Wall clock time and date at job start Wed Apr 1 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28434 * 125.19135 * 2 1 4 4 C 1.30871 * 110.92609 * 180.16589 * 3 2 1 5 5 C 1.50700 * 126.06740 * 179.87892 * 4 3 2 6 6 C 1.53002 * 109.46701 * 254.68605 * 5 4 3 7 7 C 1.52997 * 109.47545 * 14.68677 * 5 4 3 8 8 C 1.53002 * 109.47019 * 134.68732 * 5 4 3 9 9 C 1.39667 * 107.85905 * 359.61342 * 4 3 2 10 10 C 1.36604 * 125.18682 * 179.73918 * 2 1 3 11 11 C 1.47162 * 126.88500 * 359.97438 * 10 2 1 12 12 O 1.21631 * 119.99826 * 355.57214 * 11 10 2 13 13 N 1.34769 * 120.00001 * 175.57484 * 11 10 2 14 14 C 1.46498 * 120.00074 * 184.47750 * 13 11 10 15 15 C 1.50697 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.29457 * 117.69522 * 94.99896 * 15 14 13 17 17 C 1.50323 * 123.65481 * 180.85740 * 16 15 14 18 18 N 1.47009 * 109.16349 * 349.02738 * 17 16 15 19 19 C 1.36944 * 121.37393 * 222.96948 * 18 17 16 20 20 H 1.08000 * 120.00034 * 159.89244 * 19 18 17 21 21 C 1.38811 * 119.99969 * 339.89391 * 19 18 17 22 22 N 1.31621 * 119.99903 * 345.99624 * 21 19 18 23 23 Si 1.86799 * 120.00021 * 165.99552 * 21 19 18 24 24 H 1.48497 * 109.47015 * 90.00130 * 23 21 19 25 25 H 1.48508 * 109.47055 * 209.99857 * 23 21 19 26 26 H 1.48490 * 109.47237 * 329.99838 * 23 21 19 27 27 C 1.47341 * 117.25177 * 42.94359 * 18 17 16 28 28 C 1.49968 * 117.69536 * 274.73931 * 15 14 13 29 29 H 1.08997 * 109.46812 * 265.01569 * 1 2 3 30 30 H 1.08999 * 109.46680 * 25.00980 * 1 2 3 31 31 H 1.08997 * 109.47133 * 145.01356 * 1 2 3 32 32 H 1.08998 * 109.47109 * 60.00552 * 6 5 4 33 33 H 1.09011 * 109.46632 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47446 * 299.99728 * 6 5 4 35 35 H 1.08999 * 109.46970 * 59.99449 * 7 5 4 36 36 H 1.08998 * 109.47263 * 179.97438 * 7 5 4 37 37 H 1.09006 * 109.47302 * 300.00385 * 7 5 4 38 38 H 1.08999 * 109.46916 * 59.99846 * 8 5 4 39 39 H 1.08998 * 109.47174 * 179.97438 * 8 5 4 40 40 H 1.08998 * 109.47254 * 299.99942 * 8 5 4 41 41 H 1.08001 * 127.31816 * 180.20917 * 9 4 3 42 42 H 0.96997 * 120.00001 * 4.47861 * 13 11 10 43 43 H 1.09004 * 109.47361 * 300.00037 * 14 13 11 44 44 H 1.09006 * 109.47078 * 59.99960 * 14 13 11 45 45 H 1.08002 * 118.17081 * 0.88803 * 16 15 14 46 46 H 1.08996 * 109.52031 * 108.92764 * 17 16 15 47 47 H 1.08998 * 109.52306 * 229.11975 * 17 16 15 48 48 H 0.96999 * 120.00377 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.77658 * 57.80936 * 27 18 17 50 50 H 1.09005 * 109.77662 * 178.61893 * 27 18 17 51 51 H 1.08999 * 109.31626 * 281.28758 * 28 15 14 52 52 H 1.09001 * 109.31486 * 40.72077 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4736 0.7271 -0.0035 5 6 4.6336 1.6891 -0.0073 6 6 5.2653 1.7208 -1.4004 7 6 4.1367 3.0889 0.3594 8 6 5.6767 1.2341 1.0155 9 6 3.5612 -0.6668 0.0029 10 6 2.2522 -1.1164 0.0051 11 6 1.7992 -2.5166 0.0120 12 8 0.6128 -2.7715 0.0950 13 7 2.6989 -3.5163 -0.0736 14 6 2.2435 -4.9057 -0.1656 15 6 3.4376 -5.8211 -0.2505 16 6 3.8718 -6.3471 0.8498 17 6 5.0620 -7.2625 0.9227 18 7 5.4552 -7.6521 -0.4392 19 6 5.7967 -8.9435 -0.7408 20 1 5.7659 -9.2852 -1.7649 21 6 6.1824 -9.8135 0.2698 22 7 6.4868 -9.3445 1.4613 23 14 6.2693 -11.6499 -0.0613 24 1 7.6290 -12.0021 -0.5434 25 1 5.9805 -12.3930 1.1917 26 1 5.2677 -12.0144 -1.0951 27 6 5.4662 -6.5959 -1.4665 28 6 4.0354 -6.0633 -1.6043 29 1 -0.3633 -0.0893 1.0238 30 1 -0.3632 0.9313 -0.4345 31 1 -0.3633 -0.8419 -0.5892 32 1 4.5222 2.0449 -2.1290 33 1 6.1047 2.4163 -1.4030 34 1 5.6195 0.7235 -1.6616 35 1 3.6865 3.0662 1.3518 36 1 4.9758 3.7845 0.3571 37 1 3.3935 3.4130 -0.3692 38 1 6.0307 0.2369 0.7543 39 1 6.5159 1.9296 1.0125 40 1 5.2266 1.2115 2.0080 41 1 4.4594 -1.2664 0.0053 42 1 3.6480 -3.3160 -0.0742 43 1 1.6562 -5.1549 0.7182 44 1 1.6283 -5.0281 -1.0571 45 1 3.3496 -6.1158 1.7664 46 1 5.8902 -6.7452 1.4069 47 1 4.8024 -8.1527 1.4956 48 1 6.7567 -9.9523 2.1675 49 1 6.1354 -5.7916 -1.1613 50 1 5.7972 -7.0109 -2.4186 51 1 3.4267 -6.7898 -2.1426 52 1 4.0534 -5.1276 -2.1632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001112206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:35 Heat of formation + Delta-G solvation = 69.110947 kcal Electronic energy + Delta-G solvation = -30415.414907 eV Core-core repulsion = 26417.283665 eV Total energy + Delta-G solvation = -3998.131242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.78028 -39.55101 -37.80638 -37.22041 -35.10570 -33.25532 -32.64249 -31.42909 -30.63063 -29.69174 -27.66152 -27.46559 -27.04897 -26.88310 -24.50532 -23.04058 -22.72785 -22.18773 -21.11476 -20.52505 -19.11106 -17.84406 -17.60238 -16.51981 -16.37080 -15.89098 -15.55502 -15.27656 -15.02231 -14.82184 -14.36829 -14.31017 -14.18089 -13.97449 -13.70942 -13.57345 -13.41377 -13.06916 -12.97296 -12.71733 -12.41152 -12.37538 -12.29278 -12.08713 -11.87341 -11.62178 -11.52387 -11.42018 -11.27805 -11.19905 -10.93356 -10.76564 -10.67316 -10.45403 -10.35317 -10.18255 -9.86656 -9.64942 -9.37815 -9.06203 -9.00420 -8.75911 -8.09231 -6.83536 -5.82183 -3.19905 1.11523 2.14419 2.37365 2.60767 3.10038 3.35696 3.41789 3.42761 3.44737 4.11808 4.38524 4.45970 4.60691 4.72458 4.77040 4.96039 5.02027 5.07026 5.11061 5.26999 5.29887 5.32434 5.35974 5.37449 5.41502 5.51891 5.55348 5.57670 5.68561 5.70615 5.74932 5.81585 5.86779 5.88715 6.02067 6.08703 6.11295 6.12172 6.27630 6.28169 6.34886 6.46442 6.56643 6.67506 6.81657 7.12421 7.24710 7.28820 7.41215 7.67658 7.80520 7.88989 8.03980 8.33203 9.15917 9.78563 10.33867 11.27282 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.002197 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.037296 B =12741.703459 C =13819.747959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.260 5.260 3 N -0.274 5.274 4 C 0.038 3.962 5 C 0.017 3.983 6 C -0.137 4.137 7 C -0.134 4.134 8 C -0.140 4.140 9 C -0.181 4.181 10 C -0.034 4.034 11 C 0.587 3.413 12 O -0.548 6.548 13 N -0.702 5.702 14 C 0.160 3.840 15 C -0.171 4.171 16 C -0.119 4.119 17 C 0.188 3.812 18 N -0.597 5.597 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.006 4.006 22 N -0.914 5.914 23 Si 0.907 3.093 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.144 3.856 28 C -0.090 4.090 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.159 0.841 42 H 0.405 0.595 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.040 0.960 47 H 0.106 0.894 48 H 0.254 0.746 49 H 0.024 0.976 50 H 0.057 0.943 51 H 0.065 0.935 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 22.796 -2.577 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.047 5.047 3 N -0.106 5.106 4 C -0.119 4.119 5 C 0.016 3.984 6 C -0.195 4.195 7 C -0.191 4.191 8 C -0.197 4.197 9 C -0.210 4.210 10 C -0.163 4.163 11 C 0.372 3.628 12 O -0.426 6.426 13 N -0.353 5.353 14 C 0.038 3.962 15 C -0.172 4.172 16 C -0.140 4.140 17 C 0.063 3.937 18 N -0.320 5.320 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.203 4.203 22 N -0.560 5.560 23 Si 0.737 3.263 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.017 3.983 28 C -0.129 4.129 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.177 0.823 42 H 0.240 0.760 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.058 0.942 47 H 0.124 0.876 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.037 23.355 -2.406 24.816 hybrid contribution 0.834 -1.588 0.015 1.794 sum -7.203 21.767 -2.391 23.052 Atomic orbital electron populations 1.22264 0.72544 1.05301 1.04834 1.45524 1.07727 1.01672 1.49744 1.73109 1.03734 1.13268 1.20517 1.21817 0.91517 0.93188 1.05339 1.18905 0.90175 0.92778 0.96582 1.21871 1.00368 1.02368 0.94938 1.21758 1.00866 0.94582 1.01930 1.21886 0.97756 1.01756 0.98340 1.22072 0.95598 0.94949 1.08414 1.21421 0.91311 0.89743 1.13785 1.16952 0.85815 0.83082 0.76929 1.90783 1.16252 1.84650 1.50946 1.45909 1.09872 1.06283 1.73225 1.20529 0.95622 0.78136 1.01944 1.20456 0.98646 1.01637 0.96481 1.23353 0.98128 0.96243 0.96269 1.19939 0.89848 0.96443 0.87441 1.44181 1.78020 1.04888 1.04921 1.19232 1.38130 0.85827 0.93827 0.91154 1.24922 0.99982 0.98695 0.96675 1.69967 1.49643 1.33359 1.03038 0.86215 0.77823 0.85192 0.77096 1.21474 1.21565 1.20600 1.20982 0.92472 0.91439 0.93383 1.20785 0.99250 0.99505 0.93341 0.89770 0.88931 0.87662 0.92593 0.91916 0.92103 0.92599 0.92474 0.92151 0.91955 0.91865 0.92423 0.82297 0.75977 0.91278 0.91336 0.88747 0.94224 0.87594 0.93577 0.95792 0.92474 0.91705 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.61 59.85 0.64 1.47 16 2 N -0.26 -3.12 3.75 -63.88 -0.24 -3.36 16 3 N -0.27 -3.32 11.23 33.64 0.38 -2.94 16 4 C 0.04 0.42 5.65 -82.47 -0.47 -0.05 16 5 C 0.02 0.15 0.96 -155.66 -0.15 0.00 16 6 C -0.14 -1.04 8.46 37.16 0.31 -0.73 16 7 C -0.13 -1.08 8.03 37.16 0.30 -0.78 16 8 C -0.14 -1.05 8.20 37.16 0.30 -0.75 16 9 C -0.18 -1.99 9.78 -38.99 -0.38 -2.38 16 10 C -0.03 -0.43 6.96 -82.06 -0.57 -1.00 16 11 C 0.59 8.03 7.79 -12.64 -0.10 7.94 16 12 O -0.55 -8.72 14.88 5.25 0.08 -8.64 16 13 N -0.70 -8.94 5.54 -62.65 -0.35 -9.29 16 14 C 0.16 2.27 5.66 -5.20 -0.03 2.24 16 15 C -0.17 -2.80 5.22 -100.99 -0.53 -3.32 16 16 C -0.12 -2.17 9.47 -35.78 -0.34 -2.51 16 17 C 0.19 4.30 5.29 -5.10 -0.03 4.28 16 18 N -0.60 -14.41 3.02 -173.56 -0.52 -14.93 16 19 C -0.24 -6.43 9.76 -15.06 -0.15 -6.57 16 20 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 21 C -0.01 -0.16 5.09 -17.43 -0.09 -0.25 16 22 N -0.91 -25.68 10.70 55.49 0.59 -25.08 16 23 Si 0.91 21.37 29.58 -169.99 -5.03 16.35 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.14 2.83 6.59 -3.43 -0.02 2.80 16 28 C -0.09 -1.48 5.95 -28.09 -0.17 -1.65 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.02 6.73 -51.93 -0.35 0.68 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.06 0.46 7.60 -51.93 -0.39 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.16 1.42 7.31 -52.49 -0.38 1.03 16 42 H 0.40 4.57 7.49 -40.82 -0.31 4.26 16 43 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 44 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 45 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 46 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.11 2.74 6.04 -51.93 -0.31 2.43 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 51 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 416.36 15.07 6.27 6.27 Total: -1.00 -30.98 416.36 -9.13 -40.11 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.86 Total: 2.78 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.46 Total: -1.26 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.14 Total: -55.61 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.98 -9.13 -40.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001112206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.220 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds