Wall clock time and date at job start Wed Apr 1 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47380 * 120.00360 * 2 1 3 5 5 C 1.35363 * 126.38568 * 145.00315 * 4 2 1 6 6 C 1.41499 * 105.50227 * 179.97438 * 5 4 2 7 7 C 1.47716 * 126.52025 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99644 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.47377 * 125.74585 * 359.97438 * 9 7 6 11 11 C 1.55439 * 106.74158 * 181.07958 * 10 9 7 12 12 H 1.09002 * 112.50354 * 213.26494 * 11 10 9 13 13 C 1.52992 * 106.44591 * 89.98996 * 11 10 9 14 14 C 1.52602 * 110.97303 * 197.06495 * 13 11 10 15 15 C 1.53214 * 108.50716 * 62.31895 * 14 13 11 16 16 C 1.52815 * 108.12723 * 296.11586 * 15 14 13 17 17 H 1.09000 * 108.98564 * 298.62113 * 16 15 14 18 18 N 1.46494 * 109.04420 * 179.70157 * 16 15 14 19 19 C 1.36941 * 119.99762 * 82.84025 * 18 16 15 20 20 H 1.07996 * 120.00272 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99729 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00353 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99691 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47241 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46954 * 120.00223 * 23 21 19 26 26 H 1.48498 * 109.47060 * 239.99776 * 23 21 19 27 27 C 1.50855 * 111.66451 * 59.14051 * 16 15 14 28 28 H 1.09007 * 109.35320 * 185.13052 * 27 16 15 29 29 C 1.47927 * 125.74542 * 180.02562 * 9 7 6 30 30 N 1.31808 * 106.96514 * 0.25537 * 6 5 4 31 31 N 1.28469 * 110.07360 * 359.56532 * 30 6 5 32 32 H 0.96995 * 124.89129 * 180.19904 * 31 30 6 33 33 H 1.08997 * 109.46738 * 299.99338 * 1 2 3 34 34 H 1.08995 * 109.47081 * 59.99758 * 1 2 3 35 35 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 36 36 H 1.09009 * 109.47083 * 240.00613 * 2 1 3 37 37 H 1.09003 * 109.46431 * 60.00666 * 3 2 1 38 38 H 1.09000 * 109.46552 * 180.02562 * 3 2 1 39 39 H 1.08990 * 109.47193 * 300.00460 * 3 2 1 40 40 H 1.08000 * 127.25118 * 359.97209 * 5 4 2 41 41 H 1.09000 * 110.00335 * 61.75965 * 10 9 7 42 42 H 1.08996 * 110.04192 * 300.42642 * 10 9 7 43 43 H 1.09002 * 109.17087 * 317.43596 * 13 11 10 44 44 H 1.09000 * 109.16884 * 76.69726 * 13 11 10 45 45 H 1.08998 * 109.63743 * 181.95457 * 14 13 11 46 46 H 1.09004 * 109.63596 * 302.57603 * 14 13 11 47 47 H 1.09004 * 109.73839 * 176.46390 * 15 14 13 48 48 H 1.08998 * 109.77820 * 55.79483 * 15 14 13 49 49 H 0.97003 * 120.00478 * 262.84288 * 18 16 15 50 50 H 0.96995 * 120.00380 * 179.97438 * 22 21 19 51 51 H 1.09008 * 110.57079 * 323.03396 * 29 9 7 52 52 H 1.09005 * 110.57141 * 85.75409 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1417 -1.4815 1.3157 6 6 3.1932 -1.9226 2.6592 7 6 4.2226 -2.7961 3.2588 8 8 5.1415 -3.2085 2.5779 9 7 4.1431 -3.1359 4.5606 10 6 3.0894 -2.7099 5.4988 11 6 3.4421 -3.3298 6.8798 12 1 2.5561 -3.5908 7.4586 13 6 4.3232 -2.3079 7.6010 14 6 5.0693 -2.9546 8.7646 15 6 5.9942 -4.0407 8.2058 16 6 5.1250 -5.1220 7.5650 17 1 4.4805 -5.5575 8.3286 18 7 5.9909 -6.1688 7.0169 19 6 6.4713 -7.1573 7.8339 20 1 6.2114 -7.1654 8.8821 21 6 7.2922 -8.1490 7.3146 22 7 7.6093 -8.1389 6.0373 23 14 7.9469 -9.4978 8.4289 24 1 7.4471 -9.2844 9.8108 25 1 7.4820 -10.8183 7.9334 26 1 9.4315 -9.4635 8.4281 27 6 4.2671 -4.5630 6.4572 28 1 3.5994 -5.3420 6.0893 29 6 5.0993 -3.9984 5.2885 30 7 2.1448 -1.4109 3.2725 31 7 1.4602 -0.6961 2.4534 32 1 0.6472 -0.2181 2.6799 33 1 -0.3633 0.5137 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8934 -0.5138 -0.8901 37 1 1.6767 1.9563 0.8901 38 1 3.1300 1.4425 -0.0005 39 1 1.6766 1.9564 -0.8899 40 1 3.8404 -1.7115 0.5249 41 1 2.1197 -3.0767 5.1621 42 1 3.0715 -1.6225 5.5717 43 1 5.0463 -1.8979 6.8959 44 1 3.6972 -1.5009 7.9815 45 1 5.6623 -2.2014 9.2833 46 1 4.3541 -3.4017 9.4551 47 1 6.5839 -4.4737 9.0139 48 1 6.6579 -3.6100 7.4560 49 1 6.2241 -6.1618 6.0754 50 1 8.1832 -8.8316 5.6746 51 1 5.4536 -4.8047 4.6462 52 1 5.9382 -3.4106 5.6613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992808400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:18 Heat of formation + Delta-G solvation = 38.477455 kcal Electronic energy + Delta-G solvation = -31138.593093 eV Core-core repulsion = 27139.133483 eV Total energy + Delta-G solvation = -3999.459610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.91568 -40.32866 -38.28658 -36.13434 -35.33925 -33.76014 -32.10312 -31.47067 -30.65741 -29.83028 -28.76175 -27.71671 -26.56825 -25.17552 -23.69579 -23.19097 -22.30920 -21.61599 -21.16018 -20.61148 -18.81949 -18.31253 -17.85902 -17.08294 -16.50022 -16.07971 -15.79379 -15.26851 -15.18922 -14.74283 -14.49448 -14.27184 -13.88981 -13.84488 -13.69295 -13.51198 -13.46563 -13.19838 -12.79863 -12.77160 -12.56641 -12.40533 -11.88653 -11.85116 -11.75395 -11.63830 -11.55085 -11.26182 -10.99826 -10.96096 -10.84200 -10.78990 -10.62779 -10.14370 -10.09139 -9.94237 -9.84676 -9.60411 -9.52681 -9.45685 -9.17532 -8.81608 -8.34151 -6.89302 -5.69653 -2.98876 1.51148 1.94308 2.59993 3.16543 3.47445 3.51602 3.52608 3.55259 4.07737 4.24890 4.36571 4.55646 4.59843 4.67372 4.84789 4.86737 4.97354 5.03173 5.09623 5.19331 5.26194 5.40624 5.42168 5.47992 5.49982 5.54742 5.56472 5.61034 5.67430 5.72121 5.77769 5.79500 5.87506 5.90744 5.94017 6.03661 6.11611 6.15057 6.20323 6.33289 6.37729 6.44659 6.51333 6.59559 6.67513 6.76699 6.82583 6.98133 7.18476 7.63290 7.75445 7.76622 8.35250 8.48281 9.59388 10.16939 10.51316 11.52814 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.002372 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.222748 B =11803.213557 C =12786.298025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.026 4.026 3 C -0.146 4.146 4 C 0.019 3.981 5 C -0.175 4.175 6 C 0.000 4.000 7 C 0.610 3.390 8 O -0.531 6.531 9 N -0.605 5.605 10 C 0.114 3.886 11 C -0.093 4.093 12 H 0.095 0.905 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.136 4.136 16 C 0.191 3.809 17 H 0.049 0.951 18 N -0.727 5.727 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.094 4.094 28 H 0.079 0.921 29 C 0.117 3.883 30 N -0.254 5.254 31 N -0.382 5.382 32 H 0.441 0.559 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.161 0.839 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.086 0.914 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.408 21.885 -8.176 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.106 4.106 5 C -0.203 4.203 6 C -0.161 4.161 7 C 0.396 3.604 8 O -0.406 6.406 9 N -0.338 5.338 10 C -0.009 4.009 11 C -0.112 4.112 12 H 0.113 0.887 13 C -0.148 4.148 14 C -0.156 4.156 15 C -0.176 4.176 16 C 0.081 3.919 17 H 0.067 0.933 18 N -0.368 5.368 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.114 4.114 28 H 0.097 0.903 29 C -0.004 4.004 30 N -0.090 5.090 31 N -0.096 5.096 32 H 0.285 0.715 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.179 0.821 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.104 0.896 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.335 21.540 -7.464 28.639 hybrid contribution 0.397 -0.527 -0.355 0.749 sum -16.938 21.013 -7.819 28.099 Atomic orbital electron populations 1.21901 0.94231 1.02553 1.02426 1.19771 0.95805 0.95824 0.93239 1.21875 1.02044 0.94369 1.02117 1.21334 0.96694 1.03664 0.88934 1.21516 0.99499 1.02299 0.97024 1.21932 0.96400 1.04023 0.93711 1.16509 0.83771 0.79735 0.80402 1.90832 1.34133 1.54959 1.60656 1.48519 1.27542 1.49473 1.08248 1.22426 0.90637 0.99313 0.88525 1.22361 0.98847 0.95479 0.94528 0.88693 1.21547 0.98390 0.97068 0.97786 1.21516 0.98655 0.98315 0.97100 1.22294 0.98415 0.96357 1.00557 1.19598 0.90862 0.88757 0.92712 0.93335 1.42533 1.57140 1.27314 1.09799 1.19260 1.23288 1.02175 0.92097 0.91145 1.24746 1.00906 0.99349 0.95999 1.69671 1.40964 1.35753 1.11489 0.86159 0.78470 0.82167 0.79634 1.20624 1.21988 1.21966 1.21882 0.97369 0.96156 0.95978 0.90295 1.22336 0.91662 0.93586 0.92863 1.73698 1.06016 1.08805 1.20483 1.43304 1.22696 1.37183 1.06420 0.71457 0.92910 0.91245 0.91935 0.88320 0.92730 0.91780 0.91654 0.82090 0.91468 0.91062 0.92041 0.92576 0.92804 0.92217 0.91816 0.92445 0.78160 0.93560 0.89612 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 8.95 37.16 0.33 -0.25 16 2 C -0.03 -0.14 3.32 -91.77 -0.30 -0.44 16 3 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 4 C 0.02 0.17 5.92 -82.21 -0.49 -0.32 16 5 C -0.18 -2.09 10.73 -39.37 -0.42 -2.52 16 6 C 0.00 0.01 6.98 -82.76 -0.58 -0.57 16 7 C 0.61 10.66 7.86 -12.39 -0.10 10.56 16 8 O -0.53 -11.10 17.20 5.30 0.09 -11.01 16 9 N -0.60 -9.80 3.34 -170.73 -0.57 -10.37 16 10 C 0.11 1.49 4.83 -2.27 -0.01 1.48 16 11 C -0.09 -1.20 3.64 -88.67 -0.32 -1.52 16 12 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.11 -1.37 4.60 -26.94 -0.12 -1.50 16 14 C -0.12 -1.60 5.92 -26.82 -0.16 -1.75 16 15 C -0.14 -2.39 5.29 -26.72 -0.14 -2.53 16 16 C 0.19 3.69 2.44 -69.11 -0.17 3.52 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.73 -18.07 5.03 -54.57 -0.27 -18.34 16 19 C -0.24 -6.55 9.89 -15.06 -0.15 -6.70 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 23 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 C -0.09 -1.57 2.58 -90.42 -0.23 -1.80 16 28 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 29 C 0.12 2.09 5.11 -2.64 -0.01 2.08 16 30 N -0.25 -3.00 9.78 33.42 0.33 -2.67 16 31 N -0.38 -3.20 6.64 33.50 0.22 -2.97 16 32 H 0.44 2.16 8.14 -190.44 -1.55 0.61 16 33 H 0.05 0.15 7.43 -51.93 -0.39 -0.24 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.10 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.07 0.85 7.78 -51.93 -0.40 0.45 16 42 H 0.07 0.87 7.31 -51.93 -0.38 0.49 16 43 H 0.06 0.84 6.93 -51.93 -0.36 0.48 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.06 1.06 6.70 -51.93 -0.35 0.71 16 49 H 0.38 10.30 6.52 -40.82 -0.27 10.03 16 50 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.09 1.79 7.40 -51.92 -0.38 1.41 16 52 H 0.07 1.37 5.79 -51.93 -0.30 1.07 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -33.97 402.63 -10.91 -44.88 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -9.84 Total: 7.80 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.63 Total: -3.12 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.43 Total: -62.27 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.97 -10.91 -44.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992808400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.360 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds