Wall clock time and date at job start Wed Apr 1 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46787 * 2 1 4 4 C 1.53002 * 109.46775 * 239.99969 * 2 1 3 5 5 C 1.50696 * 109.46853 * 120.00168 * 2 1 3 6 6 N 1.30445 * 125.98733 * 241.11659 * 5 2 1 7 7 N 1.39933 * 108.89987 * 180.02562 * 6 5 2 8 8 H 0.97002 * 125.75812 * 180.02562 * 7 6 5 9 9 C 1.34268 * 108.48995 * 359.74694 * 7 6 5 10 10 C 1.38044 * 107.41369 * 0.39947 * 9 7 6 11 11 C 1.47428 * 126.41173 * 179.87035 * 10 9 7 12 12 O 1.21607 * 120.00086 * 175.97854 * 11 10 9 13 13 N 1.34779 * 120.00108 * 355.97686 * 11 10 9 14 14 C 1.46498 * 119.99973 * 180.27614 * 13 11 10 15 15 H 1.08998 * 115.55161 * 350.30682 * 14 13 11 16 16 C 1.53021 * 117.50394 * 135.99531 * 14 13 11 17 17 C 1.52822 * 117.50119 * 204.62321 * 14 13 11 18 18 C 1.53183 * 117.71422 * 144.90048 * 17 14 13 19 19 C 1.53348 * 108.77128 * 158.89048 * 18 17 14 20 20 N 1.46833 * 108.81646 * 51.30327 * 19 18 17 21 21 C 1.36943 * 120.38313 * 123.12405 * 20 19 18 22 22 H 1.07998 * 119.99627 * 211.97998 * 21 20 19 23 23 C 1.38809 * 120.00024 * 31.97408 * 21 20 19 24 24 N 1.31621 * 119.99672 * 11.98051 * 23 21 20 25 25 Si 1.86797 * 120.00384 * 191.98103 * 23 21 20 26 26 H 1.48500 * 109.47021 * 59.99794 * 25 23 21 27 27 H 1.48494 * 109.47565 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46922 * 300.00214 * 25 23 21 29 29 C 1.46851 * 119.23605 * 303.10288 * 20 19 18 30 30 C 1.53181 * 117.71365 * 0.14003 * 17 14 13 31 31 H 1.09000 * 109.47255 * 309.90605 * 1 2 3 32 32 H 1.09003 * 109.47124 * 69.90920 * 1 2 3 33 33 H 1.09005 * 109.47352 * 189.90787 * 1 2 3 34 34 H 1.09005 * 109.46684 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47673 * 299.99419 * 3 2 1 36 36 H 1.08996 * 109.47087 * 60.00760 * 3 2 1 37 37 H 1.08996 * 109.47183 * 291.05374 * 4 2 1 38 38 H 1.09001 * 109.47188 * 51.05784 * 4 2 1 39 39 H 1.09000 * 109.46454 * 171.05195 * 4 2 1 40 40 H 1.07995 * 126.29163 * 180.24715 * 9 7 6 41 41 H 0.97005 * 119.99847 * 0.02562 * 13 11 10 42 42 H 1.08997 * 117.50690 * 214.95530 * 16 14 13 43 43 H 1.09007 * 117.50264 * 0.02562 * 16 14 13 44 44 H 1.09005 * 109.58357 * 278.67665 * 18 17 14 45 45 H 1.09001 * 109.58765 * 39.09687 * 18 17 14 46 46 H 1.08998 * 109.57648 * 291.50324 * 19 18 17 47 47 H 1.08998 * 109.58027 * 171.10651 * 19 18 17 48 48 H 0.97009 * 119.99556 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.57709 * 297.10681 * 29 20 19 50 50 H 1.08996 * 109.57952 * 176.70515 * 29 20 19 51 51 H 1.09008 * 109.58551 * 320.90075 * 30 17 14 52 52 H 1.09001 * 109.59100 * 81.33248 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 2.7685 -0.1865 2.1712 7 7 3.0275 -1.1621 3.1404 8 1 3.5518 -1.0351 3.9465 9 6 2.4228 -2.3020 2.7693 10 6 1.7889 -2.0609 1.5669 11 6 1.0001 -3.0295 0.7838 12 8 0.4289 -2.6715 -0.2283 13 7 0.9122 -4.3117 1.1896 14 6 0.1334 -5.2756 0.4082 15 1 -0.4759 -4.8510 -0.3896 16 6 0.7520 -6.6543 0.1674 17 6 -0.4165 -6.4984 1.1415 18 6 -1.7827 -7.0362 0.7048 19 6 -1.9045 -8.4973 1.1542 20 7 -1.5761 -8.5823 2.5829 21 6 -2.4758 -9.1101 3.4701 22 1 -2.5131 -8.7419 4.4847 23 6 -3.3398 -10.1183 3.0654 24 7 -3.1450 -10.7301 1.9164 25 14 -4.7791 -10.6069 4.1514 26 1 -5.6666 -9.4337 4.3543 27 1 -5.5443 -11.6987 3.4976 28 1 -4.2707 -11.0761 5.4654 29 6 -0.2716 -8.0951 3.0492 30 6 -0.1169 -6.6258 2.6383 31 1 -0.3634 0.6593 0.7883 32 1 -0.3633 0.3530 -0.9652 33 1 -0.3634 -1.0124 0.1768 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8130 -1.7846 -1.1730 38 1 1.5521 -0.3080 -2.1320 39 1 3.1182 -0.5849 -1.3328 40 1 2.4328 -3.2365 3.3105 41 1 1.3676 -4.5972 1.9972 42 1 0.5493 -7.1370 -0.7886 43 1 1.7383 -6.8444 0.5908 44 1 -2.5730 -6.4446 1.1670 45 1 -1.8680 -6.9793 -0.3804 46 1 -1.2111 -9.1142 0.5827 47 1 -2.9247 -8.8454 0.9926 48 1 -3.7491 -11.4344 1.6334 49 1 0.5230 -8.6870 2.5950 50 1 -0.2172 -8.1786 4.1346 51 1 0.9033 -6.2965 2.8361 52 1 -0.8175 -6.0122 3.2048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016924695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:03 Heat of formation + Delta-G solvation = 77.384090 kcal Electronic energy + Delta-G solvation = -31193.396898 eV Core-core repulsion = 27195.624406 eV Total energy + Delta-G solvation = -3997.772492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.82785 -39.67245 -38.28327 -36.82350 -35.40446 -33.17508 -31.69045 -31.24138 -30.50307 -29.90701 -28.22175 -27.19204 -27.15923 -24.36003 -23.82450 -22.94110 -22.45184 -21.68772 -20.81214 -20.10236 -18.80356 -18.38800 -18.13938 -16.75828 -16.39965 -15.83368 -15.45522 -15.15805 -14.83038 -14.76356 -14.42690 -14.29160 -13.99777 -13.68119 -13.54118 -13.38569 -13.14636 -13.00810 -12.68663 -12.26034 -12.19735 -12.13695 -11.75180 -11.62488 -11.53525 -11.47488 -11.25341 -11.19140 -11.06218 -10.84411 -10.74868 -10.61782 -10.44830 -10.30380 -9.99005 -9.78432 -9.73241 -9.66413 -9.58264 -9.32560 -9.08975 -8.46761 -8.36599 -6.59538 -5.78692 -3.27528 1.22413 1.95799 2.38647 3.17584 3.30461 3.37058 3.42890 3.43676 4.12446 4.22965 4.32164 4.48062 4.70958 4.90788 4.97951 5.00372 5.09295 5.15137 5.16625 5.25698 5.28225 5.40709 5.49312 5.61001 5.64195 5.68310 5.85504 5.86951 5.88192 5.92590 6.02301 6.02645 6.06580 6.08639 6.12931 6.28384 6.28967 6.44020 6.45168 6.49341 6.61058 6.65763 6.70368 6.72452 6.78290 6.85052 6.96035 7.25737 7.39206 7.57775 7.70990 7.78026 8.31325 8.48777 9.22545 9.84267 10.42081 11.28414 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.002262 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.723010 B =12378.037741 C =12741.487649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.018 3.982 3 C -0.137 4.137 4 C -0.147 4.147 5 C 0.150 3.850 6 N -0.296 5.296 7 N -0.463 5.463 8 H 0.443 0.557 9 C 0.104 3.896 10 C -0.283 4.283 11 C 0.591 3.409 12 O -0.527 6.527 13 N -0.693 5.693 14 C 0.074 3.926 15 H 0.134 0.866 16 C -0.183 4.183 17 C -0.097 4.097 18 C -0.106 4.106 19 C 0.174 3.826 20 N -0.589 5.589 21 C -0.254 4.254 22 H 0.062 0.938 23 C 0.005 3.995 24 N -0.903 5.903 25 Si 0.904 3.096 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.150 3.850 30 C -0.096 4.096 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.185 0.815 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.018 0.982 47 H 0.091 0.909 48 H 0.255 0.745 49 H 0.018 0.982 50 H 0.053 0.947 51 H 0.043 0.957 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.320 18.988 -1.227 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.194 4.194 4 C -0.204 4.204 5 C -0.019 4.019 6 N -0.118 5.118 7 N -0.167 5.167 8 H 0.288 0.712 9 C -0.049 4.049 10 C -0.298 4.298 11 C 0.379 3.621 12 O -0.406 6.406 13 N -0.342 5.342 14 C -0.032 4.032 15 H 0.151 0.849 16 C -0.222 4.222 17 C -0.099 4.099 18 C -0.145 4.145 19 C 0.048 3.952 20 N -0.311 5.311 21 C -0.384 4.384 22 H 0.080 0.920 23 C -0.194 4.194 24 N -0.547 5.547 25 Si 0.733 3.267 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 C 0.023 3.977 30 C -0.136 4.136 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.202 0.798 41 H 0.230 0.770 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.071 0.929 51 H 0.061 0.939 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.413 20.151 -1.595 24.259 hybrid contribution -0.422 -1.231 1.318 1.852 sum 12.991 18.920 -0.277 22.952 Atomic orbital electron populations 1.22108 0.92468 1.04779 1.01215 1.18997 0.96406 0.93833 0.89189 1.21838 1.01087 0.94771 1.01748 1.22081 0.99420 1.03749 0.95191 1.22465 0.93182 0.91258 0.94967 1.77179 1.21756 1.12547 1.00281 1.46132 1.41667 1.07800 1.21100 0.71205 1.23178 0.93719 0.92358 0.95692 1.20290 1.13518 0.96411 0.99586 1.17180 0.79745 0.81004 0.84134 1.90638 1.46688 1.77775 1.25488 1.45246 1.52236 1.08501 1.28196 1.21887 0.98728 0.83688 0.98888 0.84852 1.23539 0.97950 0.99011 1.01692 1.21964 0.95787 0.98025 0.94105 1.21886 0.92918 1.01068 0.98639 1.20776 1.01828 0.88967 0.83664 1.43923 1.12171 1.71029 1.04019 1.19119 1.12256 1.12975 0.94086 0.92046 1.25158 1.00747 0.95961 0.97543 1.69969 1.37873 1.24986 1.21893 0.86362 0.82521 0.77838 0.79949 1.20981 1.21601 1.20897 1.20843 0.88917 0.90621 0.97326 1.21619 0.98505 1.00673 0.92785 0.93793 0.92233 0.88892 0.92588 0.92286 0.92510 0.89193 0.92196 0.93805 0.79812 0.76952 0.88367 0.89208 0.92183 0.93022 0.96400 0.89090 0.93531 0.96364 0.92855 0.93856 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.20 37.16 0.30 -1.41 16 2 C 0.02 0.20 0.75 -155.66 -0.12 0.08 16 3 C -0.14 -1.32 7.93 37.16 0.29 -1.03 16 4 C -0.15 -1.64 8.19 37.16 0.30 -1.34 16 5 C 0.15 1.75 5.64 -82.02 -0.46 1.29 16 6 N -0.30 -3.24 11.93 33.89 0.40 -2.84 16 7 N -0.46 -3.47 7.29 30.85 0.22 -3.24 16 8 H 0.44 1.71 8.96 -182.72 -1.64 0.08 16 9 C 0.10 0.79 11.52 -16.56 -0.19 0.60 16 10 C -0.28 -3.11 5.88 -105.07 -0.62 -3.73 16 11 C 0.59 7.48 7.19 -12.52 -0.09 7.39 16 12 O -0.53 -7.83 9.98 5.27 0.05 -7.78 16 13 N -0.69 -8.06 5.34 -54.96 -0.29 -8.35 16 14 C 0.07 1.01 6.13 -68.01 -0.42 0.59 16 15 H 0.13 1.98 7.40 -51.93 -0.38 1.60 16 16 C -0.18 -2.53 9.87 -26.76 -0.26 -2.79 16 17 C -0.10 -1.53 1.94 -154.45 -0.30 -1.83 16 18 C -0.11 -1.96 5.83 -26.46 -0.15 -2.11 16 19 C 0.17 4.01 5.35 -3.68 -0.02 3.99 16 20 N -0.59 -14.24 2.93 -172.27 -0.50 -14.75 16 21 C -0.25 -6.81 9.54 -15.06 -0.14 -6.95 16 22 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 23 C 0.00 0.13 5.01 -17.43 -0.09 0.04 16 24 N -0.90 -25.73 11.09 55.49 0.62 -25.11 16 25 Si 0.90 21.35 29.57 -169.99 -5.03 16.33 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 C 0.15 2.95 6.52 -3.67 -0.02 2.93 16 30 C -0.10 -1.50 5.37 -26.46 -0.14 -1.65 16 31 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 33 H 0.09 1.27 4.72 -51.93 -0.25 1.03 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.18 4.66 -51.93 -0.24 0.94 16 38 H 0.06 0.61 8.05 -51.93 -0.42 0.20 16 39 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.18 0.70 7.47 -52.49 -0.39 0.31 16 41 H 0.40 3.70 6.05 -40.82 -0.25 3.46 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 2.38 5.98 -51.93 -0.31 2.07 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.05 1.03 7.92 -51.93 -0.41 0.62 16 51 H 0.04 0.53 6.75 -51.92 -0.35 0.18 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -31.87 400.11 -10.30 -42.17 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -9.67 Total: 3.48 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.13 Total: -5.93 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.45 Total: -54.29 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.05 Total: -7.78 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.87 -10.30 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016924695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.553 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds