Wall clock time and date at job start Wed Apr 1 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34266 * 125.75057 * 2 1 4 4 C 1.38049 * 107.41240 * 180.11156 * 3 2 1 5 5 C 1.47433 * 126.41107 * 179.87328 * 4 3 2 6 6 O 1.21605 * 119.99989 * 187.28204 * 5 4 3 7 7 N 1.34775 * 119.99782 * 7.27574 * 5 4 3 8 8 C 1.46500 * 119.99842 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47465 * 180.02562 * 8 7 5 10 10 C 1.29450 * 117.69466 * 94.99960 * 9 8 7 11 11 C 1.50322 * 123.65083 * 180.57898 * 10 9 8 12 12 N 1.47002 * 109.16399 * 349.28057 * 11 10 9 13 13 C 1.36940 * 121.37180 * 222.96449 * 12 11 10 14 14 H 1.08007 * 119.99477 * 155.67218 * 13 12 11 15 15 C 1.38802 * 120.00489 * 335.67607 * 13 12 11 16 16 N 1.31621 * 119.99880 * 349.17217 * 15 13 12 17 17 Si 1.86800 * 120.00209 * 169.17343 * 15 13 12 18 18 H 1.48500 * 109.47341 * 59.99948 * 17 15 13 19 19 H 1.48501 * 109.47139 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47272 * 299.99779 * 17 15 13 21 21 C 1.47337 * 117.25054 * 42.95007 * 12 11 10 22 22 C 1.49958 * 117.68835 * 275.22265 * 9 8 7 23 23 C 1.41290 * 107.17122 * 359.60850 * 4 3 2 24 24 C 1.50700 * 125.98488 * 180.24625 * 23 4 3 25 25 C 1.52996 * 109.47228 * 56.72751 * 24 23 4 26 26 C 1.52999 * 109.46882 * 176.73172 * 24 23 4 27 27 C 1.53003 * 109.46985 * 296.73010 * 24 23 4 28 28 N 1.30442 * 108.02134 * 0.24025 * 23 4 3 29 29 H 1.08998 * 109.47139 * 270.30728 * 1 2 3 30 30 H 1.08998 * 109.47372 * 30.30970 * 1 2 3 31 31 H 1.09000 * 109.46940 * 150.30769 * 1 2 3 32 32 H 1.07997 * 126.29587 * 359.96132 * 3 2 1 33 33 H 0.97001 * 120.00208 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.47090 * 60.00070 * 8 7 5 35 35 H 1.09003 * 109.47310 * 300.00393 * 8 7 5 36 36 H 1.07999 * 118.17459 * 0.85838 * 10 9 8 37 37 H 1.09009 * 109.52150 * 109.18886 * 11 10 9 38 38 H 1.09000 * 109.52535 * 229.37040 * 11 10 9 39 39 H 0.96999 * 120.00126 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.78053 * 57.81176 * 21 12 11 41 41 H 1.08999 * 109.77562 * 178.61835 * 21 12 11 42 42 H 1.09004 * 109.43879 * 40.81847 * 22 9 8 43 43 H 1.09003 * 109.13105 * 281.42428 * 22 9 8 44 44 H 1.08998 * 109.46791 * 68.87701 * 25 24 23 45 45 H 1.09010 * 109.46736 * 188.87347 * 25 24 23 46 46 H 1.08999 * 109.47389 * 308.87204 * 25 24 23 47 47 H 1.09004 * 109.47170 * 59.99834 * 26 24 23 48 48 H 1.09000 * 109.47046 * 179.97438 * 26 24 23 49 49 H 1.08994 * 109.46937 * 299.99455 * 26 24 23 50 50 H 1.08997 * 109.47147 * 65.54734 * 27 24 23 51 51 H 1.08999 * 109.47147 * 185.55302 * 27 24 23 52 52 H 1.09006 * 109.46678 * 305.54686 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0897 0.0000 4 6 3.5598 0.6553 -0.0026 5 6 4.7638 1.5062 -0.0061 6 8 5.8629 1.0040 -0.1416 7 7 4.6462 2.8408 0.1407 8 6 5.8425 3.6864 0.1366 9 6 5.4398 5.1274 0.3168 10 6 5.4618 5.6127 1.5167 11 6 5.0752 7.0264 1.8507 12 7 4.9342 7.7951 0.6056 13 6 5.4314 9.0660 0.4923 14 1 5.6783 9.4645 -0.4808 15 6 5.6182 9.8421 1.6278 16 7 5.1252 9.4479 2.7828 17 14 6.5693 11.4461 1.5169 18 1 5.8883 12.3606 0.5654 19 1 6.6278 12.0806 2.8582 20 1 7.9483 11.1719 1.0390 21 6 4.2363 7.1416 -0.5153 22 6 5.0369 5.8965 -0.9059 23 6 3.5311 -0.7573 0.0051 24 6 4.7322 -1.6673 0.0107 25 6 5.6159 -1.3381 1.2154 26 6 4.2689 -3.1227 0.1006 27 6 5.5313 -1.4652 -1.2783 28 7 2.2827 -1.1355 0.0066 29 1 -0.3633 0.0055 1.0276 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3633 -0.8927 -0.5090 32 1 1.9165 2.1170 -0.0006 33 1 3.7694 3.2414 0.2491 34 1 6.3657 3.5710 -0.8126 35 1 6.5007 3.3887 0.9528 36 1 5.7798 4.9672 2.3221 37 1 4.1272 7.0274 2.3888 38 1 5.8482 7.4783 2.4723 39 1 5.2560 9.9901 3.5764 40 1 3.2319 6.8524 -0.2061 41 1 4.1796 7.8246 -1.3629 42 1 4.4264 5.2622 -1.5486 43 1 5.9324 6.1993 -1.4486 44 1 5.1040 -1.6304 2.1322 45 1 6.5570 -1.8824 1.1353 46 1 5.8165 -0.2669 1.2370 47 1 3.6393 -3.3573 -0.7577 48 1 5.1376 -3.7810 0.1042 49 1 3.6997 -3.2667 1.0189 50 1 5.9442 -0.4566 -1.2954 51 1 6.3432 -2.1911 -1.3201 52 1 4.8753 -1.6039 -2.1378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001274318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:39 Heat of formation + Delta-G solvation = 77.118399 kcal Electronic energy + Delta-G solvation = -30795.964893 eV Core-core repulsion = 26798.180879 eV Total energy + Delta-G solvation = -3997.784013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.74874 -39.27381 -37.78420 -36.88335 -34.83461 -33.12657 -32.75582 -31.17318 -30.40941 -29.67838 -27.46468 -27.24512 -27.11962 -26.52809 -24.33452 -22.90108 -22.57310 -21.88905 -21.11218 -20.21139 -18.73056 -17.96946 -17.59707 -16.27745 -15.95966 -15.79680 -15.51589 -15.21660 -15.03186 -14.86576 -14.35349 -14.15668 -14.13828 -13.89541 -13.68738 -13.46719 -13.21431 -13.11776 -12.83075 -12.68943 -12.28289 -12.14134 -12.10629 -11.99317 -11.60166 -11.50800 -11.42600 -11.18875 -11.12514 -10.95680 -10.89355 -10.77576 -10.55954 -10.39364 -10.30279 -9.87573 -9.67031 -9.57376 -9.56324 -8.96244 -8.73604 -8.68534 -8.05754 -6.77425 -5.81991 -3.23324 1.31661 2.05720 2.09230 2.62633 3.36767 3.42291 3.43255 3.44236 3.65148 4.06461 4.34074 4.46104 4.54260 4.74045 4.83297 4.99159 5.01726 5.02456 5.13331 5.25864 5.31515 5.35364 5.40136 5.46054 5.57791 5.66128 5.71634 5.84332 5.86132 5.91135 5.96289 5.99893 6.04343 6.08478 6.10064 6.15681 6.30739 6.37043 6.38822 6.48987 6.52953 6.57426 6.69801 6.78255 6.83611 7.16221 7.27522 7.32066 7.39725 7.68304 7.70728 7.82182 8.35978 8.40906 9.17165 9.78810 10.36260 11.27789 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002191 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.153382 B =12774.115045 C =13494.820150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.364 5.364 3 C 0.099 3.901 4 C -0.284 4.284 5 C 0.588 3.412 6 O -0.533 6.533 7 N -0.718 5.718 8 C 0.160 3.840 9 C -0.168 4.168 10 C -0.124 4.124 11 C 0.192 3.808 12 N -0.596 5.596 13 C -0.244 4.244 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.914 5.914 17 Si 0.908 3.092 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.144 3.856 22 C -0.090 4.090 23 C 0.146 3.854 24 C 0.020 3.980 25 C -0.149 4.149 26 C -0.136 4.136 27 C -0.152 4.152 28 N -0.299 5.299 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.397 0.603 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.099 0.901 39 H 0.255 0.745 40 H 0.022 0.978 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.055 0.945 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 -21.158 -5.283 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.142 5.142 3 C -0.053 4.053 4 C -0.299 4.299 5 C 0.376 3.624 6 O -0.413 6.413 7 N -0.369 5.369 8 C 0.038 3.962 9 C -0.169 4.169 10 C -0.145 4.145 11 C 0.068 3.932 12 N -0.319 5.319 13 C -0.374 4.374 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.559 5.559 17 Si 0.738 3.262 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.018 3.982 22 C -0.129 4.129 23 C -0.022 4.022 24 C 0.018 3.982 25 C -0.206 4.206 26 C -0.194 4.194 27 C -0.209 4.209 28 N -0.120 5.120 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.200 0.800 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.118 0.882 51 H 0.074 0.926 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.973 -22.377 -5.222 24.322 hybrid contribution 0.275 1.753 0.148 1.781 sum -7.698 -20.623 -5.074 22.591 Atomic orbital electron populations 1.21981 0.73599 1.04922 1.03877 1.48312 1.07046 1.03876 1.54931 1.23129 0.90555 0.93824 0.97781 1.20268 0.92603 0.93965 1.23060 1.17254 0.87702 0.81387 0.76069 1.90575 1.27442 1.72868 1.50371 1.46042 1.10684 1.06070 1.74061 1.20435 0.86423 0.87519 1.01869 1.20489 1.06676 0.93648 0.96042 1.23320 0.95420 1.00036 0.95736 1.19833 1.00164 0.84321 0.88920 1.44115 1.64565 1.13242 1.09991 1.19159 1.35559 0.89263 0.93399 0.91404 1.25019 1.00472 0.98082 0.96374 1.69949 1.47518 1.39095 0.99355 0.86281 0.80015 0.83249 0.76690 1.20945 1.21599 1.21033 1.20945 0.93057 0.92392 0.91841 1.20749 1.00272 0.97263 0.94615 1.22410 0.92845 0.92194 0.94747 1.18970 0.89320 0.91962 0.97989 1.22104 0.98241 1.05296 0.94997 1.21826 1.00832 0.94622 1.02078 1.22151 0.98991 1.05533 0.94267 1.77183 1.01299 1.06988 1.26489 0.90246 0.89011 0.88969 0.80023 0.76956 0.91553 0.91608 0.88803 0.94303 0.88297 0.93518 0.96039 0.92515 0.92916 0.91804 0.93823 0.92283 0.89112 0.92566 0.92390 0.92663 0.88195 0.92587 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.44 59.84 0.68 1.16 16 2 N -0.36 -3.44 3.98 -67.60 -0.27 -3.71 16 3 C 0.10 0.92 10.99 -16.56 -0.18 0.74 16 4 C -0.28 -3.45 5.94 -105.06 -0.62 -4.07 16 5 C 0.59 7.88 7.29 -12.52 -0.09 7.79 16 6 O -0.53 -8.23 10.30 5.27 0.05 -8.17 16 7 N -0.72 -8.93 5.54 -62.56 -0.35 -9.27 16 8 C 0.16 2.28 5.66 -5.19 -0.03 2.25 16 9 C -0.17 -2.74 5.23 -100.99 -0.53 -3.27 16 10 C -0.12 -2.28 9.47 -35.78 -0.34 -2.61 16 11 C 0.19 4.41 5.22 -5.10 -0.03 4.39 16 12 N -0.60 -14.42 3.01 -173.68 -0.52 -14.94 16 13 C -0.24 -6.54 9.73 -15.06 -0.15 -6.68 16 14 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 15 C 0.00 -0.05 5.12 -17.43 -0.09 -0.14 16 16 N -0.91 -25.72 10.82 55.49 0.60 -25.12 16 17 Si 0.91 21.39 29.57 -169.99 -5.03 16.36 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.14 2.84 6.58 -3.53 -0.02 2.81 16 22 C -0.09 -1.49 5.94 -28.19 -0.17 -1.65 16 23 C 0.15 1.85 5.64 -82.02 -0.46 1.39 16 24 C 0.02 0.23 0.75 -155.66 -0.12 0.12 16 25 C -0.15 -1.79 8.18 37.16 0.30 -1.48 16 26 C -0.14 -1.40 7.95 37.16 0.30 -1.10 16 27 C -0.15 -1.80 8.27 37.16 0.31 -1.49 16 28 N -0.30 -3.66 11.80 33.89 0.40 -3.26 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.18 1.06 7.51 -52.49 -0.39 0.67 16 33 H 0.40 4.23 7.43 -40.82 -0.30 3.93 16 34 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 36 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 37 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.10 2.56 6.27 -51.93 -0.33 2.24 16 39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.09 7.96 -51.93 -0.41 0.68 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 45 H 0.06 0.64 8.12 -51.92 -0.42 0.22 16 46 H 0.09 1.28 4.50 -51.93 -0.23 1.04 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.10 1.39 4.77 -51.93 -0.25 1.14 16 51 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 407.90 15.07 6.15 6.15 Total: -1.00 -31.84 407.90 -8.81 -40.65 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.61 Total: 3.19 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.23 Total: -1.87 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.14 Total: -56.30 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.05 Total: -8.17 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.84 -8.81 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001274318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.770 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds