Wall clock time and date at job start Wed Apr 1 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28434 * 125.19135 * 2 1 4 4 C 1.30871 * 110.92609 * 180.16589 * 3 2 1 5 5 C 1.50700 * 126.06740 * 179.87892 * 4 3 2 6 6 C 1.53002 * 109.46701 * 254.68605 * 5 4 3 7 7 C 1.52997 * 109.47545 * 14.68677 * 5 4 3 8 8 C 1.53002 * 109.47019 * 134.68732 * 5 4 3 9 9 C 1.39667 * 107.85905 * 359.61342 * 4 3 2 10 10 C 1.36604 * 125.18682 * 179.73918 * 2 1 3 11 11 C 1.47162 * 126.88500 * 359.97438 * 10 2 1 12 12 O 1.21631 * 119.99826 * 355.57214 * 11 10 2 13 13 N 1.34769 * 120.00001 * 175.57484 * 11 10 2 14 14 C 1.46498 * 120.00074 * 184.47750 * 13 11 10 15 15 C 1.50697 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.29457 * 117.69522 * 94.99896 * 15 14 13 17 17 C 1.50323 * 123.65481 * 180.85740 * 16 15 14 18 18 N 1.47009 * 109.16349 * 349.02738 * 17 16 15 19 19 C 1.36944 * 121.37393 * 222.96948 * 18 17 16 20 20 H 1.08000 * 120.00034 * 159.89244 * 19 18 17 21 21 C 1.38811 * 119.99969 * 339.89391 * 19 18 17 22 22 N 1.31621 * 119.99903 * 345.99624 * 21 19 18 23 23 Si 1.86799 * 120.00021 * 165.99552 * 21 19 18 24 24 H 1.48497 * 109.47015 * 90.00130 * 23 21 19 25 25 H 1.48508 * 109.47055 * 209.99857 * 23 21 19 26 26 H 1.48490 * 109.47237 * 329.99838 * 23 21 19 27 27 C 1.47341 * 117.25177 * 42.94359 * 18 17 16 28 28 C 1.49968 * 117.69536 * 274.73931 * 15 14 13 29 29 H 1.08997 * 109.46812 * 265.01569 * 1 2 3 30 30 H 1.08999 * 109.46680 * 25.00980 * 1 2 3 31 31 H 1.08997 * 109.47133 * 145.01356 * 1 2 3 32 32 H 1.08998 * 109.47109 * 60.00552 * 6 5 4 33 33 H 1.09011 * 109.46632 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47446 * 299.99728 * 6 5 4 35 35 H 1.08999 * 109.46970 * 59.99449 * 7 5 4 36 36 H 1.08998 * 109.47263 * 179.97438 * 7 5 4 37 37 H 1.09006 * 109.47302 * 300.00385 * 7 5 4 38 38 H 1.08999 * 109.46916 * 59.99846 * 8 5 4 39 39 H 1.08998 * 109.47174 * 179.97438 * 8 5 4 40 40 H 1.08998 * 109.47254 * 299.99942 * 8 5 4 41 41 H 1.08001 * 127.31816 * 180.20917 * 9 4 3 42 42 H 0.96997 * 120.00001 * 4.47861 * 13 11 10 43 43 H 1.09004 * 109.47361 * 300.00037 * 14 13 11 44 44 H 1.09006 * 109.47078 * 59.99960 * 14 13 11 45 45 H 1.08002 * 118.17081 * 0.88803 * 16 15 14 46 46 H 1.08996 * 109.52031 * 108.92764 * 17 16 15 47 47 H 1.08998 * 109.52306 * 229.11975 * 17 16 15 48 48 H 0.96999 * 120.00377 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.77658 * 57.80936 * 27 18 17 50 50 H 1.09005 * 109.77662 * 178.61893 * 27 18 17 51 51 H 1.08999 * 109.31626 * 281.28758 * 28 15 14 52 52 H 1.09001 * 109.31486 * 40.72077 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4736 0.7271 -0.0035 5 6 4.6336 1.6891 -0.0073 6 6 5.2653 1.7208 -1.4004 7 6 4.1367 3.0889 0.3594 8 6 5.6767 1.2341 1.0155 9 6 3.5612 -0.6668 0.0029 10 6 2.2522 -1.1164 0.0051 11 6 1.7992 -2.5166 0.0120 12 8 0.6128 -2.7715 0.0950 13 7 2.6989 -3.5163 -0.0736 14 6 2.2435 -4.9057 -0.1656 15 6 3.4376 -5.8211 -0.2505 16 6 3.8718 -6.3471 0.8498 17 6 5.0620 -7.2625 0.9227 18 7 5.4552 -7.6521 -0.4392 19 6 5.7967 -8.9435 -0.7408 20 1 5.7659 -9.2852 -1.7649 21 6 6.1824 -9.8135 0.2698 22 7 6.4868 -9.3445 1.4613 23 14 6.2693 -11.6499 -0.0613 24 1 7.6290 -12.0021 -0.5434 25 1 5.9805 -12.3930 1.1917 26 1 5.2677 -12.0144 -1.0951 27 6 5.4662 -6.5959 -1.4665 28 6 4.0354 -6.0633 -1.6043 29 1 -0.3633 -0.0893 1.0238 30 1 -0.3632 0.9313 -0.4345 31 1 -0.3633 -0.8419 -0.5892 32 1 4.5222 2.0449 -2.1290 33 1 6.1047 2.4163 -1.4030 34 1 5.6195 0.7235 -1.6616 35 1 3.6865 3.0662 1.3518 36 1 4.9758 3.7845 0.3571 37 1 3.3935 3.4130 -0.3692 38 1 6.0307 0.2369 0.7543 39 1 6.5159 1.9296 1.0125 40 1 5.2266 1.2115 2.0080 41 1 4.4594 -1.2664 0.0053 42 1 3.6480 -3.3160 -0.0742 43 1 1.6562 -5.1549 0.7182 44 1 1.6283 -5.0281 -1.0571 45 1 3.3496 -6.1158 1.7664 46 1 5.8902 -6.7452 1.4069 47 1 4.8024 -8.1527 1.4956 48 1 6.7567 -9.9523 2.1675 49 1 6.1354 -5.7916 -1.1613 50 1 5.7972 -7.0109 -2.4186 51 1 3.4267 -6.7898 -2.1426 52 1 4.0534 -5.1276 -2.1632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001112206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:33 Heat of formation + Delta-G solvation = 51.494207 kcal Electronic energy + Delta-G solvation = -30416.178827 eV Core-core repulsion = 26417.283665 eV Total energy + Delta-G solvation = -3998.895162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.63895 -40.67368 -39.29598 -37.91633 -36.49110 -34.71291 -33.57742 -32.82752 -31.87016 -31.31231 -28.70778 -28.08924 -28.04026 -27.72925 -26.09040 -24.44906 -23.94492 -23.14061 -22.60807 -21.45732 -20.07412 -19.43674 -18.60484 -17.52079 -17.41252 -17.26765 -17.02980 -16.57737 -16.08749 -15.90266 -15.61254 -15.32796 -15.20984 -15.05029 -14.94761 -14.86219 -14.47427 -14.40199 -13.91697 -13.72815 -13.60580 -13.44525 -13.27466 -12.97896 -12.95100 -12.91099 -12.76506 -12.56771 -12.48282 -12.25271 -12.22387 -12.07695 -11.94940 -11.82785 -11.68586 -11.41317 -11.35728 -11.21019 -10.68954 -10.39027 -10.02446 -9.85985 -9.63981 -8.77127 -7.85148 -5.24649 0.17609 1.07402 1.47850 1.49727 1.50572 1.53656 1.58554 2.09903 2.33862 2.52570 3.31192 3.36776 3.49820 3.63351 3.81155 3.90162 3.98097 4.08425 4.14789 4.26245 4.29811 4.36522 4.44512 4.53806 4.55750 4.59716 4.62630 4.69928 4.75443 4.85908 4.86768 4.89797 4.93519 4.97429 5.09793 5.10912 5.11511 5.17857 5.22749 5.26813 5.28421 5.44777 5.48488 5.50242 5.53468 5.54587 5.62101 5.75867 5.78388 6.18612 6.35394 6.36401 6.96085 7.07358 7.15654 7.86466 8.37359 9.22245 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.002197 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.037296 B =12741.703459 C =13819.747959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.267 5.267 3 N -0.286 5.286 4 C 0.031 3.969 5 C 0.016 3.984 6 C -0.134 4.134 7 C -0.130 4.130 8 C -0.138 4.138 9 C -0.176 4.176 10 C -0.053 4.053 11 C 0.591 3.409 12 O -0.573 6.573 13 N -0.694 5.694 14 C 0.170 3.830 15 C -0.142 4.142 16 C -0.138 4.138 17 C 0.199 3.801 18 N -0.617 5.617 19 C -0.250 4.250 20 H 0.073 0.927 21 C -0.059 4.059 22 N -0.942 5.942 23 Si 0.968 3.032 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.138 3.862 28 C -0.084 4.084 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.179 0.821 42 H 0.414 0.586 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.013 0.987 47 H 0.069 0.931 48 H 0.249 0.751 49 H 0.031 0.969 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 24.247 -3.842 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.054 5.054 3 N -0.120 5.120 4 C -0.125 4.125 5 C 0.014 3.986 6 C -0.192 4.192 7 C -0.188 4.188 8 C -0.196 4.196 9 C -0.205 4.205 10 C -0.181 4.181 11 C 0.377 3.623 12 O -0.453 6.453 13 N -0.345 5.345 14 C 0.048 3.952 15 C -0.143 4.143 16 C -0.158 4.158 17 C 0.074 3.926 18 N -0.341 5.341 19 C -0.380 4.380 20 H 0.091 0.909 21 C -0.253 4.253 22 N -0.589 5.589 23 Si 0.796 3.204 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.198 1.198 27 C 0.013 3.987 28 C -0.123 4.123 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.196 0.804 42 H 0.251 0.749 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.130 0.870 46 H 0.031 0.969 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.077 0.923 51 H 0.082 0.918 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.159 24.835 -3.698 26.401 hybrid contribution 0.880 -1.936 0.342 2.154 sum -7.278 22.900 -3.356 24.262 Atomic orbital electron populations 1.22397 0.71502 1.06072 1.05250 1.45793 1.08519 1.01482 1.49653 1.73110 1.04412 1.13525 1.20906 1.22296 0.91801 0.93785 1.04585 1.19042 0.89647 0.92411 0.97525 1.21854 1.00589 1.02876 0.93923 1.21727 1.01269 0.94815 1.00972 1.21884 0.97850 1.02379 0.97453 1.22364 0.95722 0.95200 1.07235 1.21377 0.92097 0.89322 1.15316 1.17042 0.85404 0.83569 0.76275 1.90772 1.17312 1.85056 1.52166 1.45702 1.10307 1.05480 1.73003 1.20321 0.94313 0.78330 1.02274 1.20561 0.98022 1.00044 0.95661 1.23006 0.97734 0.97023 0.98065 1.19562 0.90910 0.95604 0.86563 1.44460 1.78254 1.05250 1.06131 1.19565 1.37214 0.87320 0.93926 0.90935 1.25651 1.00554 1.02410 0.96699 1.70143 1.50930 1.34190 1.03686 0.85258 0.77787 0.80650 0.76678 1.21259 1.22105 1.19759 1.21185 0.94706 0.90554 0.92252 1.20728 0.96840 1.00979 0.93733 0.89252 0.86960 0.88358 0.93478 0.90208 0.92038 0.93597 0.90636 0.93074 0.91694 0.90254 0.93286 0.80373 0.74909 0.91492 0.90633 0.87042 0.96891 0.91302 0.94200 0.95084 0.92262 0.91823 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.61 127.77 1.36 2.88 16 2 N -0.27 -6.13 3.75 -356.02 -1.33 -7.47 16 3 N -0.29 -6.63 11.23 -47.49 -0.53 -7.16 16 4 C 0.03 0.64 5.65 43.05 0.24 0.89 16 5 C 0.02 0.24 0.96 -52.93 -0.05 0.19 16 6 C -0.13 -1.74 8.46 71.98 0.61 -1.13 16 7 C -0.13 -1.89 8.03 71.98 0.58 -1.31 16 8 C -0.14 -1.78 8.20 71.98 0.59 -1.19 16 9 C -0.18 -3.53 9.78 22.65 0.22 -3.31 16 10 C -0.05 -1.24 6.96 40.78 0.28 -0.96 16 11 C 0.59 15.16 7.79 86.59 0.67 15.84 16 12 O -0.57 -17.51 14.88 -4.13 -0.06 -17.57 16 13 N -0.69 -15.96 5.54 -470.37 -2.60 -18.57 16 14 C 0.17 4.41 5.66 85.63 0.49 4.89 16 15 C -0.14 -4.33 5.22 -15.14 -0.08 -4.41 16 16 C -0.14 -4.94 9.47 27.10 0.26 -4.68 16 17 C 0.20 9.32 5.29 85.42 0.45 9.77 16 18 N -0.62 -29.91 3.02 -703.01 -2.12 -32.03 16 19 C -0.25 -13.45 9.76 84.03 0.82 -12.63 16 20 H 0.07 3.77 7.87 -2.91 -0.02 3.74 16 21 C -0.06 -3.25 5.09 84.86 0.43 -2.82 16 22 N -0.94 -54.56 10.70 21.65 0.23 -54.32 16 23 Si 0.97 44.48 29.58 68.60 2.03 46.51 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 C 0.14 5.24 6.59 86.32 0.57 5.81 16 28 C -0.08 -2.55 5.95 29.72 0.18 -2.38 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.10 1.86 6.73 -2.39 -0.02 1.84 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.83 8.09 -2.38 -0.02 0.81 16 38 H 0.06 0.80 7.60 -2.39 -0.02 0.78 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.18 2.70 7.31 -2.91 -0.02 2.68 16 42 H 0.41 8.14 7.49 -92.71 -0.69 7.45 16 43 H 0.07 1.83 7.78 -2.39 -0.02 1.81 16 44 H 0.08 1.93 8.11 -2.38 -0.02 1.91 16 45 H 0.11 3.59 7.73 -2.91 -0.02 3.56 16 46 H 0.01 0.67 8.14 -2.39 -0.02 0.66 16 47 H 0.07 3.72 6.04 -2.39 -0.01 3.71 16 48 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 49 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 2.19 7.96 -2.38 -0.02 2.17 16 51 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -67.55 416.36 3.43 -64.11 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.21 Total: 21.06 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 7.62 Total: 5.44 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.36 Total: -119.55 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.06 Total: -17.57 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.55 3.43 -64.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001112206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.607 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds