Wall clock time and date at job start Wed Apr 1 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47380 * 120.00360 * 2 1 3 5 5 C 1.35363 * 126.38568 * 145.00315 * 4 2 1 6 6 C 1.41499 * 105.50227 * 179.97438 * 5 4 2 7 7 C 1.47716 * 126.52025 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99644 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.47377 * 125.74585 * 359.97438 * 9 7 6 11 11 C 1.55439 * 106.74158 * 181.07958 * 10 9 7 12 12 H 1.09002 * 112.50354 * 213.26494 * 11 10 9 13 13 C 1.52992 * 106.44591 * 89.98996 * 11 10 9 14 14 C 1.52602 * 110.97303 * 197.06495 * 13 11 10 15 15 C 1.53214 * 108.50716 * 62.31895 * 14 13 11 16 16 C 1.52815 * 108.12723 * 296.11586 * 15 14 13 17 17 H 1.09000 * 108.98564 * 298.62113 * 16 15 14 18 18 N 1.46494 * 109.04420 * 179.70157 * 16 15 14 19 19 C 1.36941 * 119.99762 * 82.84025 * 18 16 15 20 20 H 1.07996 * 120.00272 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99729 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00353 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99691 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47241 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46954 * 120.00223 * 23 21 19 26 26 H 1.48498 * 109.47060 * 239.99776 * 23 21 19 27 27 C 1.50855 * 111.66451 * 59.14051 * 16 15 14 28 28 H 1.09007 * 109.35320 * 185.13052 * 27 16 15 29 29 C 1.47927 * 125.74542 * 180.02562 * 9 7 6 30 30 N 1.31808 * 106.96514 * 0.25537 * 6 5 4 31 31 N 1.28469 * 110.07360 * 359.56532 * 30 6 5 32 32 H 0.96995 * 124.89129 * 180.19904 * 31 30 6 33 33 H 1.08997 * 109.46738 * 299.99338 * 1 2 3 34 34 H 1.08995 * 109.47081 * 59.99758 * 1 2 3 35 35 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 36 36 H 1.09009 * 109.47083 * 240.00613 * 2 1 3 37 37 H 1.09003 * 109.46431 * 60.00666 * 3 2 1 38 38 H 1.09000 * 109.46552 * 180.02562 * 3 2 1 39 39 H 1.08990 * 109.47193 * 300.00460 * 3 2 1 40 40 H 1.08000 * 127.25118 * 359.97209 * 5 4 2 41 41 H 1.09000 * 110.00335 * 61.75965 * 10 9 7 42 42 H 1.08996 * 110.04192 * 300.42642 * 10 9 7 43 43 H 1.09002 * 109.17087 * 317.43596 * 13 11 10 44 44 H 1.09000 * 109.16884 * 76.69726 * 13 11 10 45 45 H 1.08998 * 109.63743 * 181.95457 * 14 13 11 46 46 H 1.09004 * 109.63596 * 302.57603 * 14 13 11 47 47 H 1.09004 * 109.73839 * 176.46390 * 15 14 13 48 48 H 1.08998 * 109.77820 * 55.79483 * 15 14 13 49 49 H 0.97003 * 120.00478 * 262.84288 * 18 16 15 50 50 H 0.96995 * 120.00380 * 179.97438 * 22 21 19 51 51 H 1.09008 * 110.57079 * 323.03396 * 29 9 7 52 52 H 1.09005 * 110.57141 * 85.75409 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1417 -1.4815 1.3157 6 6 3.1932 -1.9226 2.6592 7 6 4.2226 -2.7961 3.2588 8 8 5.1415 -3.2085 2.5779 9 7 4.1431 -3.1359 4.5606 10 6 3.0894 -2.7099 5.4988 11 6 3.4421 -3.3298 6.8798 12 1 2.5561 -3.5908 7.4586 13 6 4.3232 -2.3079 7.6010 14 6 5.0693 -2.9546 8.7646 15 6 5.9942 -4.0407 8.2058 16 6 5.1250 -5.1220 7.5650 17 1 4.4805 -5.5575 8.3286 18 7 5.9909 -6.1688 7.0169 19 6 6.4713 -7.1573 7.8339 20 1 6.2114 -7.1654 8.8821 21 6 7.2922 -8.1490 7.3146 22 7 7.6093 -8.1389 6.0373 23 14 7.9469 -9.4978 8.4289 24 1 7.4471 -9.2844 9.8108 25 1 7.4820 -10.8183 7.9334 26 1 9.4315 -9.4635 8.4281 27 6 4.2671 -4.5630 6.4572 28 1 3.5994 -5.3420 6.0893 29 6 5.0993 -3.9984 5.2885 30 7 2.1448 -1.4109 3.2725 31 7 1.4602 -0.6961 2.4534 32 1 0.6472 -0.2181 2.6799 33 1 -0.3633 0.5137 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8934 -0.5138 -0.8901 37 1 1.6767 1.9563 0.8901 38 1 3.1300 1.4425 -0.0005 39 1 1.6766 1.9564 -0.8899 40 1 3.8404 -1.7115 0.5249 41 1 2.1197 -3.0767 5.1621 42 1 3.0715 -1.6225 5.5717 43 1 5.0463 -1.8979 6.8959 44 1 3.6972 -1.5009 7.9815 45 1 5.6623 -2.2014 9.2833 46 1 4.3541 -3.4017 9.4551 47 1 6.5839 -4.4737 9.0139 48 1 6.6579 -3.6100 7.4560 49 1 6.2241 -6.1618 6.0754 50 1 8.1832 -8.8316 5.6746 51 1 5.4536 -4.8047 4.6462 52 1 5.9382 -3.4106 5.6613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992808400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:17 Heat of formation + Delta-G solvation = 16.226637 kcal Electronic energy + Delta-G solvation = -31139.557961 eV Core-core repulsion = 27139.133483 eV Total energy + Delta-G solvation = -4000.424478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.78641 -41.64987 -39.68348 -36.95291 -36.60825 -35.39049 -33.31855 -33.05359 -31.80827 -30.81893 -30.35043 -28.09430 -27.94303 -26.45972 -25.54376 -24.15609 -23.27508 -22.87158 -22.04456 -21.83958 -20.08098 -19.76036 -18.95042 -18.63871 -17.66217 -17.32364 -16.89065 -16.64021 -16.40356 -15.87345 -15.69958 -15.34667 -15.29245 -15.02781 -14.91196 -14.74711 -14.54227 -14.20854 -13.97547 -13.89131 -13.77789 -13.43115 -13.04165 -13.01729 -12.82715 -12.76092 -12.52412 -12.35587 -12.28120 -12.15008 -12.13628 -12.06805 -11.94787 -11.88640 -11.66002 -11.31614 -11.26866 -11.16993 -10.97133 -10.74427 -10.48070 -9.98417 -9.68462 -8.97767 -7.91299 -5.20185 0.46009 1.07260 1.46480 1.47695 1.57647 1.69786 2.09188 2.27498 2.57004 3.20299 3.41088 3.44876 3.54877 3.56045 3.78746 3.84827 4.04539 4.18564 4.21689 4.24389 4.28438 4.36039 4.40676 4.42605 4.50161 4.57631 4.62331 4.67576 4.69007 4.78287 4.80473 4.82394 4.87279 4.93953 4.96945 5.01979 5.10444 5.14894 5.19272 5.20370 5.29473 5.30614 5.36437 5.37738 5.38586 5.45213 5.54826 5.58226 5.71835 6.07059 6.30311 6.42969 6.76919 7.04460 7.35455 8.12705 8.34500 9.32699 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.002372 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.222748 B =11803.213557 C =12786.298025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.144 4.144 4 C 0.046 3.954 5 C -0.203 4.203 6 C -0.029 4.029 7 C 0.601 3.399 8 O -0.583 6.583 9 N -0.604 5.604 10 C 0.118 3.882 11 C -0.079 4.079 12 H 0.127 0.873 13 C -0.107 4.107 14 C -0.108 4.108 15 C -0.130 4.130 16 C 0.188 3.812 17 H 0.052 0.948 18 N -0.742 5.742 19 C -0.230 4.230 20 H 0.080 0.920 21 C -0.083 4.083 22 N -0.974 5.974 23 Si 0.972 3.028 24 H -0.262 1.262 25 H -0.296 1.296 26 H -0.297 1.297 27 C -0.087 4.087 28 H 0.065 0.935 29 C 0.124 3.876 30 N -0.251 5.251 31 N -0.359 5.359 32 H 0.460 0.540 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.155 0.845 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.369 0.631 50 H 0.248 0.752 51 H 0.041 0.959 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.931 24.788 -6.684 33.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.081 4.081 5 C -0.231 4.231 6 C -0.188 4.188 7 C 0.389 3.611 8 O -0.462 6.462 9 N -0.336 5.336 10 C -0.004 4.004 11 C -0.098 4.098 12 H 0.145 0.855 13 C -0.144 4.144 14 C -0.146 4.146 15 C -0.170 4.170 16 C 0.080 3.920 17 H 0.070 0.930 18 N -0.382 5.382 19 C -0.362 4.362 20 H 0.098 0.902 21 C -0.275 4.275 22 N -0.626 5.626 23 Si 0.801 3.199 24 H -0.186 1.186 25 H -0.224 1.224 26 H -0.225 1.225 27 C -0.107 4.107 28 H 0.083 0.917 29 C 0.001 3.999 30 N -0.088 5.088 31 N -0.076 5.076 32 H 0.309 0.691 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.173 0.827 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.201 0.799 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.934 24.500 -5.896 32.761 hybrid contribution 1.410 -1.325 -0.858 2.116 sum -19.525 23.175 -6.754 31.047 Atomic orbital electron populations 1.21914 0.92465 1.02613 1.03970 1.19922 0.97160 0.95893 0.91475 1.21869 1.01209 0.93818 1.03324 1.21680 0.94921 1.01673 0.89776 1.21640 1.01186 1.03956 0.96309 1.21498 0.97059 1.05510 0.94773 1.17070 0.83959 0.79630 0.80409 1.90784 1.36412 1.57075 1.61899 1.48598 1.27774 1.48778 1.08481 1.22597 0.89829 1.00343 0.87602 1.22431 0.99258 0.93141 0.94945 0.85467 1.21547 0.98353 0.97600 0.96901 1.21455 0.98231 0.97164 0.97704 1.22132 0.98509 0.97038 0.99315 1.19843 0.90614 0.88066 0.93468 0.93026 1.42817 1.57929 1.28421 1.09018 1.19683 1.21804 1.02043 0.92640 0.90200 1.25591 1.02287 1.02236 0.97358 1.69857 1.42472 1.36725 1.13525 0.85084 0.77235 0.78889 0.78655 1.18578 1.22395 1.22486 1.21713 0.96850 0.97576 0.94537 0.91693 1.22051 0.92369 0.92609 0.92825 1.73582 1.05390 1.08965 1.20859 1.43378 1.22581 1.35686 1.05954 0.69112 0.91452 0.89761 0.92600 0.87994 0.92169 0.93158 0.89851 0.82714 0.90464 0.89250 0.93585 0.88787 0.91095 0.90583 0.93780 0.94203 0.79913 0.94308 0.94049 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.95 71.98 0.64 0.01 16 2 C -0.02 -0.20 3.32 -11.54 -0.04 -0.24 16 3 C -0.14 -0.97 9.18 71.98 0.66 -0.31 16 4 C 0.05 0.71 5.92 41.40 0.25 0.96 16 5 C -0.20 -4.89 10.73 22.41 0.24 -4.65 16 6 C -0.03 -0.84 6.98 42.46 0.30 -0.55 16 7 C 0.60 22.23 7.86 86.75 0.68 22.91 16 8 O -0.58 -26.60 17.20 -3.96 -0.07 -26.67 16 9 N -0.60 -20.23 3.34 -812.33 -2.72 -22.94 16 10 C 0.12 2.85 4.83 87.05 0.42 3.27 16 11 C -0.08 -1.82 3.64 -9.53 -0.03 -1.86 16 12 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.11 -2.29 4.60 30.46 0.14 -2.15 16 14 C -0.11 -2.60 5.92 30.53 0.18 -2.42 16 15 C -0.13 -4.55 5.29 30.60 0.16 -4.39 16 16 C 0.19 7.36 2.44 44.23 0.11 7.46 16 17 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 18 N -0.74 -38.53 5.03 -326.57 -1.64 -40.17 16 19 C -0.23 -12.99 9.89 84.03 0.83 -12.16 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 22 N -0.97 -62.87 13.06 21.65 0.28 -62.59 16 23 Si 0.97 47.74 29.55 68.60 2.03 49.77 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 26 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 27 C -0.09 -2.93 2.58 -10.66 -0.03 -2.95 16 28 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 29 C 0.12 4.75 5.11 86.51 0.44 5.19 16 30 N -0.25 -5.45 9.78 -48.17 -0.47 -5.92 16 31 N -0.36 -5.03 6.64 -47.93 -0.32 -5.34 16 32 H 0.46 2.70 8.14 -220.00 -1.79 0.91 16 33 H 0.07 0.09 7.43 -2.39 -0.02 0.08 16 34 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 37 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 41 H 0.08 1.76 7.78 -2.39 -0.02 1.74 16 42 H 0.09 1.90 7.31 -2.39 -0.02 1.88 16 43 H 0.05 1.16 6.93 -2.39 -0.02 1.14 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.04 1.52 6.70 -2.39 -0.02 1.50 16 49 H 0.37 21.22 6.52 -92.71 -0.60 20.61 16 50 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 51 H 0.04 1.93 7.40 -2.38 -0.02 1.91 16 52 H 0.07 2.62 5.79 -2.38 -0.01 2.60 16 Total: -1.00 -79.99 402.63 1.05 -78.94 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -1.46 Total: 31.28 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.42 Total: 3.65 kcal Atomic # 7 Polarization: -132.10 SS G_CDS: -4.86 Total: -136.97 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.07 Total: -26.67 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -79.99 1.05 -78.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992808400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.164 kcal (2) G-P(sol) polarization free energy of solvation -79.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds