Wall clock time and date at job start Wed Apr 1 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46774 * 2 1 4 4 C 1.50702 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.38050 * 126.29397 * 270.20984 * 4 3 2 6 6 C 1.47422 * 126.41184 * 0.02562 * 5 4 3 7 7 O 1.21598 * 120.00456 * 0.32176 * 6 5 4 8 8 N 1.34781 * 119.99586 * 180.32633 * 6 5 4 9 9 C 1.46502 * 119.99837 * 179.97438 * 8 6 5 10 10 H 1.09003 * 115.55240 * 350.68812 * 9 8 6 11 11 C 1.53028 * 117.50100 * 136.41611 * 9 8 6 12 12 C 1.52816 * 117.50328 * 204.99898 * 9 8 6 13 13 C 1.53184 * 117.71421 * 144.90004 * 12 9 8 14 14 C 1.53346 * 108.76955 * 158.88991 * 13 12 9 15 15 N 1.46842 * 108.81759 * 51.30979 * 14 13 12 16 16 C 1.36927 * 120.38478 * 123.12065 * 15 14 13 17 17 H 1.08003 * 120.00211 * 208.88757 * 16 15 14 18 18 C 1.38817 * 120.00470 * 28.88779 * 16 15 14 19 19 N 1.31618 * 119.99404 * 17.85007 * 18 16 15 20 20 Si 1.86794 * 120.00301 * 197.85415 * 18 16 15 21 21 H 1.48501 * 109.47438 * 89.99588 * 20 18 16 22 22 H 1.48494 * 109.47177 * 209.99829 * 20 18 16 23 23 H 1.48506 * 109.47220 * 329.99660 * 20 18 16 24 24 C 1.46852 * 119.23201 * 303.09865 * 15 14 13 25 25 C 1.53182 * 117.71337 * 0.14294 * 12 9 8 26 26 C 1.41291 * 107.17012 * 180.25624 * 5 4 3 27 27 N 1.30449 * 108.02447 * 359.74641 * 26 5 4 28 28 N 1.34264 * 126.29305 * 90.02622 * 4 3 2 29 29 C 1.46506 * 125.74799 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.46849 * 60.00133 * 1 2 3 31 31 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47111 * 300.00042 * 1 2 3 33 33 H 1.08998 * 109.47372 * 240.00696 * 2 1 3 34 34 H 1.08995 * 109.47266 * 119.99940 * 2 1 3 35 35 H 1.09000 * 109.47419 * 60.00641 * 3 2 1 36 36 H 1.09004 * 109.47761 * 299.99856 * 3 2 1 37 37 H 0.96998 * 120.00116 * 0.02562 * 8 6 5 38 38 H 1.09004 * 117.50158 * 214.95794 * 11 9 8 39 39 H 1.08994 * 117.50440 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.58603 * 278.67561 * 13 12 9 41 41 H 1.09001 * 109.58632 * 39.09931 * 13 12 9 42 42 H 1.08998 * 109.57892 * 291.50382 * 14 13 12 43 43 H 1.09003 * 109.57933 * 171.10517 * 14 13 12 44 44 H 0.96995 * 119.99736 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.58129 * 297.10944 * 24 15 14 46 46 H 1.08991 * 109.58284 * 176.70265 * 24 15 14 47 47 H 1.09001 * 109.58649 * 320.89948 * 25 12 9 48 48 H 1.09000 * 109.59060 * 81.32778 * 25 12 9 49 49 H 1.07995 * 125.99100 * 179.71034 * 26 5 4 50 50 H 1.08997 * 109.47277 * 269.71995 * 29 28 4 51 51 H 1.09004 * 109.46661 * 149.71668 * 29 28 4 52 52 H 1.09003 * 109.47012 * 29.72349 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4387 1.1136 6 6 3.9248 1.4332 2.5210 7 8 2.7385 1.4258 2.7880 8 7 4.8385 1.4365 3.5118 9 6 4.4025 1.4316 4.9104 10 1 3.3352 1.5846 5.0707 11 6 5.1360 0.4982 5.8760 12 6 5.3621 2.0079 5.9508 13 6 4.7559 2.7597 7.1399 14 6 5.7785 2.7826 8.2824 15 7 7.0600 3.2746 7.7612 16 6 7.6608 4.3702 8.3214 17 1 8.2950 5.0048 7.7202 18 6 7.4547 4.6653 9.6621 19 7 6.9909 3.7404 10.4756 20 14 7.8353 6.3748 10.3114 21 1 6.6267 7.2296 10.1937 22 1 8.2404 6.2839 11.7372 23 1 8.9416 6.9702 9.5196 24 6 7.6902 2.5779 6.6325 25 6 6.7064 2.5510 5.4565 26 6 5.6988 1.4465 0.6514 27 7 5.6743 1.4489 -0.6529 28 7 4.3421 1.4430 -1.0812 29 6 3.8910 1.4429 -2.4751 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 5.7848 1.4429 3.2988 38 1 4.5512 0.0367 6.6718 39 1 5.9432 -0.1119 5.4708 40 1 4.5167 3.7809 6.8430 41 1 3.8500 2.2513 7.4702 42 1 5.9074 1.7749 8.6774 43 1 5.4274 3.4450 9.0736 44 1 6.8466 3.9466 11.4123 45 1 7.9375 1.5574 6.9252 46 1 8.5973 3.1055 6.3379 47 1 7.0948 1.9041 4.6698 48 1 6.5723 3.5609 5.0690 49 1 6.5843 1.4503 1.2694 50 1 3.7843 0.4152 -2.8224 51 1 4.6233 1.9614 -3.0939 52 1 2.9298 1.9520 -2.5459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016709851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:43 Heat of formation + Delta-G solvation = 53.159955 kcal Electronic energy + Delta-G solvation = -30656.902346 eV Core-core repulsion = 26658.079417 eV Total energy + Delta-G solvation = -3998.822929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 21.54 seconds Orbital eigenvalues (eV) -42.54047 -40.81969 -39.40547 -37.09144 -36.21933 -34.56390 -34.08398 -33.22822 -31.70872 -31.52110 -29.96246 -28.17345 -27.43408 -26.20907 -24.31637 -23.97885 -22.98804 -22.69221 -22.32776 -21.26672 -20.59697 -19.74991 -18.74553 -18.20612 -17.19231 -16.92534 -16.70972 -16.66236 -15.88030 -15.72660 -15.58768 -15.53867 -15.32689 -15.10240 -14.87169 -14.63054 -14.44940 -14.14753 -14.01077 -13.73392 -13.58059 -13.51380 -13.25822 -13.10102 -13.05593 -12.83829 -12.58092 -12.48273 -12.43803 -12.23044 -12.18830 -11.98198 -11.93745 -11.76103 -11.55112 -11.33670 -11.22896 -10.91217 -10.64938 -10.45166 -10.40886 -9.82018 -9.44199 -8.59971 -7.84259 -5.30353 0.47343 1.12729 1.38721 1.46940 1.49009 1.57133 2.22666 2.38729 2.52830 3.04276 3.30438 3.45743 3.49281 3.68227 3.84854 3.88515 3.92267 4.01035 4.04125 4.09824 4.17660 4.19813 4.33286 4.40725 4.47565 4.56482 4.60049 4.64771 4.68348 4.76532 4.80871 4.87655 4.89749 4.94043 4.96852 5.04587 5.06115 5.12457 5.19243 5.21349 5.32820 5.35251 5.38375 5.41426 5.42192 5.56263 5.63061 5.68164 5.80462 5.87378 6.43236 6.48183 6.66413 7.18415 7.33186 7.91190 8.42064 9.20635 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.002178 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.867912 B =12851.698441 C =13512.001281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.062 4.062 4 C 0.161 3.839 5 C -0.320 4.320 6 C 0.596 3.404 7 O -0.579 6.579 8 N -0.685 5.685 9 C 0.092 3.908 10 H 0.121 0.879 11 C -0.170 4.170 12 C -0.116 4.116 13 C -0.093 4.093 14 C 0.181 3.819 15 N -0.608 5.608 16 C -0.260 4.260 17 H 0.065 0.935 18 C -0.051 4.051 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.268 1.268 24 C 0.145 3.855 25 C -0.082 4.082 26 C 0.085 3.915 27 N -0.321 5.321 28 N -0.359 5.359 29 C 0.083 3.917 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.410 0.590 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.000 1.000 43 H 0.053 0.947 44 H 0.249 0.751 45 H 0.018 0.982 46 H 0.054 0.946 47 H 0.085 0.915 48 H 0.055 0.945 49 H 0.212 0.788 50 H 0.095 0.905 51 H 0.101 0.899 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.670 -8.387 -27.964 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.101 4.101 4 C 0.027 3.973 5 C -0.335 4.335 6 C 0.386 3.614 7 O -0.460 6.460 8 N -0.334 5.334 9 C -0.014 4.014 10 H 0.139 0.861 11 C -0.209 4.209 12 C -0.117 4.117 13 C -0.132 4.132 14 C 0.055 3.945 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.247 4.247 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.193 1.193 24 C 0.019 3.981 25 C -0.121 4.121 26 C -0.103 4.103 27 N -0.140 5.140 28 N -0.137 5.137 29 C -0.057 4.057 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.247 0.753 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.018 0.982 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.228 0.772 50 H 0.113 0.887 51 H 0.119 0.881 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.803 -8.374 -28.900 31.646 hybrid contribution 0.418 0.850 1.840 2.070 sum -9.385 -7.524 -27.060 29.613 Atomic orbital electron populations 1.21722 0.93973 1.02370 1.02372 1.21317 0.97107 0.94243 1.01690 1.20583 0.84604 0.99686 1.05201 1.21790 0.95378 0.93808 0.86333 1.19992 0.93920 1.26692 0.92910 1.17408 0.85064 0.74650 0.84261 1.90697 1.17704 1.52857 1.84729 1.45039 1.09950 1.74385 1.04038 1.21579 0.97164 1.04370 0.78324 0.86143 1.23607 1.03250 0.92508 1.01486 1.21797 0.96949 0.95700 0.97296 1.21619 0.97820 0.98775 0.95034 1.20525 0.84682 0.95759 0.93534 1.44240 1.20385 1.32147 1.36388 1.19507 1.26192 1.01558 0.91828 0.91776 1.25777 1.01807 1.01019 0.96069 1.70182 1.51254 1.32853 1.03635 0.85323 0.77982 0.80528 0.76975 1.21425 1.22191 1.19302 1.21011 0.94533 0.94757 0.87766 1.21442 0.92951 1.00292 0.97462 1.24402 0.97568 0.96209 0.92088 1.77153 0.97209 1.26077 1.13563 1.48685 1.03361 1.54126 1.07571 1.22391 1.02667 1.05415 0.75182 0.90888 0.91999 0.93405 0.91052 0.93765 0.89273 0.87765 0.75317 0.88194 0.87332 0.93472 0.91533 0.98225 0.92896 0.94167 0.96409 0.92744 0.89691 0.92609 0.77165 0.88650 0.88077 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.11 -1.54 5.92 30.59 0.18 -1.36 16 3 C -0.06 -0.97 4.89 29.85 0.15 -0.83 16 4 C 0.16 3.14 6.26 42.14 0.26 3.40 16 5 C -0.32 -7.31 6.13 -20.15 -0.12 -7.44 16 6 C 0.60 16.06 7.81 86.66 0.68 16.74 16 7 O -0.58 -18.80 14.41 -4.02 -0.06 -18.86 16 8 N -0.68 -16.60 5.34 -446.04 -2.38 -18.98 16 9 C 0.09 2.57 6.14 44.94 0.28 2.85 16 10 H 0.12 3.74 7.40 -2.39 -0.02 3.72 16 11 C -0.17 -4.61 9.86 30.55 0.30 -4.31 16 12 C -0.12 -3.68 1.94 -52.17 -0.10 -3.79 16 13 C -0.09 -3.59 5.83 30.77 0.18 -3.41 16 14 C 0.18 8.81 5.40 86.43 0.47 9.27 16 15 N -0.61 -30.58 2.94 -698.90 -2.05 -32.64 16 16 C -0.26 -14.43 9.54 84.04 0.80 -13.63 16 17 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 18 C -0.05 -2.90 4.88 84.86 0.41 -2.48 16 19 N -0.93 -55.78 11.23 21.65 0.24 -55.54 16 20 Si 0.96 45.44 29.59 68.60 2.03 47.47 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 C 0.14 5.82 6.52 86.43 0.56 6.39 16 25 C -0.08 -2.58 5.37 30.77 0.17 -2.42 16 26 C 0.08 1.66 11.50 85.65 0.99 2.65 16 27 N -0.32 -6.69 12.50 -56.28 -0.70 -7.39 16 28 N -0.36 -6.05 3.98 -354.28 -1.41 -7.46 16 29 C 0.08 0.57 11.25 127.77 1.44 2.01 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.90 6.52 -2.39 -0.02 1.89 16 36 H 0.10 0.95 7.05 -2.39 -0.02 0.93 16 37 H 0.41 7.92 6.07 -92.71 -0.56 7.36 16 38 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 42 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.05 2.95 5.93 -2.39 -0.01 2.93 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.05 2.14 7.92 -2.39 -0.02 2.12 16 47 H 0.08 1.99 6.75 -2.39 -0.02 1.97 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.21 2.79 7.50 -2.91 -0.02 2.77 16 50 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 52 H 0.11 0.24 7.01 -2.39 -0.02 0.22 16 Total: -1.00 -74.00 412.75 3.37 -70.63 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.35 Total: 20.19 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 7.35 Total: 2.58 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -6.30 Total: -122.01 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.06 Total: -18.86 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.00 3.37 -70.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016709851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.792 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.54 seconds