Wall clock time and date at job start Wed Apr 1 2020 04:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46937 * 2 1 4 4 C 1.50702 * 109.46976 * 119.99260 * 2 1 3 5 5 N 1.30445 * 125.99052 * 300.00756 * 4 2 1 6 6 N 1.39938 * 108.89359 * 179.97438 * 5 4 2 7 7 H 0.96999 * 125.74721 * 179.97438 * 6 5 4 8 8 C 1.34259 * 108.49455 * 359.74415 * 6 5 4 9 9 C 1.38050 * 107.41548 * 0.39986 * 8 6 5 10 10 C 1.47428 * 126.41238 * 179.87075 * 9 8 6 11 11 O 1.21599 * 119.99909 * 186.13643 * 10 9 8 12 12 N 1.34774 * 120.00088 * 6.13801 * 10 9 8 13 13 C 1.48657 * 125.78475 * 175.51697 * 12 10 9 14 14 C 1.53055 * 103.44780 * 155.61872 * 13 12 10 15 15 H 1.09000 * 110.55643 * 283.26871 * 14 13 12 16 16 C 1.51621 * 116.68067 * 155.88577 * 14 13 12 17 17 C 1.53809 * 107.02319 * 183.73281 * 16 14 13 18 18 C 1.52533 * 111.70038 * 57.53606 * 17 16 14 19 19 C 1.53839 * 111.66325 * 305.96260 * 18 17 16 20 20 H 1.09001 * 109.93840 * 176.66326 * 19 18 17 21 21 N 1.46500 * 109.94028 * 297.80961 * 19 18 17 22 22 C 1.36933 * 119.99913 * 274.99938 * 21 19 18 23 23 H 1.08007 * 120.00391 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00177 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99889 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00231 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47065 * 179.97438 * 26 24 22 28 28 H 1.48499 * 109.47195 * 299.99453 * 26 24 22 29 29 H 1.48499 * 109.47468 * 59.99957 * 26 24 22 30 30 C 1.51441 * 107.04185 * 57.19421 * 19 18 17 31 31 H 1.08994 * 109.87205 * 54.18957 * 30 19 18 32 32 C 1.48237 * 125.78645 * 355.51423 * 12 10 9 33 33 H 1.09003 * 109.47599 * 300.00479 * 1 2 3 34 34 H 1.09001 * 109.47076 * 60.00222 * 1 2 3 35 35 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 36 36 H 1.08994 * 109.47439 * 239.99698 * 2 1 3 37 37 H 1.09001 * 109.47056 * 299.99790 * 3 2 1 38 38 H 1.08994 * 109.47303 * 59.99614 * 3 2 1 39 39 H 1.09000 * 109.47133 * 180.02562 * 3 2 1 40 40 H 1.07998 * 126.29036 * 180.24396 * 8 6 5 41 41 H 1.09006 * 110.62519 * 37.12983 * 13 12 10 42 42 H 1.08998 * 110.76201 * 274.17738 * 13 12 10 43 43 H 1.09006 * 109.94274 * 64.35567 * 16 14 13 44 44 H 1.09000 * 109.94864 * 303.11590 * 16 14 13 45 45 H 1.09007 * 109.03759 * 296.96744 * 17 16 14 46 46 H 1.09000 * 109.03948 * 178.10697 * 17 16 14 47 47 H 1.09004 * 109.03903 * 185.39875 * 18 17 16 48 48 H 1.09000 * 108.97753 * 66.48806 * 18 17 16 49 49 H 0.96996 * 120.00192 * 95.00582 * 21 19 18 50 50 H 0.96993 * 120.00379 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.17488 * 295.91983 * 32 12 10 52 52 H 1.09004 * 110.17187 * 57.64284 * 32 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7902 -0.3679 2.4658 6 7 2.4295 -1.2729 3.3205 7 1 2.4111 -1.2466 4.2900 8 6 3.0683 -2.1866 2.5725 9 6 2.8475 -1.8642 1.2484 10 6 3.3610 -2.5914 0.0733 11 8 3.1879 -2.1418 -1.0433 12 7 4.0221 -3.7544 0.2364 13 6 4.5101 -4.6375 -0.8554 14 6 5.6606 -5.4077 -0.2028 15 1 6.5474 -4.7786 -0.1262 16 6 6.0130 -6.7505 -0.8123 17 6 7.1187 -7.3657 0.0622 18 6 6.6759 -7.5064 1.5151 19 6 6.1736 -6.1698 2.0876 20 1 5.8101 -6.3144 3.1050 21 7 7.2574 -5.1841 2.0801 22 6 8.1478 -5.1378 3.1194 23 1 8.0514 -5.8281 3.9445 24 6 9.1745 -4.2035 3.1126 25 7 9.2918 -3.3619 2.1074 26 14 10.3896 -4.1407 4.5299 27 1 11.3819 -3.0635 4.2839 28 1 9.6615 -3.8642 5.7943 29 1 11.0919 -5.4446 4.6381 30 6 5.0433 -5.7014 1.1951 31 1 4.2892 -6.4838 1.1109 32 6 4.3860 -4.3699 1.5349 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 1.8934 -0.5138 -0.8899 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9564 0.8899 39 1 3.1300 1.4426 -0.0005 40 1 3.6502 -3.0192 2.9392 41 1 4.8725 -4.0449 -1.6955 42 1 3.7254 -5.3211 -1.1793 43 1 6.3776 -6.6126 -1.8302 44 1 5.1370 -7.3991 -0.8148 45 1 8.0016 -6.7278 0.0199 46 1 7.3743 -8.3506 -0.3284 47 1 7.5192 -7.8544 2.1117 48 1 5.8732 -8.2416 1.5714 49 1 7.3442 -4.5644 1.3391 50 1 10.0094 -2.7093 2.1024 51 1 5.0875 -3.7303 2.0707 52 1 3.4921 -4.5335 2.1370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992754354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:00 Heat of formation + Delta-G solvation = 27.391070 kcal Electronic energy + Delta-G solvation = -32090.709144 eV Core-core repulsion = 28090.768792 eV Total energy + Delta-G solvation = -3999.940352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.58027 -41.37522 -39.50034 -36.98255 -36.35799 -35.27984 -33.18317 -32.34541 -31.72476 -30.89927 -30.46910 -28.02339 -28.02009 -26.35295 -25.24406 -24.34366 -23.29443 -22.21973 -21.98152 -20.95627 -20.15686 -19.99413 -19.01660 -18.55523 -17.54395 -16.95343 -16.53472 -16.37766 -15.93821 -15.83967 -15.68307 -15.54385 -15.47300 -15.15778 -15.00470 -14.50687 -14.21230 -14.13709 -13.93727 -13.71904 -13.29397 -13.24155 -13.14497 -13.03506 -12.77692 -12.67475 -12.54946 -12.45340 -12.31962 -12.16371 -12.09445 -12.02982 -11.85336 -11.80975 -11.58240 -11.30303 -11.12294 -10.85976 -10.71969 -10.55727 -10.54223 -9.93831 -9.54079 -8.87949 -7.86648 -5.11830 0.50069 1.07572 1.49017 1.50311 1.56062 1.70944 2.07866 2.40575 2.60913 3.31347 3.43113 3.47939 3.63424 3.76023 3.84049 4.01290 4.10474 4.12812 4.26171 4.26320 4.30001 4.34881 4.42486 4.46989 4.54722 4.59491 4.62138 4.68136 4.75107 4.78502 4.79936 4.86535 4.91841 4.94266 4.95951 5.08607 5.10606 5.14147 5.18556 5.24807 5.34198 5.34537 5.41780 5.48629 5.50566 5.53389 5.60063 5.66086 5.75877 6.21616 6.35629 6.46749 6.60416 7.22514 7.43292 8.24011 8.44011 9.36346 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.003555 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.217302 B = 7875.212685 C = 9401.071671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.035 4.035 3 C -0.134 4.134 4 C 0.131 3.869 5 N -0.310 5.310 6 N -0.448 5.448 7 H 0.460 0.540 8 C 0.117 3.883 9 C -0.315 4.315 10 C 0.603 3.397 11 O -0.583 6.583 12 N -0.615 5.615 13 C 0.121 3.879 14 C -0.101 4.101 15 H 0.054 0.946 16 C -0.089 4.089 17 C -0.107 4.107 18 C -0.127 4.127 19 C 0.182 3.818 20 H 0.058 0.942 21 N -0.727 5.727 22 C -0.223 4.223 23 H 0.077 0.923 24 C -0.074 4.074 25 N -0.970 5.970 26 Si 0.959 3.041 27 H -0.306 1.306 28 H -0.278 1.278 29 H -0.283 1.283 30 C -0.097 4.097 31 H 0.115 0.885 32 C 0.105 3.895 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.216 0.784 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.026 0.974 46 H 0.067 0.933 47 H 0.037 0.963 48 H 0.079 0.921 49 H 0.374 0.626 50 H 0.245 0.755 51 H 0.062 0.938 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 -3.397 -1.102 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.055 4.055 3 C -0.191 4.191 4 C -0.037 4.037 5 N -0.132 5.132 6 N -0.154 5.154 7 H 0.308 0.692 8 C -0.037 4.037 9 C -0.329 4.329 10 C 0.394 3.606 11 O -0.465 6.465 12 N -0.348 5.348 13 C 0.000 4.000 14 C -0.120 4.120 15 H 0.073 0.927 16 C -0.127 4.127 17 C -0.145 4.145 18 C -0.167 4.167 19 C 0.073 3.927 20 H 0.076 0.924 21 N -0.369 5.369 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.266 4.266 25 N -0.622 5.622 26 Si 0.790 3.210 27 H -0.233 1.233 28 H -0.204 1.204 29 H -0.209 1.209 30 C -0.117 4.117 31 H 0.133 0.867 32 C -0.017 4.017 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.232 0.768 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.208 0.792 50 H 0.053 0.947 51 H 0.080 0.920 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.265 -2.295 -0.722 18.423 hybrid contribution 2.142 0.040 0.556 2.214 sum -16.123 -2.254 -0.166 16.281 Atomic orbital electron populations 1.21719 0.92314 1.01806 1.02952 1.19979 0.97190 0.95970 0.92376 1.21732 1.00171 0.94260 1.02985 1.22601 0.94148 0.92906 0.94081 1.77005 1.21042 1.14880 1.00317 1.46184 1.38476 1.20412 1.10324 0.69223 1.24208 0.94036 0.94768 0.90730 1.20274 1.14988 1.04470 0.93206 1.17132 0.76814 0.78971 0.87662 1.90644 1.61204 1.67767 1.26860 1.48928 1.55773 1.21032 1.09023 1.22014 0.96241 0.92109 0.89666 1.21973 0.96579 0.97336 0.96154 0.92729 1.21254 0.99332 0.93887 0.98212 1.21342 0.97822 0.99973 0.95321 1.22067 1.00537 0.98480 0.95660 1.20140 0.86993 0.88816 0.96716 0.92397 1.42753 1.31202 1.39116 1.23815 1.19559 1.04779 1.12015 0.99224 0.90510 1.25347 1.01598 0.99492 1.00150 1.69805 1.35049 1.23814 1.33487 0.85425 0.79189 0.76472 0.79955 1.23340 1.20399 1.20936 1.22095 0.97447 0.96450 0.95660 0.86673 1.22090 0.99560 0.94780 0.85245 0.92165 0.90229 0.93314 0.88675 0.90087 0.92108 0.94378 0.76751 0.92271 0.88957 0.91655 0.88974 0.95487 0.91471 0.94421 0.90216 0.79166 0.94657 0.92025 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.18 71.98 0.66 -2.10 16 2 C -0.03 -0.93 3.26 -11.54 -0.04 -0.97 16 3 C -0.13 -3.20 9.18 71.98 0.66 -2.54 16 4 C 0.13 3.85 5.77 43.52 0.25 4.10 16 5 N -0.31 -8.38 12.63 -46.67 -0.59 -8.97 16 6 N -0.45 -9.56 7.29 -56.31 -0.41 -9.97 16 7 H 0.46 6.22 8.96 -213.43 -1.91 4.31 16 8 C 0.12 2.76 10.52 84.28 0.89 3.65 16 9 C -0.31 -9.53 6.09 -20.15 -0.12 -9.65 16 10 C 0.60 20.55 7.85 86.66 0.68 21.23 16 11 O -0.58 -22.95 14.87 -4.03 -0.06 -23.01 16 12 N -0.62 -18.33 3.38 -816.77 -2.76 -21.09 16 13 C 0.12 3.34 6.58 85.98 0.57 3.90 16 14 C -0.10 -2.84 2.32 -10.33 -0.02 -2.86 16 15 H 0.05 2.07 5.91 -2.39 -0.01 2.06 16 16 C -0.09 -2.08 5.71 30.41 0.17 -1.91 16 17 C -0.11 -3.02 5.64 30.71 0.17 -2.85 16 18 C -0.13 -3.63 5.52 30.72 0.17 -3.46 16 19 C 0.18 5.74 2.93 44.76 0.13 5.87 16 20 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 21 N -0.73 -31.79 4.25 -324.02 -1.38 -33.17 16 22 C -0.22 -11.24 9.95 84.03 0.84 -10.41 16 23 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 25 N -0.97 -57.72 13.06 21.65 0.28 -57.44 16 26 Si 0.96 44.59 29.55 68.60 2.03 46.62 16 27 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 29 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 30 C -0.10 -2.44 2.13 -10.62 -0.02 -2.46 16 31 H 0.12 2.16 7.92 -2.39 -0.02 2.14 16 32 C 0.10 2.71 4.65 85.82 0.40 3.11 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 2.98 5.64 -2.39 -0.01 2.97 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.22 4.17 4.48 -2.91 -0.01 4.16 16 41 H 0.06 1.84 8.03 -2.38 -0.02 1.82 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 45 H 0.03 0.99 8.01 -2.38 -0.02 0.97 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.37 18.33 5.52 -92.71 -0.51 17.82 16 50 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 51 H 0.06 1.95 6.83 -2.39 -0.02 1.94 16 52 H 0.10 1.89 6.67 -2.38 -0.02 1.87 16 Total: -1.00 -70.84 398.87 1.48 -69.36 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -1.48 Total: 38.56 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.85 Total: -0.90 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -4.85 Total: -130.63 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -70.84 1.48 -69.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992754354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.747 kcal (2) G-P(sol) polarization free energy of solvation -70.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds