Wall clock time and date at job start Wed Apr 1 2020 05:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46817 * 2 1 4 4 C 1.50697 * 109.47061 * 120.00326 * 2 1 3 5 5 C 1.39674 * 126.06640 * 274.99918 * 4 2 1 6 6 C 1.38410 * 105.35962 * 180.02562 * 5 4 2 7 7 C 1.47158 * 126.88746 * 180.02562 * 6 5 4 8 8 O 1.21620 * 120.00357 * 174.52010 * 7 6 5 9 9 N 1.34781 * 119.99635 * 354.52335 * 7 6 5 10 10 C 1.46499 * 120.00005 * 184.48135 * 9 7 6 11 11 H 1.09009 * 115.56232 * 350.69800 * 10 9 7 12 12 C 1.53029 * 117.50793 * 136.41058 * 10 9 7 13 13 C 1.52809 * 117.50394 * 204.99907 * 10 9 7 14 14 C 1.53185 * 117.71682 * 144.89549 * 13 10 9 15 15 C 1.53355 * 108.76534 * 158.87766 * 14 13 10 16 16 N 1.46835 * 108.81950 * 51.30744 * 15 14 13 17 17 C 1.36939 * 120.38392 * 123.10554 * 16 15 14 18 18 H 1.08003 * 119.99492 * 327.90335 * 17 16 15 19 19 C 1.38812 * 119.99970 * 147.90264 * 17 16 15 20 20 N 1.31614 * 119.99968 * 348.56319 * 19 17 16 21 21 Si 1.86794 * 119.99720 * 168.56625 * 19 17 16 22 22 H 1.48498 * 109.47161 * 269.99658 * 21 19 17 23 23 H 1.48500 * 109.47422 * 29.99543 * 21 19 17 24 24 H 1.48505 * 109.47164 * 149.99876 * 21 19 17 25 25 C 1.46848 * 119.23706 * 303.37974 * 16 15 14 26 26 C 1.52869 * 109.07667 * 56.58281 * 25 16 15 27 27 N 1.36597 * 106.22685 * 0.26129 * 6 5 4 28 28 C 1.46509 * 125.18901 * 179.73651 * 27 6 5 29 29 N 1.28446 * 109.62384 * 359.55642 * 27 6 5 30 30 H 1.08999 * 109.47517 * 299.99837 * 1 2 3 31 31 H 1.08998 * 109.47108 * 59.99895 * 1 2 3 32 32 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46797 * 240.00233 * 2 1 3 34 34 H 1.08998 * 109.46788 * 60.00344 * 3 2 1 35 35 H 1.09001 * 109.47044 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47367 * 299.99946 * 3 2 1 37 37 H 1.07997 * 127.32303 * 0.06013 * 5 4 2 38 38 H 0.96998 * 120.00149 * 4.46655 * 9 7 6 39 39 H 1.09006 * 117.50291 * 0.02562 * 12 10 9 40 40 H 1.09002 * 117.53170 * 214.94236 * 12 10 9 41 41 H 1.08995 * 109.59179 * 39.09336 * 14 13 10 42 42 H 1.09004 * 109.58624 * 278.65731 * 14 13 10 43 43 H 1.09000 * 109.57774 * 291.50930 * 15 14 13 44 44 H 1.08999 * 109.57638 * 171.10949 * 15 14 13 45 45 H 0.96999 * 119.99622 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.57662 * 176.41422 * 25 16 15 47 47 H 1.08992 * 109.58062 * 296.81778 * 25 16 15 48 48 H 1.08997 * 109.66779 * 189.04405 * 26 25 16 49 49 H 1.09004 * 109.44876 * 68.65221 * 26 25 16 50 50 H 1.08997 * 109.46361 * 92.86075 * 28 27 6 51 51 H 1.08992 * 109.47289 * 212.86759 * 28 27 6 52 52 H 1.09003 * 109.46596 * 332.86772 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6860 -1.1659 3.2934 7 6 3.0351 -1.0828 4.7206 8 8 3.3455 -2.0883 5.3303 9 7 3.0106 0.1077 5.3521 10 6 3.4520 0.2070 6.7454 11 1 3.6345 -0.7420 7.2498 12 6 4.3469 1.3903 7.1208 13 6 2.8906 1.3548 7.5835 14 6 2.6224 1.0884 9.0680 15 6 2.5851 2.4294 9.8110 16 7 1.6597 3.3315 9.1141 17 6 0.6000 3.8867 9.7806 18 1 0.1185 3.3412 10.5788 19 6 0.1448 5.1504 9.4302 20 7 0.8581 5.9063 8.6227 21 14 -1.4799 5.7780 10.1051 22 1 -2.5793 5.3981 9.1819 23 1 -1.7260 5.1781 11.4410 24 1 -1.4264 7.2570 10.2287 25 6 1.8800 3.6268 7.6926 26 6 1.9064 2.3150 6.9081 27 7 2.7682 -2.2691 2.4922 28 6 3.2288 -3.5920 2.9215 29 7 2.3766 -1.9707 1.3058 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 2.0249 0.8826 2.7823 38 1 2.7010 0.8988 4.8839 39 1 4.6068 2.0952 6.3310 40 1 5.1181 1.2203 7.8721 41 1 3.4181 0.4659 9.4771 42 1 1.6641 0.5813 9.1809 43 1 3.5829 2.8680 9.8233 44 1 2.2409 2.2711 10.8330 45 1 0.5401 6.7895 8.3782 46 1 1.0715 4.2564 7.3207 47 1 2.8327 4.1417 7.5698 48 1 2.2270 2.5063 5.8841 49 1 0.9096 1.8739 6.9047 50 1 2.3729 -4.1917 3.2311 51 1 3.7382 -4.0856 2.0940 52 1 3.9178 -3.4826 3.7590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016906985.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:19 Heat of formation + Delta-G solvation = 76.602761 kcal Electronic energy + Delta-G solvation = -30809.826814 eV Core-core repulsion = 26812.020441 eV Total energy + Delta-G solvation = -3997.806373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.77 seconds Orbital eigenvalues (eV) -42.77344 -39.89300 -38.36978 -36.20193 -35.51455 -33.54568 -32.45786 -31.69819 -30.71792 -30.16648 -28.24197 -27.40132 -26.96701 -24.38911 -24.14282 -22.95008 -22.48312 -21.61651 -20.87400 -20.36259 -19.47001 -18.28191 -17.90192 -16.58401 -16.52364 -16.42499 -15.80698 -15.11552 -14.81022 -14.65745 -14.46087 -14.29589 -14.14248 -13.80442 -13.60973 -13.52138 -13.40762 -13.04841 -12.82973 -12.71152 -12.65442 -12.33650 -12.28941 -11.76267 -11.65648 -11.55482 -11.43175 -11.41471 -11.36237 -10.97120 -10.78202 -10.72741 -10.51708 -10.31362 -10.21984 -9.99660 -9.75556 -9.60671 -9.41140 -9.33385 -9.07266 -8.53145 -8.48611 -6.60525 -5.80137 -3.28943 1.07471 2.15748 2.34700 3.01480 3.03528 3.35882 3.42937 3.43990 4.11498 4.13368 4.35152 4.47373 4.63171 4.77368 4.91163 4.93542 4.95528 5.07981 5.08260 5.09817 5.14749 5.28005 5.33225 5.39315 5.43390 5.43931 5.47977 5.60923 5.64193 5.69379 5.79340 5.80727 6.00669 6.02995 6.04342 6.08081 6.08409 6.25747 6.27608 6.41666 6.48902 6.52601 6.54183 6.61851 6.69180 6.81311 6.98395 7.31123 7.35278 7.66068 7.77705 7.86054 8.00129 8.47688 9.21556 9.83009 10.40914 11.27261 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.002645 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.150997 B =10583.944304 C =12265.282508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.009 4.009 3 C -0.145 4.145 4 C 0.033 3.967 5 C -0.181 4.181 6 C -0.034 4.034 7 C 0.594 3.406 8 O -0.545 6.545 9 N -0.677 5.677 10 C 0.068 3.932 11 H 0.134 0.866 12 C -0.180 4.180 13 C -0.094 4.094 14 C -0.098 4.098 15 C 0.149 3.851 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.063 0.937 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.174 3.826 26 C -0.106 4.106 27 N -0.258 5.258 28 C 0.086 3.914 29 N -0.277 5.277 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.160 0.840 38 H 0.405 0.595 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.020 0.980 44 H 0.055 0.945 45 H 0.254 0.746 46 H 0.091 0.909 47 H 0.018 0.982 48 H 0.044 0.956 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -13.229 -15.515 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 C -0.203 4.203 4 C -0.123 4.123 5 C -0.210 4.210 6 C -0.163 4.163 7 C 0.380 3.620 8 O -0.424 6.424 9 N -0.326 5.326 10 C -0.038 4.038 11 H 0.151 0.849 12 C -0.218 4.218 13 C -0.096 4.096 14 C -0.138 4.138 15 C 0.023 3.977 16 N -0.312 5.312 17 C -0.383 4.383 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.204 1.204 24 H -0.217 1.217 25 C 0.048 3.952 26 C -0.146 4.146 27 N -0.045 5.045 28 C -0.054 4.054 29 N -0.110 5.110 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.178 0.822 38 H 0.242 0.758 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.036 0.964 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.102 0.898 51 H 0.110 0.890 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.428 -14.910 -15.678 22.306 hybrid contribution -0.964 1.395 0.535 1.778 sum 4.464 -13.515 -15.142 20.782 Atomic orbital electron populations 1.21827 0.93866 1.02118 1.02287 1.19427 0.95699 0.95014 0.92772 1.21844 1.01340 0.94602 1.02507 1.21935 1.04042 0.89999 0.96338 1.22098 1.06457 0.99591 0.92864 1.21362 1.11771 0.89228 0.93932 1.16838 0.77314 0.83866 0.83994 1.90756 1.49559 1.34886 1.67161 1.45062 1.64786 1.09750 1.12955 1.21935 1.04317 0.95863 0.81656 0.84857 1.23556 0.94693 1.00213 1.03387 1.21980 0.94639 0.97133 0.95805 1.21706 1.00618 0.99690 0.91775 1.20866 0.93353 0.88833 0.94683 1.43914 1.28660 1.53058 1.05534 1.19197 1.06182 0.96677 1.16249 0.91910 1.25161 0.98955 0.95489 0.99795 1.69968 1.36975 1.09559 1.38301 0.86275 0.83689 0.77840 0.78852 1.21423 1.20416 1.21699 1.20654 1.00425 0.90915 0.83170 1.21769 0.97095 0.98600 0.97088 1.45517 1.44348 1.09646 1.04986 1.22346 1.01880 0.78818 1.02350 1.73113 1.17040 1.17796 1.03082 0.92141 0.91957 0.92620 0.89918 0.91922 0.92382 0.91858 0.82240 0.75800 0.88759 0.88270 0.92827 0.91807 0.96216 0.92640 0.93617 0.89089 0.96432 0.93774 0.92022 0.89766 0.89049 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.15 -1.06 8.79 37.16 0.33 -0.73 16 4 C 0.03 0.37 6.13 -82.47 -0.51 -0.13 16 5 C -0.18 -2.03 9.65 -38.98 -0.38 -2.41 16 6 C -0.03 -0.44 6.96 -82.06 -0.57 -1.01 16 7 C 0.59 8.21 7.78 -12.64 -0.10 8.11 16 8 O -0.55 -8.63 14.27 5.26 0.08 -8.56 16 9 N -0.68 -8.73 5.34 -55.05 -0.29 -9.02 16 10 C 0.07 0.94 6.15 -68.01 -0.42 0.53 16 11 H 0.13 1.94 7.39 -51.92 -0.38 1.56 16 12 C -0.18 -2.48 9.86 -26.80 -0.26 -2.74 16 13 C -0.09 -1.49 1.94 -154.50 -0.30 -1.79 16 14 C -0.10 -1.65 5.83 -26.45 -0.15 -1.80 16 15 C 0.15 3.03 6.52 -3.68 -0.02 3.00 16 16 N -0.59 -14.27 2.93 -172.55 -0.51 -14.77 16 17 C -0.25 -6.78 9.54 -15.06 -0.14 -6.93 16 18 H 0.06 1.67 7.85 -52.48 -0.41 1.25 16 19 C 0.00 0.13 5.02 -17.43 -0.09 0.04 16 20 N -0.90 -25.50 11.09 55.49 0.62 -24.88 16 21 Si 0.90 21.30 29.57 -169.99 -5.03 16.28 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.17 3.94 5.32 -3.92 -0.02 3.92 16 26 C -0.11 -1.87 5.36 -26.70 -0.14 -2.02 16 27 N -0.26 -3.17 3.75 -63.88 -0.24 -3.41 16 28 C 0.09 0.80 10.85 59.85 0.65 1.45 16 29 N -0.28 -3.48 11.90 33.64 0.40 -3.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.16 1.45 7.05 -52.49 -0.37 1.08 16 38 H 0.41 4.65 6.15 -40.82 -0.25 4.40 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.09 2.33 5.99 -51.93 -0.31 2.02 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.11 1.10 6.28 -51.93 -0.33 0.78 16 LS Contribution 411.56 15.07 6.20 6.20 Total: -1.00 -31.28 411.56 -9.55 -40.82 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.67 Total: 4.12 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.10 Total: -3.69 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.02 Total: -55.17 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.28 -9.55 -40.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016906985.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.427 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.78 seconds