Wall clock time and date at job start Wed Apr 1 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46774 * 2 1 4 4 C 1.50702 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.38050 * 126.29397 * 270.20984 * 4 3 2 6 6 C 1.47422 * 126.41184 * 0.02562 * 5 4 3 7 7 O 1.21598 * 120.00456 * 0.32176 * 6 5 4 8 8 N 1.34781 * 119.99586 * 180.32633 * 6 5 4 9 9 C 1.46502 * 119.99837 * 179.97438 * 8 6 5 10 10 H 1.09003 * 115.55240 * 350.68812 * 9 8 6 11 11 C 1.53028 * 117.50100 * 136.41611 * 9 8 6 12 12 C 1.52816 * 117.50328 * 204.99898 * 9 8 6 13 13 C 1.53184 * 117.71421 * 144.90004 * 12 9 8 14 14 C 1.53346 * 108.76955 * 158.88991 * 13 12 9 15 15 N 1.46842 * 108.81759 * 51.30979 * 14 13 12 16 16 C 1.36927 * 120.38478 * 123.12065 * 15 14 13 17 17 H 1.08003 * 120.00211 * 208.88757 * 16 15 14 18 18 C 1.38817 * 120.00470 * 28.88779 * 16 15 14 19 19 N 1.31618 * 119.99404 * 17.85007 * 18 16 15 20 20 Si 1.86794 * 120.00301 * 197.85415 * 18 16 15 21 21 H 1.48501 * 109.47438 * 89.99588 * 20 18 16 22 22 H 1.48494 * 109.47177 * 209.99829 * 20 18 16 23 23 H 1.48506 * 109.47220 * 329.99660 * 20 18 16 24 24 C 1.46852 * 119.23201 * 303.09865 * 15 14 13 25 25 C 1.53182 * 117.71337 * 0.14294 * 12 9 8 26 26 C 1.41291 * 107.17012 * 180.25624 * 5 4 3 27 27 N 1.30449 * 108.02447 * 359.74641 * 26 5 4 28 28 N 1.34264 * 126.29305 * 90.02622 * 4 3 2 29 29 C 1.46506 * 125.74799 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.46849 * 60.00133 * 1 2 3 31 31 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47111 * 300.00042 * 1 2 3 33 33 H 1.08998 * 109.47372 * 240.00696 * 2 1 3 34 34 H 1.08995 * 109.47266 * 119.99940 * 2 1 3 35 35 H 1.09000 * 109.47419 * 60.00641 * 3 2 1 36 36 H 1.09004 * 109.47761 * 299.99856 * 3 2 1 37 37 H 0.96998 * 120.00116 * 0.02562 * 8 6 5 38 38 H 1.09004 * 117.50158 * 214.95794 * 11 9 8 39 39 H 1.08994 * 117.50440 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.58603 * 278.67561 * 13 12 9 41 41 H 1.09001 * 109.58632 * 39.09931 * 13 12 9 42 42 H 1.08998 * 109.57892 * 291.50382 * 14 13 12 43 43 H 1.09003 * 109.57933 * 171.10517 * 14 13 12 44 44 H 0.96995 * 119.99736 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.58129 * 297.10944 * 24 15 14 46 46 H 1.08991 * 109.58284 * 176.70265 * 24 15 14 47 47 H 1.09001 * 109.58649 * 320.89948 * 25 12 9 48 48 H 1.09000 * 109.59060 * 81.32778 * 25 12 9 49 49 H 1.07995 * 125.99100 * 179.71034 * 26 5 4 50 50 H 1.08997 * 109.47277 * 269.71995 * 29 28 4 51 51 H 1.09004 * 109.46661 * 149.71668 * 29 28 4 52 52 H 1.09003 * 109.47012 * 29.72349 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4387 1.1136 6 6 3.9248 1.4332 2.5210 7 8 2.7385 1.4258 2.7880 8 7 4.8385 1.4365 3.5118 9 6 4.4025 1.4316 4.9104 10 1 3.3352 1.5846 5.0707 11 6 5.1360 0.4982 5.8760 12 6 5.3621 2.0079 5.9508 13 6 4.7559 2.7597 7.1399 14 6 5.7785 2.7826 8.2824 15 7 7.0600 3.2746 7.7612 16 6 7.6608 4.3702 8.3214 17 1 8.2950 5.0048 7.7202 18 6 7.4547 4.6653 9.6621 19 7 6.9909 3.7404 10.4756 20 14 7.8353 6.3748 10.3114 21 1 6.6267 7.2296 10.1937 22 1 8.2404 6.2839 11.7372 23 1 8.9416 6.9702 9.5196 24 6 7.6902 2.5779 6.6325 25 6 6.7064 2.5510 5.4565 26 6 5.6988 1.4465 0.6514 27 7 5.6743 1.4489 -0.6529 28 7 4.3421 1.4430 -1.0812 29 6 3.8910 1.4429 -2.4751 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 5.7848 1.4429 3.2988 38 1 4.5512 0.0367 6.6718 39 1 5.9432 -0.1119 5.4708 40 1 4.5167 3.7809 6.8430 41 1 3.8500 2.2513 7.4702 42 1 5.9074 1.7749 8.6774 43 1 5.4274 3.4450 9.0736 44 1 6.8466 3.9466 11.4123 45 1 7.9375 1.5574 6.9252 46 1 8.5973 3.1055 6.3379 47 1 7.0948 1.9041 4.6698 48 1 6.5723 3.5609 5.0690 49 1 6.5843 1.4503 1.2694 50 1 3.7843 0.4152 -2.8224 51 1 4.6233 1.9614 -3.0939 52 1 2.9298 1.9520 -2.5459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016709851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:55 Heat of formation + Delta-G solvation = 72.754320 kcal Electronic energy + Delta-G solvation = -30656.052670 eV Core-core repulsion = 26658.079417 eV Total energy + Delta-G solvation = -3997.973254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -41.76264 -39.60855 -38.12211 -35.68187 -35.30743 -33.70127 -32.86355 -31.55346 -30.86319 -29.96215 -28.34858 -27.42520 -26.82638 -24.31211 -23.34214 -22.41720 -22.05308 -21.75351 -20.94570 -20.18398 -19.74915 -18.17374 -17.76519 -16.56134 -16.08531 -15.96509 -15.90870 -15.20409 -14.89122 -14.75026 -14.56182 -14.16973 -14.04712 -13.78848 -13.48076 -13.40543 -13.33067 -13.13998 -13.02192 -12.91816 -12.62008 -12.50510 -12.18083 -11.80183 -11.60125 -11.58460 -11.54804 -11.27641 -11.21610 -10.93000 -10.86396 -10.72066 -10.39366 -10.27471 -9.93023 -9.84720 -9.70212 -9.63061 -9.57330 -9.29230 -8.89644 -8.42108 -8.31121 -6.61102 -5.76062 -3.19194 1.28232 1.96705 2.01814 3.26758 3.38885 3.40198 3.47037 3.47849 4.11520 4.14859 4.28717 4.52217 4.52580 4.62644 4.69810 4.75362 4.90057 4.92385 4.99902 5.06061 5.15252 5.20672 5.22164 5.26122 5.41839 5.42056 5.50830 5.54923 5.58835 5.68397 5.78281 5.92667 5.98180 5.99477 6.11716 6.12374 6.14023 6.20913 6.33894 6.49056 6.53169 6.65062 6.69618 6.70253 6.74794 6.88945 7.00821 7.26754 7.40812 7.65668 7.70864 7.82569 8.36554 8.49509 9.24828 9.88484 10.45189 11.31578 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.002178 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.867912 B =12851.698441 C =13512.001281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.065 4.065 4 C 0.160 3.840 5 C -0.293 4.293 6 C 0.598 3.402 7 O -0.549 6.549 8 N -0.692 5.692 9 C 0.074 3.926 10 H 0.132 0.868 11 C -0.183 4.183 12 C -0.098 4.098 13 C -0.105 4.105 14 C 0.173 3.827 15 N -0.589 5.589 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.150 3.850 25 C -0.097 4.097 26 C 0.084 3.916 27 N -0.298 5.298 28 N -0.364 5.364 29 C 0.096 3.904 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.398 0.602 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.018 0.982 43 H 0.090 0.910 44 H 0.253 0.747 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.190 0.810 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.543 -8.006 -24.788 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.104 4.104 4 C 0.028 3.972 5 C -0.308 4.308 6 C 0.386 3.614 7 O -0.428 6.428 8 N -0.340 5.340 9 C -0.032 4.032 10 H 0.150 0.850 11 C -0.222 4.222 12 C -0.099 4.099 13 C -0.144 4.144 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.023 3.977 25 C -0.136 4.136 26 C -0.104 4.104 27 N -0.117 5.117 28 N -0.143 5.143 29 C -0.045 4.045 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.206 0.794 50 H 0.097 0.903 51 H 0.112 0.888 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.708 -7.987 -25.661 28.575 hybrid contribution 0.396 0.773 0.946 1.284 sum -9.312 -7.214 -24.715 27.378 Atomic orbital electron populations 1.21738 0.94936 1.01922 1.02105 1.21378 0.96338 0.94841 1.02367 1.20574 0.85681 0.99273 1.04896 1.21521 0.94604 0.94862 0.86225 1.20009 0.92808 1.24380 0.93608 1.17118 0.85463 0.75420 0.83438 1.90710 1.16455 1.51447 1.84199 1.45148 1.09356 1.74573 1.04965 1.21860 0.98180 1.05470 0.77651 0.85010 1.23529 1.03091 0.93802 1.01770 1.21950 0.96434 0.94302 0.97218 1.21869 0.98493 0.98670 0.95412 1.20764 0.83729 0.98018 0.92793 1.43973 1.19732 1.32034 1.35422 1.19193 1.26690 1.00684 0.91633 0.91806 1.25046 1.01115 0.97787 0.95709 1.70036 1.49627 1.31162 1.03717 0.86311 0.78085 0.84597 0.77911 1.21448 1.21819 1.20465 1.20842 0.93549 0.95462 0.87853 1.21620 0.93976 0.99708 0.98321 1.24045 0.97294 0.97040 0.92021 1.77197 0.95938 1.25309 1.13264 1.48345 1.04095 1.55489 1.06332 1.21960 1.01326 1.03822 0.77405 0.92901 0.92502 0.91948 0.92667 0.90879 0.86868 0.90853 0.76653 0.88412 0.89123 0.92162 0.93040 0.96376 0.89224 0.93654 0.96321 0.92781 0.93658 0.91758 0.79360 0.90271 0.88825 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.11 -0.90 5.92 -26.73 -0.16 -1.06 16 3 C -0.07 -0.57 4.89 -27.88 -0.14 -0.71 16 4 C 0.16 1.70 6.26 -81.60 -0.51 1.19 16 5 C -0.29 -3.54 6.13 -105.07 -0.64 -4.19 16 6 C 0.60 8.32 7.81 -12.52 -0.10 8.22 16 7 O -0.55 -8.93 14.41 5.28 0.08 -8.86 16 8 N -0.69 -9.02 5.34 -54.96 -0.29 -9.31 16 9 C 0.07 1.09 6.14 -68.01 -0.42 0.67 16 10 H 0.13 2.09 7.40 -51.93 -0.38 1.71 16 11 C -0.18 -2.67 9.86 -26.80 -0.26 -2.94 16 12 C -0.10 -1.61 1.94 -154.50 -0.30 -1.91 16 13 C -0.10 -2.01 5.83 -26.46 -0.15 -2.16 16 14 C 0.17 4.08 5.40 -3.68 -0.02 4.06 16 15 N -0.59 -14.58 2.94 -172.26 -0.51 -15.09 16 16 C -0.25 -6.88 9.54 -15.06 -0.14 -7.03 16 17 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 18 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 19 N -0.90 -26.08 11.23 55.49 0.62 -25.46 16 20 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.15 3.06 6.52 -3.67 -0.02 3.04 16 25 C -0.10 -1.60 5.37 -26.46 -0.14 -1.75 16 26 C 0.08 0.90 11.50 -16.98 -0.20 0.71 16 27 N -0.30 -3.41 12.50 30.86 0.39 -3.03 16 28 N -0.36 -3.49 3.98 -63.33 -0.25 -3.74 16 29 C 0.10 0.48 11.25 59.85 0.67 1.16 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.23 6.52 -51.93 -0.34 0.89 16 36 H 0.07 0.45 7.05 -51.93 -0.37 0.08 16 37 H 0.40 4.40 6.07 -40.82 -0.25 4.15 16 38 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 2.38 5.93 -51.93 -0.31 2.08 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 47 H 0.04 0.61 6.75 -51.93 -0.35 0.26 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.19 1.49 7.50 -52.49 -0.39 1.10 16 50 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 0.27 7.01 -51.93 -0.36 -0.09 16 LS Contribution 412.75 15.07 6.22 6.22 Total: -1.00 -33.06 412.75 -9.66 -42.72 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.63 Total: 3.24 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.25 Total: -3.37 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.04 Total: -56.63 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.06 -9.66 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016709851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.472 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds