Wall clock time and date at job start Wed Apr 1 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46817 * 2 1 4 4 C 1.50697 * 109.47061 * 120.00326 * 2 1 3 5 5 C 1.39674 * 126.06640 * 274.99918 * 4 2 1 6 6 C 1.38410 * 105.35962 * 180.02562 * 5 4 2 7 7 C 1.47158 * 126.88746 * 180.02562 * 6 5 4 8 8 O 1.21620 * 120.00357 * 174.52010 * 7 6 5 9 9 N 1.34781 * 119.99635 * 354.52335 * 7 6 5 10 10 C 1.46499 * 120.00005 * 184.48135 * 9 7 6 11 11 H 1.09009 * 115.56232 * 350.69800 * 10 9 7 12 12 C 1.53029 * 117.50793 * 136.41058 * 10 9 7 13 13 C 1.52809 * 117.50394 * 204.99907 * 10 9 7 14 14 C 1.53185 * 117.71682 * 144.89549 * 13 10 9 15 15 C 1.53355 * 108.76534 * 158.87766 * 14 13 10 16 16 N 1.46835 * 108.81950 * 51.30744 * 15 14 13 17 17 C 1.36939 * 120.38392 * 123.10554 * 16 15 14 18 18 H 1.08003 * 119.99492 * 327.90335 * 17 16 15 19 19 C 1.38812 * 119.99970 * 147.90264 * 17 16 15 20 20 N 1.31614 * 119.99968 * 348.56319 * 19 17 16 21 21 Si 1.86794 * 119.99720 * 168.56625 * 19 17 16 22 22 H 1.48498 * 109.47161 * 269.99658 * 21 19 17 23 23 H 1.48500 * 109.47422 * 29.99543 * 21 19 17 24 24 H 1.48505 * 109.47164 * 149.99876 * 21 19 17 25 25 C 1.46848 * 119.23706 * 303.37974 * 16 15 14 26 26 C 1.52869 * 109.07667 * 56.58281 * 25 16 15 27 27 N 1.36597 * 106.22685 * 0.26129 * 6 5 4 28 28 C 1.46509 * 125.18901 * 179.73651 * 27 6 5 29 29 N 1.28446 * 109.62384 * 359.55642 * 27 6 5 30 30 H 1.08999 * 109.47517 * 299.99837 * 1 2 3 31 31 H 1.08998 * 109.47108 * 59.99895 * 1 2 3 32 32 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46797 * 240.00233 * 2 1 3 34 34 H 1.08998 * 109.46788 * 60.00344 * 3 2 1 35 35 H 1.09001 * 109.47044 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47367 * 299.99946 * 3 2 1 37 37 H 1.07997 * 127.32303 * 0.06013 * 5 4 2 38 38 H 0.96998 * 120.00149 * 4.46655 * 9 7 6 39 39 H 1.09006 * 117.50291 * 0.02562 * 12 10 9 40 40 H 1.09002 * 117.53170 * 214.94236 * 12 10 9 41 41 H 1.08995 * 109.59179 * 39.09336 * 14 13 10 42 42 H 1.09004 * 109.58624 * 278.65731 * 14 13 10 43 43 H 1.09000 * 109.57774 * 291.50930 * 15 14 13 44 44 H 1.08999 * 109.57638 * 171.10949 * 15 14 13 45 45 H 0.96999 * 119.99622 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.57662 * 176.41422 * 25 16 15 47 47 H 1.08992 * 109.58062 * 296.81778 * 25 16 15 48 48 H 1.08997 * 109.66779 * 189.04405 * 26 25 16 49 49 H 1.09004 * 109.44876 * 68.65221 * 26 25 16 50 50 H 1.08997 * 109.46361 * 92.86075 * 28 27 6 51 51 H 1.08992 * 109.47289 * 212.86759 * 28 27 6 52 52 H 1.09003 * 109.46596 * 332.86772 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6860 -1.1659 3.2934 7 6 3.0351 -1.0828 4.7206 8 8 3.3455 -2.0883 5.3303 9 7 3.0106 0.1077 5.3521 10 6 3.4520 0.2070 6.7454 11 1 3.6345 -0.7420 7.2498 12 6 4.3469 1.3903 7.1208 13 6 2.8906 1.3548 7.5835 14 6 2.6224 1.0884 9.0680 15 6 2.5851 2.4294 9.8110 16 7 1.6597 3.3315 9.1141 17 6 0.6000 3.8867 9.7806 18 1 0.1185 3.3412 10.5788 19 6 0.1448 5.1504 9.4302 20 7 0.8581 5.9063 8.6227 21 14 -1.4799 5.7780 10.1051 22 1 -2.5793 5.3981 9.1819 23 1 -1.7260 5.1781 11.4410 24 1 -1.4264 7.2570 10.2287 25 6 1.8800 3.6268 7.6926 26 6 1.9064 2.3150 6.9081 27 7 2.7682 -2.2691 2.4922 28 6 3.2288 -3.5920 2.9215 29 7 2.3766 -1.9707 1.3058 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 2.0249 0.8826 2.7823 38 1 2.7010 0.8988 4.8839 39 1 4.6068 2.0952 6.3310 40 1 5.1181 1.2203 7.8721 41 1 3.4181 0.4659 9.4771 42 1 1.6641 0.5813 9.1809 43 1 3.5829 2.8680 9.8233 44 1 2.2409 2.2711 10.8330 45 1 0.5401 6.7895 8.3782 46 1 1.0715 4.2564 7.3207 47 1 2.8327 4.1417 7.5698 48 1 2.2270 2.5063 5.8841 49 1 0.9096 1.8739 6.9047 50 1 2.3729 -4.1917 3.2311 51 1 3.7382 -4.0856 2.0940 52 1 3.9178 -3.4826 3.7590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016906985.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:14 Heat of formation + Delta-G solvation = 59.043490 kcal Electronic energy + Delta-G solvation = -30810.588241 eV Core-core repulsion = 26812.020441 eV Total energy + Delta-G solvation = -3998.567800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 11.57 seconds Orbital eigenvalues (eV) -43.65268 -41.05626 -39.64517 -37.18951 -36.82208 -34.79864 -33.52993 -33.13240 -31.77884 -31.75315 -29.84591 -28.02797 -27.69566 -26.22910 -25.15174 -24.01234 -23.76465 -22.95233 -22.12912 -21.41767 -20.38890 -19.77563 -18.90820 -18.24206 -17.49992 -17.38723 -16.93836 -16.73953 -16.04054 -15.70246 -15.65072 -15.35124 -15.19660 -15.02831 -14.92031 -14.68423 -14.59361 -14.20470 -14.16145 -13.79668 -13.50247 -13.39659 -13.31084 -13.01066 -12.91431 -12.88043 -12.60788 -12.56193 -12.31617 -12.29984 -12.16292 -12.01059 -11.96878 -11.77729 -11.48804 -11.39494 -11.32186 -11.19572 -10.69421 -10.48687 -10.29191 -9.90424 -9.69671 -8.54288 -7.83329 -5.35108 0.11979 1.29268 1.47854 1.48432 1.48970 1.57465 2.00392 2.05490 2.52432 2.94963 3.31927 3.33384 3.40803 3.65793 3.81680 3.86285 3.88543 3.99457 4.13003 4.14809 4.24623 4.28035 4.31865 4.43333 4.53994 4.55201 4.57070 4.63672 4.71779 4.74383 4.88323 4.88518 4.89531 4.95962 5.03458 5.04146 5.07667 5.11488 5.19965 5.24104 5.32411 5.37943 5.41363 5.42752 5.45179 5.52311 5.57811 5.67887 5.69098 5.83546 6.29701 6.46192 6.91741 7.02410 7.20672 7.91288 8.42652 9.20823 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.002645 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.150997 B =10583.944304 C =12265.282508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.027 3.973 5 C -0.177 4.177 6 C -0.053 4.053 7 C 0.597 3.403 8 O -0.568 6.568 9 N -0.671 5.671 10 C 0.086 3.914 11 H 0.133 0.867 12 C -0.166 4.166 13 C -0.115 4.115 14 C -0.087 4.087 15 C 0.146 3.854 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.060 0.940 19 C -0.046 4.046 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.285 1.285 23 H -0.271 1.271 24 H -0.294 1.294 25 C 0.182 3.818 26 C -0.091 4.091 27 N -0.265 5.265 28 C 0.082 3.918 29 N -0.293 5.293 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.179 0.821 38 H 0.413 0.587 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.051 0.949 45 H 0.250 0.750 46 H 0.055 0.945 47 H -0.001 1.001 48 H 0.072 0.928 49 H 0.048 0.952 50 H 0.091 0.909 51 H 0.111 0.889 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -14.001 -16.520 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.129 4.129 5 C -0.206 4.206 6 C -0.182 4.182 7 C 0.383 3.617 8 O -0.448 6.448 9 N -0.321 5.321 10 C -0.020 4.020 11 H 0.151 0.849 12 C -0.204 4.204 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.020 3.980 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.078 0.922 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.196 1.196 24 H -0.220 1.220 25 C 0.056 3.944 26 C -0.130 4.130 27 N -0.052 5.052 28 C -0.057 4.057 29 N -0.126 5.126 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.196 0.804 38 H 0.251 0.749 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.018 0.982 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.109 0.891 51 H 0.130 0.870 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.750 -15.704 -16.685 23.624 hybrid contribution -1.033 1.605 0.838 2.085 sum 4.718 -14.099 -15.847 21.729 Atomic orbital electron populations 1.21806 0.93359 1.01655 1.02972 1.19537 0.96034 0.95562 0.91723 1.21836 1.01125 0.93730 1.03329 1.22419 1.03483 0.89741 0.97267 1.22390 1.05428 1.00187 0.92600 1.21356 1.13067 0.90126 0.93611 1.16954 0.76758 0.83600 0.84362 1.90744 1.50660 1.35636 1.67763 1.44992 1.64588 1.09918 1.12561 1.21773 1.03160 0.95379 0.81678 0.84926 1.23649 0.93497 0.99737 1.03498 1.21827 0.95931 0.98473 0.95393 1.21534 1.01244 0.97597 0.92248 1.20988 0.92285 0.89889 0.94820 1.44183 1.29009 1.53623 1.06415 1.19473 1.07014 0.96821 1.16109 0.92226 1.25846 1.01938 0.95807 1.00540 1.70119 1.38390 1.09618 1.39619 0.85317 0.80102 0.76833 0.78470 1.21179 1.19626 1.22044 1.20438 0.97902 0.92840 0.83230 1.21491 0.97375 0.96186 0.97959 1.45793 1.44294 1.10295 1.04847 1.22491 1.02185 0.78116 1.02918 1.73108 1.17571 1.18601 1.03345 0.92574 0.90156 0.93645 0.89671 0.91836 0.92702 0.90343 0.80370 0.74912 0.87992 0.86811 0.89848 0.92875 0.96307 0.93071 0.94084 0.92616 0.98240 0.90993 0.93319 0.89067 0.87045 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 71.98 0.66 -1.33 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -1.78 8.79 71.98 0.63 -1.14 16 4 C 0.03 0.57 6.13 43.05 0.26 0.83 16 5 C -0.18 -3.68 9.65 22.66 0.22 -3.46 16 6 C -0.05 -1.29 6.96 40.79 0.28 -1.00 16 7 C 0.60 15.59 7.78 86.58 0.67 16.27 16 8 O -0.57 -17.30 14.27 -4.10 -0.06 -17.36 16 9 N -0.67 -15.89 5.34 -446.31 -2.38 -18.27 16 10 C 0.09 2.18 6.15 44.94 0.28 2.46 16 11 H 0.13 3.51 7.39 -2.38 -0.02 3.50 16 12 C -0.17 -4.08 9.86 30.55 0.30 -3.78 16 13 C -0.11 -3.42 1.94 -52.17 -0.10 -3.52 16 14 C -0.09 -2.78 5.83 30.78 0.18 -2.60 16 15 C 0.15 5.85 6.52 86.43 0.56 6.42 16 16 N -0.61 -29.84 2.93 -699.83 -2.05 -31.89 16 17 C -0.26 -14.34 9.54 84.03 0.80 -13.54 16 18 H 0.06 3.20 7.85 -2.91 -0.02 3.18 16 19 C -0.05 -2.51 5.02 84.86 0.43 -2.08 16 20 N -0.93 -53.79 11.09 21.65 0.24 -53.55 16 21 Si 0.96 44.33 29.57 68.60 2.03 46.36 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.18 8.33 5.32 86.27 0.46 8.78 16 26 C -0.09 -3.13 5.36 30.61 0.16 -2.96 16 27 N -0.27 -6.24 3.75 -356.01 -1.33 -7.57 16 28 C 0.08 1.45 10.85 127.77 1.39 2.84 16 29 N -0.29 -7.03 11.90 -47.50 -0.57 -7.60 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 0.78 7.37 -2.39 -0.02 0.76 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.18 2.84 7.05 -2.91 -0.02 2.82 16 38 H 0.41 8.47 6.15 -92.71 -0.57 7.90 16 39 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 42 H 0.05 1.80 8.14 -2.38 -0.02 1.79 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 45 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 46 H 0.06 2.94 5.99 -2.38 -0.01 2.92 16 47 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 48 H 0.07 2.03 6.75 -2.39 -0.02 2.01 16 49 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 50 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.10 2.00 6.28 -2.39 -0.01 1.98 16 Total: -1.00 -68.08 411.56 3.37 -64.71 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.35 Total: 23.18 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 7.15 Total: 2.00 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -6.09 Total: -118.89 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.06 Total: -17.36 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.08 3.37 -64.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016906985.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.750 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.57 seconds