Wall clock time and date at job start Wed Apr 1 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34266 * 125.75057 * 2 1 4 4 C 1.38049 * 107.41240 * 180.11156 * 3 2 1 5 5 C 1.47433 * 126.41107 * 179.87328 * 4 3 2 6 6 O 1.21605 * 119.99989 * 187.28204 * 5 4 3 7 7 N 1.34775 * 119.99782 * 7.27574 * 5 4 3 8 8 C 1.46500 * 119.99842 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47465 * 180.02562 * 8 7 5 10 10 C 1.29450 * 117.69466 * 94.99960 * 9 8 7 11 11 C 1.50322 * 123.65083 * 180.57898 * 10 9 8 12 12 N 1.47002 * 109.16399 * 349.28057 * 11 10 9 13 13 C 1.36940 * 121.37180 * 222.96449 * 12 11 10 14 14 H 1.08007 * 119.99477 * 155.67218 * 13 12 11 15 15 C 1.38802 * 120.00489 * 335.67607 * 13 12 11 16 16 N 1.31621 * 119.99880 * 349.17217 * 15 13 12 17 17 Si 1.86800 * 120.00209 * 169.17343 * 15 13 12 18 18 H 1.48500 * 109.47341 * 59.99948 * 17 15 13 19 19 H 1.48501 * 109.47139 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47272 * 299.99779 * 17 15 13 21 21 C 1.47337 * 117.25054 * 42.95007 * 12 11 10 22 22 C 1.49958 * 117.68835 * 275.22265 * 9 8 7 23 23 C 1.41290 * 107.17122 * 359.60850 * 4 3 2 24 24 C 1.50700 * 125.98488 * 180.24625 * 23 4 3 25 25 C 1.52996 * 109.47228 * 56.72751 * 24 23 4 26 26 C 1.52999 * 109.46882 * 176.73172 * 24 23 4 27 27 C 1.53003 * 109.46985 * 296.73010 * 24 23 4 28 28 N 1.30442 * 108.02134 * 0.24025 * 23 4 3 29 29 H 1.08998 * 109.47139 * 270.30728 * 1 2 3 30 30 H 1.08998 * 109.47372 * 30.30970 * 1 2 3 31 31 H 1.09000 * 109.46940 * 150.30769 * 1 2 3 32 32 H 1.07997 * 126.29587 * 359.96132 * 3 2 1 33 33 H 0.97001 * 120.00208 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.47090 * 60.00070 * 8 7 5 35 35 H 1.09003 * 109.47310 * 300.00393 * 8 7 5 36 36 H 1.07999 * 118.17459 * 0.85838 * 10 9 8 37 37 H 1.09009 * 109.52150 * 109.18886 * 11 10 9 38 38 H 1.09000 * 109.52535 * 229.37040 * 11 10 9 39 39 H 0.96999 * 120.00126 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.78053 * 57.81176 * 21 12 11 41 41 H 1.08999 * 109.77562 * 178.61835 * 21 12 11 42 42 H 1.09004 * 109.43879 * 40.81847 * 22 9 8 43 43 H 1.09003 * 109.13105 * 281.42428 * 22 9 8 44 44 H 1.08998 * 109.46791 * 68.87701 * 25 24 23 45 45 H 1.09010 * 109.46736 * 188.87347 * 25 24 23 46 46 H 1.08999 * 109.47389 * 308.87204 * 25 24 23 47 47 H 1.09004 * 109.47170 * 59.99834 * 26 24 23 48 48 H 1.09000 * 109.47046 * 179.97438 * 26 24 23 49 49 H 1.08994 * 109.46937 * 299.99455 * 26 24 23 50 50 H 1.08997 * 109.47147 * 65.54734 * 27 24 23 51 51 H 1.08999 * 109.47147 * 185.55302 * 27 24 23 52 52 H 1.09006 * 109.46678 * 305.54686 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0897 0.0000 4 6 3.5598 0.6553 -0.0026 5 6 4.7638 1.5062 -0.0061 6 8 5.8629 1.0040 -0.1416 7 7 4.6462 2.8408 0.1407 8 6 5.8425 3.6864 0.1366 9 6 5.4398 5.1274 0.3168 10 6 5.4618 5.6127 1.5167 11 6 5.0752 7.0264 1.8507 12 7 4.9342 7.7951 0.6056 13 6 5.4314 9.0660 0.4923 14 1 5.6783 9.4645 -0.4808 15 6 5.6182 9.8421 1.6278 16 7 5.1252 9.4479 2.7828 17 14 6.5693 11.4461 1.5169 18 1 5.8883 12.3606 0.5654 19 1 6.6278 12.0806 2.8582 20 1 7.9483 11.1719 1.0390 21 6 4.2363 7.1416 -0.5153 22 6 5.0369 5.8965 -0.9059 23 6 3.5311 -0.7573 0.0051 24 6 4.7322 -1.6673 0.0107 25 6 5.6159 -1.3381 1.2154 26 6 4.2689 -3.1227 0.1006 27 6 5.5313 -1.4652 -1.2783 28 7 2.2827 -1.1355 0.0066 29 1 -0.3633 0.0055 1.0276 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3633 -0.8927 -0.5090 32 1 1.9165 2.1170 -0.0006 33 1 3.7694 3.2414 0.2491 34 1 6.3657 3.5710 -0.8126 35 1 6.5007 3.3887 0.9528 36 1 5.7798 4.9672 2.3221 37 1 4.1272 7.0274 2.3888 38 1 5.8482 7.4783 2.4723 39 1 5.2560 9.9901 3.5764 40 1 3.2319 6.8524 -0.2061 41 1 4.1796 7.8246 -1.3629 42 1 4.4264 5.2622 -1.5486 43 1 5.9324 6.1993 -1.4486 44 1 5.1040 -1.6304 2.1322 45 1 6.5570 -1.8824 1.1353 46 1 5.8165 -0.2669 1.2370 47 1 3.6393 -3.3573 -0.7577 48 1 5.1376 -3.7810 0.1042 49 1 3.6997 -3.2667 1.0189 50 1 5.9442 -0.4566 -1.2954 51 1 6.3432 -2.1911 -1.3201 52 1 4.8753 -1.6039 -2.1378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001274318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:38 Heat of formation + Delta-G solvation = 58.215548 kcal Electronic energy + Delta-G solvation = -30796.784582 eV Core-core repulsion = 26798.180879 eV Total energy + Delta-G solvation = -3998.603702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.54730 -40.34350 -39.22767 -37.79876 -36.22842 -34.49788 -33.61765 -32.67325 -31.53756 -31.21602 -28.60536 -28.10449 -28.04719 -27.56212 -25.88461 -24.37838 -23.70792 -22.69586 -22.64343 -21.14785 -19.66923 -19.40032 -18.77501 -17.46789 -17.03945 -16.99314 -16.67027 -16.53647 -16.07829 -15.80170 -15.68717 -15.37837 -15.19662 -15.07318 -14.93700 -14.88647 -14.45726 -13.96518 -13.73187 -13.66490 -13.50943 -13.31665 -13.25225 -12.98306 -12.94241 -12.84298 -12.71146 -12.58023 -12.30949 -12.28379 -12.19562 -12.02212 -11.95494 -11.82930 -11.69165 -11.41078 -11.20068 -10.70767 -10.62631 -10.35050 -9.96702 -9.58585 -9.54368 -8.71183 -7.85250 -5.28486 0.56441 1.15916 1.24161 1.48429 1.49973 1.50834 1.56835 2.48776 2.52507 2.58622 3.32147 3.33725 3.65777 3.67757 3.89809 3.97541 4.03559 4.10230 4.14405 4.28007 4.37929 4.43781 4.49612 4.51401 4.58188 4.66567 4.71759 4.75149 4.82870 4.83860 4.87489 4.90980 4.96580 4.97824 5.04539 5.12708 5.14697 5.16481 5.20599 5.26938 5.41340 5.46386 5.53314 5.55362 5.57274 5.62758 5.79064 5.83398 5.93467 6.22983 6.37419 6.56472 6.75334 7.16707 7.42931 7.86721 8.39346 9.22245 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002191 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.153382 B =12774.115045 C =13494.820150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.116 3.884 4 C -0.313 4.313 5 C 0.588 3.412 6 O -0.557 6.557 7 N -0.710 5.710 8 C 0.172 3.828 9 C -0.137 4.137 10 C -0.143 4.143 11 C 0.204 3.796 12 N -0.616 5.616 13 C -0.254 4.254 14 H 0.070 0.930 15 C -0.056 4.056 16 N -0.941 5.941 17 Si 0.968 3.032 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.281 1.281 21 C 0.139 3.861 22 C -0.084 4.084 23 C 0.131 3.869 24 C 0.015 3.985 25 C -0.143 4.143 26 C -0.128 4.128 27 C -0.145 4.145 28 N -0.323 5.323 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.220 0.780 33 H 0.407 0.593 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.013 0.987 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.031 0.969 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.081 0.919 51 H 0.066 0.934 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 -22.098 -6.740 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.137 5.137 3 C -0.037 4.037 4 C -0.328 4.328 5 C 0.378 3.622 6 O -0.438 6.438 7 N -0.361 5.361 8 C 0.049 3.951 9 C -0.138 4.138 10 C -0.164 4.164 11 C 0.079 3.921 12 N -0.341 5.341 13 C -0.384 4.384 14 H 0.088 0.912 15 C -0.250 4.250 16 N -0.588 5.588 17 Si 0.797 3.203 18 H -0.201 1.201 19 H -0.221 1.221 20 H -0.207 1.207 21 C 0.014 3.986 22 C -0.122 4.122 23 C -0.036 4.036 24 C 0.013 3.987 25 C -0.201 4.201 26 C -0.186 4.186 27 C -0.203 4.203 28 N -0.144 5.144 29 H 0.110 0.890 30 H 0.140 0.860 31 H 0.113 0.887 32 H 0.236 0.764 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.099 0.901 51 H 0.085 0.915 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.109 -23.346 -6.707 25.942 hybrid contribution 0.500 2.001 0.527 2.128 sum -8.609 -21.346 -6.179 23.831 Atomic orbital electron populations 1.22384 0.71007 1.06606 1.05237 1.48698 1.08455 1.03225 1.53371 1.23634 0.89537 0.95236 0.95316 1.20240 0.93245 0.93721 1.25625 1.17428 0.87873 0.81445 0.75462 1.90576 1.28534 1.73295 1.51427 1.45812 1.10543 1.05680 1.74113 1.20180 0.87052 0.86061 1.01822 1.20599 1.03572 0.94549 0.95095 1.22958 0.98359 0.97738 0.97336 1.19450 0.97852 0.86661 0.88142 1.44399 1.65306 1.13012 1.11342 1.19496 1.35066 0.90405 0.93461 0.91208 1.25752 1.01823 1.01196 0.96242 1.70126 1.48940 1.40067 0.99707 0.85319 0.78803 0.79868 0.76324 1.20101 1.22133 1.20683 1.21146 0.93611 0.93435 0.90425 1.20693 1.00247 0.96331 0.94979 1.22549 0.93199 0.92713 0.95184 1.19008 0.89326 0.92805 0.97553 1.22020 0.98729 1.04017 0.95313 1.21748 1.01214 0.93942 1.01663 1.22054 0.99211 1.04634 0.94369 1.77118 1.01448 1.08608 1.27245 0.89021 0.86035 0.88655 0.76365 0.75673 0.91280 0.92154 0.87249 0.96919 0.92148 0.94181 0.95123 0.92366 0.89164 0.92124 0.93785 0.91570 0.91046 0.92865 0.91046 0.93086 0.90100 0.91495 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.44 127.77 1.46 2.03 16 2 N -0.36 -5.87 3.98 -367.79 -1.46 -7.33 16 3 C 0.12 1.82 10.99 84.28 0.93 2.74 16 4 C -0.31 -7.10 5.94 -20.15 -0.12 -7.22 16 5 C 0.59 14.94 7.29 86.67 0.63 15.57 16 6 O -0.56 -16.89 10.30 -4.05 -0.04 -16.93 16 7 N -0.71 -15.94 5.54 -470.09 -2.60 -18.54 16 8 C 0.17 4.53 5.66 85.63 0.48 5.01 16 9 C -0.14 -4.21 5.23 -15.14 -0.08 -4.29 16 10 C -0.14 -5.17 9.47 27.11 0.26 -4.91 16 11 C 0.20 9.60 5.22 85.42 0.45 10.04 16 12 N -0.62 -29.95 3.01 -703.40 -2.12 -32.07 16 13 C -0.25 -13.70 9.73 84.03 0.82 -12.88 16 14 H 0.07 3.64 7.85 -2.91 -0.02 3.62 16 15 C -0.06 -3.07 5.12 84.86 0.43 -2.63 16 16 N -0.94 -54.64 10.82 21.65 0.23 -54.41 16 17 Si 0.97 44.48 29.57 68.60 2.03 46.51 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 C 0.14 5.25 6.58 86.25 0.57 5.82 16 22 C -0.08 -2.54 5.94 29.65 0.18 -2.37 16 23 C 0.13 3.19 5.64 43.52 0.25 3.44 16 24 C 0.02 0.35 0.75 -52.93 -0.04 0.31 16 25 C -0.14 -3.40 8.18 71.98 0.59 -2.81 16 26 C -0.13 -2.51 7.95 71.98 0.57 -1.94 16 27 C -0.14 -3.36 8.27 71.98 0.60 -2.77 16 28 N -0.32 -7.44 11.80 -46.68 -0.55 -8.00 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.22 1.57 7.51 -2.91 -0.02 1.55 16 33 H 0.41 7.34 7.43 -92.71 -0.69 6.65 16 34 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 35 H 0.06 1.70 7.78 -2.39 -0.02 1.68 16 36 H 0.11 3.58 7.73 -2.91 -0.02 3.56 16 37 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.06 3.28 6.27 -2.39 -0.01 3.26 16 39 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 45 H 0.07 1.41 8.12 -2.38 -0.02 1.39 16 46 H 0.07 2.01 4.50 -2.39 -0.01 2.00 16 47 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 49 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 2.24 4.77 -2.39 -0.01 2.23 16 51 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -71.18 407.90 3.68 -67.50 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.23 Total: 20.12 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 7.97 Total: 3.15 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -6.50 Total: -120.35 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.04 Total: -16.93 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.18 3.68 -67.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001274318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.712 kcal (2) G-P(sol) polarization free energy of solvation -71.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds