737 -10.50647 -10.25962 -10.12952 -9.98142 -9.58247 -9.56009 -9.52380 -9.37191 -8.92705 -8.79835 -8.35689 -7.02453 -5.82810 -3.11943 1.57013 2.20705 2.67304 3.21944 3.37777 3.43259 3.44854 3.62466 4.41677 4.51448 4.56198 4.65858 4.88961 4.99406 5.04634 5.15103 5.22872 5.29778 5.40921 5.43200 5.48125 5.50245 5.60013 5.61323 5.66686 5.70190 5.73217 5.78468 5.86160 5.87411 5.92121 5.93360 5.98509 6.02831 6.04603 6.09253 6.25535 6.28283 6.30000 6.32384 6.44039 6.48352 6.54218 6.64917 6.73567 6.77496 6.91117 7.00497 7.08975 7.54081 7.63925 7.79475 8.35653 8.47845 9.47151 10.03980 10.38194 11.39151 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.003555 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.217302 B = 7875.212685 C = 9401.071671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.139 4.139 4 C 0.142 3.858 5 N -0.300 5.300 6 N -0.464 5.464 7 H 0.443 0.557 8 C 0.100 3.900 9 C -0.283 4.283 10 C 0.611 3.389 11 O -0.550 6.550 12 N -0.614 5.614 13 C 0.119 3.881 14 C -0.107 4.107 15 H 0.100 0.900 16 C -0.098 4.098 17 C -0.110 4.110 18 C -0.132 4.132 19 C 0.190 3.810 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.009 4.009 25 N -0.930 5.930 26 Si 0.903 3.097 27 H -0.292 1.292 28 H -0.287 1.287 29 H -0.287 1.287 30 C -0.107 4.107 31 H 0.078 0.922 32 C 0.103 3.897 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.198 0.802 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.088 0.912 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.267 -1.387 -2.172 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.026 4.026 5 N -0.121 5.121 6 N -0.168 5.168 7 H 0.288 0.712 8 C -0.053 4.053 9 C -0.298 4.298 10 C 0.401 3.599 11 O -0.429 6.429 12 N -0.348 5.348 13 C -0.002 4.002 14 C -0.126 4.126 15 H 0.118 0.882 16 C -0.136 4.136 17 C -0.148 4.148 18 C -0.173 4.173 19 C 0.079 3.921 20 H 0.069 0.931 21 N -0.362 5.362 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.578 5.578 26 Si 0.734 3.266 27 H -0.218 1.218 28 H -0.214 1.214 29 H -0.213 1.213 30 C -0.127 4.127 31 H 0.096 0.904 32 C -0.019 4.019 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.214 0.786 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.222 0.778 50 H 0.066 0.934 51 H 0.106 0.894 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.879 -0.226 -1.850 15.988 hybrid contribution 1.430 -0.508 0.864 1.746 sum -14.449 -0.734 -0.986 14.502 Atomic orbital electron populations 1.21781 0.94118 1.01810 1.01933 1.19961 0.95694 0.95819 0.93642 1.21771 1.01434 0.94663 1.01835 1.22350 0.94054 0.92790 0.93424 1.77053 1.20454 1.14225 1.00398 1.46142 1.39674 1.21418 1.09546 0.71245 1.24036 0.94988 0.94671 0.91557 1.20199 1.13403 1.03509 0.92645 1.16824 0.76833 0.78696 0.87532 1.90670 1.59733 1.66943 1.25601 1.48867 1.56442 1.21241 1.08206 1.21969 0.95718 0.92175 0.90373 1.22140 0.98261 0.97114 0.95109 0.88216 1.21281 0.98905 0.94775 0.98634 1.21386 0.98750 0.99745 0.94875 1.22164 1.00263 0.98808 0.96064 1.19870 0.87527 0.89247 0.95462 0.93089 1.42566 1.30396 1.38184 1.25073 1.19157 1.05432 1.13732 0.98970 0.91309 1.24701 0.99264 0.98633 0.97959 1.69635 1.34346 1.22464 1.31343 0.86343 0.81204 0.77076 0.81955 1.21798 1.21401 1.21344 1.22135 0.97798 0.95487 0.97271 0.90412 1.22060 0.98701 0.95506 0.85674 0.92444 0.92064 0.92826 0.86527 0.92080 0.92474 0.92497 0.78584 0.90419 0.91715 0.92160 0.92309 0.91045 0.93443 0.91993 0.94014 0.77808 0.93421 0.89364 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 2 C -0.03 -0.41 3.26 -91.77 -0.30 -0.71 16 3 C -0.14 -1.67 9.18 37.16 0.34 -1.33 16 4 C 0.14 2.11 5.77 -82.02 -0.47 1.64 16 5 N -0.30 -4.19 12.63 33.90 0.43 -3.77 16 6 N -0.46 -5.34 7.29 30.85 0.22 -5.12 16 7 H 0.44 3.49 8.96 -182.72 -1.64 1.85 16 8 C 0.10 1.26 10.52 -16.56 -0.17 1.08 16 9 C -0.28 -4.32 6.09 -105.06 -0.64 -4.96 16 10 C 0.61 10.34 7.85 -12.52 -0.10 10.24 16 11 O -0.55 -10.49 14.87 5.28 0.08 -10.41 16 12 N -0.61 -9.39 3.38 -172.13 -0.58 -9.97 16 13 C 0.12 1.71 6.58 -2.82 -0.02 1.69 16 14 C -0.11 -1.56 2.32 -89.90 -0.21 -1.77 16 15 H 0.10 1.82 5.91 -51.93 -0.31 1.52 16 16 C -0.10 -1.27 5.71 -27.01 -0.15 -1.43 16 17 C -0.11 -1.64 5.64 -26.55 -0.15 -1.79 16 18 C -0.13 -2.06 5.52 -26.53 -0.15 -2.21 16 19 C 0.19 3.18 2.93 -68.28 -0.20 2.98 16 20 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 21 N -0.72 -15.62 4.25 -53.77 -0.23 -15.85 16 22 C -0.24 -6.07 9.95 -15.06 -0.15 -6.22 16 23 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -26.60 13.06 55.49 0.72 -25.88 16 26 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 C -0.11 -1.50 2.13 -90.36 -0.19 -1.69 16 31 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 32 C 0.10 1.43 4.65 -3.43 -0.02 1.41 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.12 1.76 5.64 -51.93 -0.29 1.47 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.20 2.12 4.48 -52.49 -0.23 1.89 16 41 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 45 H 0.07 1.30 8.01 -51.92 -0.42 0.88 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.39 9.12 5.52 -40.82 -0.23 8.89 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 51 H 0.09 1.43 6.83 -51.93 -0.35 1.07 16 52 H 0.06 0.73 6.67 -51.93 -0.35 0.39 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -31.02 398.87 -10.38 -41.40 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -9.67 Total: 11.89 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.33 Total: -4.61 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.57 Total: -60.59 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.02 -10.38 -41.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992754354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.714 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds