Wall clock time and date at job start Wed Apr 1 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46833 * 2 1 4 4 C 1.53001 * 109.47272 * 240.00139 * 2 1 3 5 5 C 1.50701 * 109.47300 * 119.99667 * 2 1 3 6 6 C 1.39671 * 126.06448 * 75.00336 * 5 2 1 7 7 C 1.38403 * 105.35679 * 180.02562 * 6 5 2 8 8 C 1.47167 * 126.88374 * 180.02562 * 7 6 5 9 9 O 1.21632 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00164 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00238 * 179.97438 * 10 8 7 12 12 H 1.08994 * 115.56517 * 350.70583 * 11 10 8 13 13 C 1.53030 * 117.50436 * 136.41904 * 11 10 8 14 14 C 1.52819 * 117.50227 * 205.00330 * 11 10 8 15 15 C 1.53180 * 117.71545 * 144.89872 * 14 11 10 16 16 C 1.53349 * 108.76892 * 158.87389 * 15 14 11 17 17 N 1.46844 * 108.81070 * 51.30871 * 16 15 14 18 18 C 1.36940 * 120.37606 * 123.11293 * 17 16 15 19 19 H 1.07998 * 119.99252 * 210.70125 * 18 17 16 20 20 C 1.38807 * 120.00375 * 30.69922 * 18 17 16 21 21 N 1.31622 * 120.00154 * 199.02082 * 20 18 17 22 22 Si 1.86801 * 119.99999 * 19.02201 * 20 18 17 23 23 H 1.48498 * 109.47059 * 272.96128 * 22 20 18 24 24 H 1.48503 * 109.47024 * 32.96369 * 22 20 18 25 25 H 1.48496 * 109.47060 * 152.95887 * 22 20 18 26 26 C 1.46839 * 119.24260 * 303.37541 * 17 16 15 27 27 C 1.52875 * 109.07233 * 56.58591 * 26 17 16 28 28 N 1.36594 * 106.23439 * 0.26132 * 7 6 5 29 29 H 0.96993 * 125.19194 * 179.74335 * 28 7 6 30 30 N 1.28450 * 109.61784 * 359.55261 * 28 7 6 31 31 H 1.08997 * 109.47366 * 299.99846 * 1 2 3 32 32 H 1.09003 * 109.47170 * 60.00519 * 1 2 3 33 33 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47354 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47511 * 299.99665 * 3 2 1 36 36 H 1.09004 * 109.47351 * 59.99862 * 3 2 1 37 37 H 1.09001 * 109.47120 * 299.99349 * 4 2 1 38 38 H 1.08997 * 109.47240 * 60.00232 * 4 2 1 39 39 H 1.09004 * 109.46792 * 179.97438 * 4 2 1 40 40 H 1.08003 * 127.32626 * 0.02562 * 6 5 2 41 41 H 0.97005 * 119.99738 * 0.02562 * 10 8 7 42 42 H 1.09005 * 117.50066 * 0.02562 * 13 11 10 43 43 H 1.09004 * 117.52941 * 214.94829 * 13 11 10 44 44 H 1.08998 * 109.59110 * 39.09114 * 15 14 11 45 45 H 1.08998 * 109.58959 * 278.65906 * 15 14 11 46 46 H 1.08999 * 109.58446 * 291.51445 * 16 15 14 47 47 H 1.08997 * 109.58512 * 171.10922 * 16 15 14 48 48 H 0.96999 * 120.00083 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.58204 * 176.42127 * 26 17 16 50 50 H 1.09000 * 109.58060 * 296.82863 * 26 17 16 51 51 H 1.08998 * 109.66431 * 189.04710 * 27 26 17 52 52 H 1.08996 * 109.44712 * 68.65348 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2305 6 6 2.0310 -2.0911 1.4410 7 6 2.5814 -2.2708 2.6981 8 6 2.8035 -3.5503 3.3905 9 8 2.4903 -4.5952 2.8525 10 7 3.3538 -3.5642 4.6206 11 6 3.5743 -4.8379 5.3101 12 1 3.1273 -5.7122 4.8373 13 6 4.9110 -5.0296 6.0300 14 6 3.6312 -4.8131 6.8370 15 6 3.0542 -6.0151 7.5910 16 6 3.6615 -6.0526 8.9986 17 7 3.5001 -4.7315 9.6192 18 6 2.8442 -4.6034 10.8145 19 1 2.2962 -3.6994 11.0354 20 6 2.8837 -5.6353 11.7420 21 7 1.9835 -5.6935 12.7005 22 14 4.2144 -6.9415 11.6299 23 1 3.7680 -8.0260 10.7189 24 1 5.4618 -6.3332 11.1015 25 1 4.4712 -7.5036 12.9802 26 6 4.0450 -3.5488 8.9406 27 6 3.4508 -3.4614 7.5348 28 7 2.8724 -1.0222 3.1696 29 1 3.2674 -0.8292 4.0341 30 7 2.5468 -0.1430 2.2916 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.6768 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 1.6759 -2.8560 0.7663 41 1 3.6032 -2.7308 5.0498 42 1 5.6262 -4.2079 5.9909 43 1 5.3437 -6.0301 6.0310 44 1 3.3045 -6.9338 7.0606 45 1 1.9711 -5.9158 7.6629 46 1 4.7215 -6.2981 8.9328 47 1 3.1473 -6.8033 9.5986 48 1 2.0113 -6.4145 13.3488 49 1 3.7830 -2.6522 9.5024 50 1 5.1294 -3.6348 8.8710 51 1 3.9644 -2.6856 6.9671 52 1 2.3891 -3.2246 7.6037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016709900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:49 Heat of formation + Delta-G solvation = 52.912428 kcal Electronic energy + Delta-G solvation = -30405.307976 eV Core-core repulsion = 26406.474314 eV Total energy + Delta-G solvation = -3998.833663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.68583 -41.15824 -39.79216 -37.84448 -37.35735 -34.73106 -33.70880 -32.13538 -32.09920 -31.68148 -30.23078 -28.12194 -28.05766 -26.07177 -25.22956 -24.51695 -23.78518 -23.01223 -22.34007 -21.74913 -20.32358 -19.90254 -19.39171 -18.43603 -17.58225 -17.18528 -16.91241 -16.78661 -16.04199 -15.96606 -15.70253 -15.55664 -15.30885 -15.18948 -14.84809 -14.68401 -14.61180 -14.42810 -14.37816 -14.03049 -13.87920 -13.48802 -13.08553 -12.99116 -12.95204 -12.65287 -12.49196 -12.47815 -12.36126 -12.27802 -12.15381 -12.00972 -11.87457 -11.66933 -11.56886 -11.51424 -11.36960 -11.27124 -10.79965 -10.67212 -10.30426 -10.16137 -9.78006 -8.84220 -8.17335 -5.51616 0.09598 1.29768 1.40778 1.47987 1.50342 1.67426 1.83878 1.99903 2.41438 2.86783 3.07115 3.30952 3.35368 3.54120 3.66082 3.76176 3.80877 3.86777 3.98529 4.13838 4.19378 4.32689 4.35904 4.42802 4.50421 4.56194 4.67069 4.68911 4.78314 4.82198 4.85607 4.87105 4.90113 4.90743 4.96802 4.98792 5.08283 5.09119 5.09639 5.15934 5.19706 5.26907 5.27431 5.33530 5.47971 5.48500 5.49192 5.50666 5.89520 5.92334 6.13508 6.27216 6.86281 6.94738 6.95503 7.63633 8.04383 9.02718 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.002011 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.737723 B =13923.415069 C =14374.437756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.035 3.965 6 C -0.155 4.155 7 C -0.044 4.044 8 C 0.597 3.403 9 O -0.558 6.558 10 N -0.681 5.681 11 C 0.083 3.917 12 H 0.127 0.873 13 C -0.161 4.161 14 C -0.118 4.118 15 C -0.093 4.093 16 C 0.124 3.876 17 N -0.619 5.619 18 C -0.249 4.249 19 H 0.047 0.953 20 C -0.037 4.037 21 N -0.959 5.959 22 Si 0.950 3.050 23 H -0.270 1.270 24 H -0.262 1.262 25 H -0.313 1.313 26 C 0.146 3.854 27 C -0.088 4.088 28 N -0.367 5.367 29 H 0.456 0.544 30 N -0.272 5.272 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.166 0.834 41 H 0.410 0.590 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.038 0.962 47 H 0.047 0.953 48 H 0.261 0.739 49 H 0.055 0.945 50 H 0.040 0.960 51 H 0.091 0.909 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 11.383 -28.945 31.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 C -0.189 4.189 4 C -0.195 4.195 5 C -0.123 4.123 6 C -0.184 4.184 7 C -0.173 4.173 8 C 0.383 3.617 9 O -0.434 6.434 10 N -0.330 5.330 11 C -0.022 4.022 12 H 0.145 0.855 13 C -0.199 4.199 14 C -0.120 4.120 15 C -0.132 4.132 16 C 0.000 4.000 17 N -0.343 5.343 18 C -0.379 4.379 19 H 0.065 0.935 20 C -0.231 4.231 21 N -0.605 5.605 22 Si 0.779 3.221 23 H -0.196 1.196 24 H -0.187 1.187 25 H -0.242 1.242 26 C 0.021 3.979 27 C -0.127 4.127 28 N -0.085 5.085 29 H 0.303 0.697 30 N -0.105 5.105 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.184 0.816 41 H 0.247 0.753 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.109 0.891 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.299 11.591 -28.729 31.276 hybrid contribution 0.305 -1.191 1.396 1.860 sum 4.605 10.400 -27.334 29.606 Atomic orbital electron populations 1.21870 0.92641 1.02395 1.02545 1.19062 0.95904 0.95006 0.88848 1.21745 1.00800 0.93998 1.02360 1.21880 1.01009 1.00640 0.95979 1.22304 1.02450 0.91415 0.96087 1.22181 1.03644 0.97143 0.95448 1.21517 1.11377 0.86330 0.98039 1.17072 0.76935 0.86795 0.80873 1.90827 1.52595 1.33158 1.66862 1.45119 1.62139 1.09562 1.16214 1.21731 1.02082 0.87740 0.90692 0.85518 1.23703 0.90740 1.04787 1.00646 1.21792 1.02158 0.97188 0.90833 1.21536 0.99574 0.96640 0.95430 1.21378 0.97853 0.87385 0.93428 1.44397 1.65680 1.03258 1.20999 1.18836 1.23219 1.03124 0.92678 0.93478 1.26019 0.99930 1.01273 0.95914 1.69965 1.35900 1.34965 1.19664 0.85888 0.81466 0.79623 0.75116 1.19605 1.18674 1.24192 1.20970 0.95933 0.88932 0.92037 1.21405 1.00895 0.94223 0.96161 1.43634 1.46043 1.02029 1.16762 0.69655 1.73095 1.16851 1.20088 1.00449 0.93426 0.90035 0.92408 0.93151 0.90637 0.92969 0.92055 0.90117 0.92935 0.81625 0.75312 0.86671 0.87133 0.90055 0.93126 0.94428 0.93430 0.93022 0.92642 0.94193 0.89076 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.46 71.98 0.61 -0.98 16 2 C 0.01 0.18 0.96 -52.93 -0.05 0.13 16 3 C -0.13 -1.59 8.04 71.98 0.58 -1.02 16 4 C -0.14 -1.43 8.20 71.98 0.59 -0.84 16 5 C 0.04 0.63 5.65 43.05 0.24 0.87 16 6 C -0.15 -3.04 10.12 22.66 0.23 -2.81 16 7 C -0.04 -0.87 7.16 40.79 0.29 -0.58 16 8 C 0.60 13.75 7.80 86.59 0.68 14.43 16 9 O -0.56 -17.03 16.48 -4.13 -0.07 -17.10 16 10 N -0.68 -12.78 5.34 -446.30 -2.38 -15.17 16 11 C 0.08 1.85 6.14 44.94 0.28 2.12 16 12 H 0.13 3.20 7.40 -2.39 -0.02 3.19 16 13 C -0.16 -3.19 9.86 30.55 0.30 -2.88 16 14 C -0.12 -3.03 1.94 -52.17 -0.10 -3.13 16 15 C -0.09 -2.98 5.83 30.77 0.18 -2.80 16 16 C 0.12 5.03 4.23 86.43 0.37 5.39 16 17 N -0.62 -27.84 2.68 -699.84 -1.87 -29.72 16 18 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 19 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 20 C -0.04 -2.13 5.24 84.86 0.44 -1.69 16 21 N -0.96 -60.32 13.97 21.65 0.30 -60.02 16 22 Si 0.95 46.12 24.44 68.60 1.68 47.80 16 23 H -0.27 -12.24 6.39 99.48 0.64 -11.61 16 24 H -0.26 -12.12 7.02 99.48 0.70 -11.42 16 25 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 26 C 0.15 5.07 6.48 86.27 0.56 5.63 16 27 C -0.09 -2.30 5.36 30.61 0.16 -2.14 16 28 N -0.37 -5.77 6.85 -48.00 -0.33 -6.09 16 29 H 0.46 4.22 8.22 -220.01 -1.81 2.41 16 30 N -0.27 -5.04 11.48 -47.50 -0.55 -5.59 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.73 8.08 -2.38 -0.02 0.71 16 37 H 0.06 0.64 7.60 -2.39 -0.02 0.62 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.17 3.05 7.79 -2.91 -0.02 3.03 16 41 H 0.41 5.32 6.30 -92.70 -0.58 4.74 16 42 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 46 H 0.04 1.44 7.44 -2.39 -0.02 1.42 16 47 H 0.05 2.18 4.36 -2.39 -0.01 2.17 16 48 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16 50 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.09 1.58 6.75 -2.39 -0.02 1.56 16 52 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.97 407.26 1.43 -72.54 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -1.54 Total: 16.72 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.19 Total: -3.37 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.83 Total: -116.59 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.07 Total: -17.10 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.68 Total: 47.80 kcal Total: -73.97 1.43 -72.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016709900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.451 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds