Wall clock time and date at job start Wed Apr 1 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46833 * 2 1 4 4 C 1.53001 * 109.47272 * 240.00139 * 2 1 3 5 5 C 1.50701 * 109.47300 * 119.99667 * 2 1 3 6 6 C 1.39671 * 126.06448 * 75.00336 * 5 2 1 7 7 C 1.38403 * 105.35679 * 180.02562 * 6 5 2 8 8 C 1.47167 * 126.88374 * 180.02562 * 7 6 5 9 9 O 1.21632 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00164 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00238 * 179.97438 * 10 8 7 12 12 H 1.08994 * 115.56517 * 350.70583 * 11 10 8 13 13 C 1.53030 * 117.50436 * 136.41904 * 11 10 8 14 14 C 1.52819 * 117.50227 * 205.00330 * 11 10 8 15 15 C 1.53180 * 117.71545 * 144.89872 * 14 11 10 16 16 C 1.53349 * 108.76892 * 158.87389 * 15 14 11 17 17 N 1.46844 * 108.81070 * 51.30871 * 16 15 14 18 18 C 1.36940 * 120.37606 * 123.11293 * 17 16 15 19 19 H 1.07998 * 119.99252 * 210.70125 * 18 17 16 20 20 C 1.38807 * 120.00375 * 30.69922 * 18 17 16 21 21 N 1.31622 * 120.00154 * 199.02082 * 20 18 17 22 22 Si 1.86801 * 119.99999 * 19.02201 * 20 18 17 23 23 H 1.48498 * 109.47059 * 272.96128 * 22 20 18 24 24 H 1.48503 * 109.47024 * 32.96369 * 22 20 18 25 25 H 1.48496 * 109.47060 * 152.95887 * 22 20 18 26 26 C 1.46839 * 119.24260 * 303.37541 * 17 16 15 27 27 C 1.52875 * 109.07233 * 56.58591 * 26 17 16 28 28 N 1.36594 * 106.23439 * 0.26132 * 7 6 5 29 29 H 0.96993 * 125.19194 * 179.74335 * 28 7 6 30 30 N 1.28450 * 109.61784 * 359.55261 * 28 7 6 31 31 H 1.08997 * 109.47366 * 299.99846 * 1 2 3 32 32 H 1.09003 * 109.47170 * 60.00519 * 1 2 3 33 33 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47354 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47511 * 299.99665 * 3 2 1 36 36 H 1.09004 * 109.47351 * 59.99862 * 3 2 1 37 37 H 1.09001 * 109.47120 * 299.99349 * 4 2 1 38 38 H 1.08997 * 109.47240 * 60.00232 * 4 2 1 39 39 H 1.09004 * 109.46792 * 179.97438 * 4 2 1 40 40 H 1.08003 * 127.32626 * 0.02562 * 6 5 2 41 41 H 0.97005 * 119.99738 * 0.02562 * 10 8 7 42 42 H 1.09005 * 117.50066 * 0.02562 * 13 11 10 43 43 H 1.09004 * 117.52941 * 214.94829 * 13 11 10 44 44 H 1.08998 * 109.59110 * 39.09114 * 15 14 11 45 45 H 1.08998 * 109.58959 * 278.65906 * 15 14 11 46 46 H 1.08999 * 109.58446 * 291.51445 * 16 15 14 47 47 H 1.08997 * 109.58512 * 171.10922 * 16 15 14 48 48 H 0.96999 * 120.00083 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.58204 * 176.42127 * 26 17 16 50 50 H 1.09000 * 109.58060 * 296.82863 * 26 17 16 51 51 H 1.08998 * 109.66431 * 189.04710 * 27 26 17 52 52 H 1.08996 * 109.44712 * 68.65348 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2305 6 6 2.0310 -2.0911 1.4410 7 6 2.5814 -2.2708 2.6981 8 6 2.8035 -3.5503 3.3905 9 8 2.4903 -4.5952 2.8525 10 7 3.3538 -3.5642 4.6206 11 6 3.5743 -4.8379 5.3101 12 1 3.1273 -5.7122 4.8373 13 6 4.9110 -5.0296 6.0300 14 6 3.6312 -4.8131 6.8370 15 6 3.0542 -6.0151 7.5910 16 6 3.6615 -6.0526 8.9986 17 7 3.5001 -4.7315 9.6192 18 6 2.8442 -4.6034 10.8145 19 1 2.2962 -3.6994 11.0354 20 6 2.8837 -5.6353 11.7420 21 7 1.9835 -5.6935 12.7005 22 14 4.2144 -6.9415 11.6299 23 1 3.7680 -8.0260 10.7189 24 1 5.4618 -6.3332 11.1015 25 1 4.4712 -7.5036 12.9802 26 6 4.0450 -3.5488 8.9406 27 6 3.4508 -3.4614 7.5348 28 7 2.8724 -1.0222 3.1696 29 1 3.2674 -0.8292 4.0341 30 7 2.5468 -0.1430 2.2916 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.6768 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 1.6759 -2.8560 0.7663 41 1 3.6032 -2.7308 5.0498 42 1 5.6262 -4.2079 5.9909 43 1 5.3437 -6.0301 6.0310 44 1 3.3045 -6.9338 7.0606 45 1 1.9711 -5.9158 7.6629 46 1 4.7215 -6.2981 8.9328 47 1 3.1473 -6.8033 9.5986 48 1 2.0113 -6.4145 13.3488 49 1 3.7830 -2.6522 9.5024 50 1 5.1294 -3.6348 8.8710 51 1 3.9644 -2.6856 6.9671 52 1 2.3891 -3.2246 7.6037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016709900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:50 Heat of formation + Delta-G solvation = 74.454884 kcal Electronic energy + Delta-G solvation = -30404.373825 eV Core-core repulsion = 26406.474314 eV Total energy + Delta-G solvation = -3997.899512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.93104 -40.09828 -38.60723 -37.27081 -35.86673 -33.49908 -31.88789 -31.35951 -30.91153 -30.57271 -28.74639 -27.59867 -27.55512 -24.32938 -24.27365 -23.10424 -23.09832 -21.73272 -21.11696 -20.84351 -19.43042 -18.78245 -18.43450 -16.75144 -16.39001 -16.12000 -16.07354 -15.43486 -15.11348 -14.81280 -14.56190 -14.32281 -14.21808 -14.06929 -14.02442 -13.79126 -13.69243 -13.05638 -13.00467 -12.62129 -12.48045 -12.40194 -12.23642 -11.99980 -11.97043 -11.79780 -11.69133 -11.43074 -11.37271 -11.33077 -10.87636 -10.82753 -10.69827 -10.42048 -10.38335 -10.06907 -9.86430 -9.65176 -9.50265 -9.49264 -9.43177 -8.86062 -8.54836 -6.97363 -5.99332 -3.38553 0.94269 2.23207 2.43280 2.68222 2.91019 3.27594 3.44769 3.47830 3.91686 4.00951 4.30968 4.42937 4.48687 4.66746 4.67114 4.79722 4.82041 4.86153 4.95246 5.03665 5.16134 5.20347 5.30946 5.31375 5.36346 5.40360 5.47981 5.58464 5.59227 5.59737 5.72514 5.75737 5.79820 5.80830 5.82015 5.96606 5.98673 6.01975 6.06511 6.15283 6.22826 6.24491 6.28276 6.36207 6.53321 6.59284 6.62285 6.64813 6.87511 7.12941 7.64800 7.82983 7.95397 8.29788 8.90752 9.67547 10.05902 11.16639 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.002011 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.737723 B =13923.415069 C =14374.437756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.039 3.961 6 C -0.146 4.146 7 C -0.035 4.035 8 C 0.593 3.407 9 O -0.520 6.520 10 N -0.692 5.692 11 C 0.073 3.927 12 H 0.138 0.862 13 C -0.182 4.182 14 C -0.099 4.099 15 C -0.099 4.099 16 C 0.129 3.871 17 N -0.604 5.604 18 C -0.263 4.263 19 H 0.083 0.917 20 C 0.025 3.975 21 N -0.908 5.908 22 Si 0.886 3.114 23 H -0.285 1.285 24 H -0.273 1.273 25 H -0.303 1.303 26 C 0.153 3.847 27 C -0.099 4.099 28 N -0.380 5.380 29 H 0.444 0.556 30 N -0.262 5.262 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.163 0.837 41 H 0.396 0.604 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.025 0.975 47 H 0.076 0.924 48 H 0.263 0.737 49 H 0.064 0.936 50 H 0.023 0.977 51 H 0.047 0.953 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 10.728 -26.017 28.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.175 4.175 7 C -0.164 4.164 8 C 0.378 3.622 9 O -0.394 6.394 10 N -0.342 5.342 11 C -0.032 4.032 12 H 0.155 0.845 13 C -0.220 4.220 14 C -0.101 4.101 15 C -0.138 4.138 16 C 0.003 3.997 17 N -0.327 5.327 18 C -0.392 4.392 19 H 0.101 0.899 20 C -0.174 4.174 21 N -0.550 5.550 22 Si 0.716 3.284 23 H -0.213 1.213 24 H -0.198 1.198 25 H -0.231 1.231 26 C 0.027 3.973 27 C -0.138 4.138 28 N -0.096 5.096 29 H 0.289 0.711 30 N -0.095 5.095 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.181 0.819 41 H 0.230 0.770 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.041 0.959 51 H 0.065 0.935 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.330 10.891 -25.773 28.076 hybrid contribution 0.961 -1.100 0.536 1.556 sum 3.292 9.791 -25.237 27.269 Atomic orbital electron populations 1.21880 0.93193 1.02434 1.02159 1.18921 0.95488 0.94843 0.89273 1.21775 1.01266 0.94244 1.01989 1.21890 1.01376 1.00541 0.95946 1.21927 1.02903 0.91583 0.95544 1.21990 1.03639 0.96563 0.95292 1.21731 1.10428 0.86395 0.97807 1.16940 0.77639 0.86828 0.80774 1.90843 1.50906 1.31766 1.65880 1.45263 1.62791 1.09387 1.16735 1.21924 1.01502 0.87397 0.92342 0.84452 1.23588 0.91347 1.03386 1.03704 1.21953 0.99530 0.98589 0.90017 1.21697 1.00996 0.93954 0.97175 1.21368 0.97366 0.89137 0.91825 1.44253 1.65437 1.01055 1.21939 1.18895 1.24451 1.04801 0.91018 0.89929 1.25361 0.97876 0.98398 0.95788 1.69822 1.33739 1.33460 1.18017 0.86945 0.84180 0.81736 0.75505 1.21315 1.19772 1.23136 1.20763 0.95017 0.91106 0.90463 1.21558 1.01688 0.92564 0.98037 1.43626 1.46630 1.02880 1.16414 0.71129 1.73094 1.16560 1.19801 1.00042 0.92398 0.91835 0.92148 0.92506 0.92385 0.91961 0.92030 0.91810 0.92386 0.81919 0.76954 0.88793 0.88024 0.92411 0.91010 0.95675 0.90565 0.92698 0.91724 0.95879 0.93469 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.46 37.16 0.31 -0.60 16 2 C 0.02 0.12 0.96 -155.66 -0.15 -0.03 16 3 C -0.14 -0.93 8.04 37.16 0.30 -0.64 16 4 C -0.14 -0.86 8.20 37.16 0.30 -0.55 16 5 C 0.04 0.37 5.65 -82.47 -0.47 -0.09 16 6 C -0.15 -1.52 10.12 -38.99 -0.39 -1.91 16 7 C -0.04 -0.38 7.16 -82.06 -0.59 -0.97 16 8 C 0.59 7.37 7.80 -12.64 -0.10 7.27 16 9 O -0.52 -8.22 16.48 5.25 0.09 -8.13 16 10 N -0.69 -7.52 5.34 -55.04 -0.29 -7.81 16 11 C 0.07 0.93 6.14 -68.01 -0.42 0.51 16 12 H 0.14 1.89 7.40 -51.93 -0.38 1.51 16 13 C -0.18 -2.21 9.86 -26.80 -0.26 -2.48 16 14 C -0.10 -1.42 1.94 -154.50 -0.30 -1.72 16 15 C -0.10 -1.67 5.83 -26.46 -0.15 -1.83 16 16 C 0.13 2.69 4.23 -3.67 -0.02 2.67 16 17 N -0.60 -13.72 2.68 -172.55 -0.46 -14.18 16 18 C -0.26 -7.17 9.99 -15.06 -0.15 -7.32 16 19 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 20 C 0.03 0.71 5.24 -17.43 -0.09 0.62 16 21 N -0.91 -27.47 13.97 55.49 0.78 -26.69 16 22 Si 0.89 22.03 24.44 -169.99 -4.15 17.88 16 23 H -0.29 -6.78 6.39 56.52 0.36 -6.42 16 24 H -0.27 -6.70 7.02 56.52 0.40 -6.30 16 25 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 26 C 0.15 2.79 6.48 -3.92 -0.03 2.76 16 27 C -0.10 -1.43 5.36 -26.70 -0.14 -1.57 16 28 N -0.38 -3.37 6.85 33.48 0.23 -3.14 16 29 H 0.44 2.64 8.22 -190.46 -1.57 1.07 16 30 N -0.26 -2.65 11.48 33.64 0.39 -2.26 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.06 0.37 7.60 -51.93 -0.39 -0.02 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.16 1.56 7.79 -52.48 -0.41 1.15 16 41 H 0.40 3.32 6.30 -40.82 -0.26 3.06 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 0.86 8.10 -51.93 -0.42 0.43 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 47 H 0.08 1.77 4.36 -51.93 -0.23 1.55 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 49 H 0.06 1.18 7.92 -51.93 -0.41 0.77 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.05 0.51 6.75 -51.93 -0.35 0.16 16 52 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -32.93 407.26 -9.54 -42.46 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -9.90 Total: 1.60 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.34 Total: -5.87 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.63 Total: -54.08 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.93 -9.54 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016709900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.920 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds