Wall clock time and date at job start Wed Apr 1 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46787 * 2 1 4 4 C 1.53002 * 109.46775 * 239.99969 * 2 1 3 5 5 C 1.50696 * 109.46853 * 120.00168 * 2 1 3 6 6 N 1.30445 * 125.98733 * 241.11659 * 5 2 1 7 7 N 1.39933 * 108.89987 * 180.02562 * 6 5 2 8 8 H 0.97002 * 125.75812 * 180.02562 * 7 6 5 9 9 C 1.34268 * 108.48995 * 359.74694 * 7 6 5 10 10 C 1.38044 * 107.41369 * 0.39947 * 9 7 6 11 11 C 1.47428 * 126.41173 * 179.87035 * 10 9 7 12 12 O 1.21607 * 120.00086 * 175.97854 * 11 10 9 13 13 N 1.34779 * 120.00108 * 355.97686 * 11 10 9 14 14 C 1.46498 * 119.99973 * 180.27614 * 13 11 10 15 15 H 1.08998 * 115.55161 * 350.30682 * 14 13 11 16 16 C 1.53021 * 117.50394 * 135.99531 * 14 13 11 17 17 C 1.52822 * 117.50119 * 204.62321 * 14 13 11 18 18 C 1.53183 * 117.71422 * 144.90048 * 17 14 13 19 19 C 1.53348 * 108.77128 * 158.89048 * 18 17 14 20 20 N 1.46833 * 108.81646 * 51.30327 * 19 18 17 21 21 C 1.36943 * 120.38313 * 123.12405 * 20 19 18 22 22 H 1.07998 * 119.99627 * 211.97998 * 21 20 19 23 23 C 1.38809 * 120.00024 * 31.97408 * 21 20 19 24 24 N 1.31621 * 119.99672 * 11.98051 * 23 21 20 25 25 Si 1.86797 * 120.00384 * 191.98103 * 23 21 20 26 26 H 1.48500 * 109.47021 * 59.99794 * 25 23 21 27 27 H 1.48494 * 109.47565 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46922 * 300.00214 * 25 23 21 29 29 C 1.46851 * 119.23605 * 303.10288 * 20 19 18 30 30 C 1.53181 * 117.71365 * 0.14003 * 17 14 13 31 31 H 1.09000 * 109.47255 * 309.90605 * 1 2 3 32 32 H 1.09003 * 109.47124 * 69.90920 * 1 2 3 33 33 H 1.09005 * 109.47352 * 189.90787 * 1 2 3 34 34 H 1.09005 * 109.46684 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47673 * 299.99419 * 3 2 1 36 36 H 1.08996 * 109.47087 * 60.00760 * 3 2 1 37 37 H 1.08996 * 109.47183 * 291.05374 * 4 2 1 38 38 H 1.09001 * 109.47188 * 51.05784 * 4 2 1 39 39 H 1.09000 * 109.46454 * 171.05195 * 4 2 1 40 40 H 1.07995 * 126.29163 * 180.24715 * 9 7 6 41 41 H 0.97005 * 119.99847 * 0.02562 * 13 11 10 42 42 H 1.08997 * 117.50690 * 214.95530 * 16 14 13 43 43 H 1.09007 * 117.50264 * 0.02562 * 16 14 13 44 44 H 1.09005 * 109.58357 * 278.67665 * 18 17 14 45 45 H 1.09001 * 109.58765 * 39.09687 * 18 17 14 46 46 H 1.08998 * 109.57648 * 291.50324 * 19 18 17 47 47 H 1.08998 * 109.58027 * 171.10651 * 19 18 17 48 48 H 0.97009 * 119.99556 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.57709 * 297.10681 * 29 20 19 50 50 H 1.08996 * 109.57952 * 176.70515 * 29 20 19 51 51 H 1.09008 * 109.58551 * 320.90075 * 30 17 14 52 52 H 1.09001 * 109.59100 * 81.33248 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 2.7685 -0.1865 2.1712 7 7 3.0275 -1.1621 3.1404 8 1 3.5518 -1.0351 3.9465 9 6 2.4228 -2.3020 2.7693 10 6 1.7889 -2.0609 1.5669 11 6 1.0001 -3.0295 0.7838 12 8 0.4289 -2.6715 -0.2283 13 7 0.9122 -4.3117 1.1896 14 6 0.1334 -5.2756 0.4082 15 1 -0.4759 -4.8510 -0.3896 16 6 0.7520 -6.6543 0.1674 17 6 -0.4165 -6.4984 1.1415 18 6 -1.7827 -7.0362 0.7048 19 6 -1.9045 -8.4973 1.1542 20 7 -1.5761 -8.5823 2.5829 21 6 -2.4758 -9.1101 3.4701 22 1 -2.5131 -8.7419 4.4847 23 6 -3.3398 -10.1183 3.0654 24 7 -3.1450 -10.7301 1.9164 25 14 -4.7791 -10.6069 4.1514 26 1 -5.6666 -9.4337 4.3543 27 1 -5.5443 -11.6987 3.4976 28 1 -4.2707 -11.0761 5.4654 29 6 -0.2716 -8.0951 3.0492 30 6 -0.1169 -6.6258 2.6383 31 1 -0.3634 0.6593 0.7883 32 1 -0.3633 0.3530 -0.9652 33 1 -0.3634 -1.0124 0.1768 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.8130 -1.7846 -1.1730 38 1 1.5521 -0.3080 -2.1320 39 1 3.1182 -0.5849 -1.3328 40 1 2.4328 -3.2365 3.3105 41 1 1.3676 -4.5972 1.9972 42 1 0.5493 -7.1370 -0.7886 43 1 1.7383 -6.8444 0.5908 44 1 -2.5730 -6.4446 1.1670 45 1 -1.8680 -6.9793 -0.3804 46 1 -1.2111 -9.1142 0.5827 47 1 -2.9247 -8.8454 0.9926 48 1 -3.7491 -11.4344 1.6334 49 1 0.5230 -8.6870 2.5950 50 1 -0.2172 -8.1786 4.1346 51 1 0.9033 -6.2965 2.8361 52 1 -0.8175 -6.0122 3.2048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016924695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:01 Heat of formation + Delta-G solvation = 57.848075 kcal Electronic energy + Delta-G solvation = -31194.244043 eV Core-core repulsion = 27195.624406 eV Total energy + Delta-G solvation = -3998.619637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.55551 -40.77248 -39.43800 -37.70885 -36.93015 -34.42144 -33.36094 -31.97019 -31.69784 -31.15727 -29.79107 -28.04811 -27.97776 -26.20402 -24.70036 -23.97068 -23.70074 -22.95102 -22.15458 -21.05771 -19.83327 -19.45740 -19.13958 -18.25330 -17.48336 -17.04992 -16.62884 -16.26964 -15.98639 -15.65126 -15.63085 -15.41366 -15.19207 -15.04278 -14.87586 -14.63213 -14.45226 -14.10721 -13.89948 -13.61577 -13.29068 -13.06393 -13.00600 -12.94811 -12.79510 -12.59973 -12.55209 -12.33046 -12.30912 -12.18111 -12.02902 -11.92634 -11.85015 -11.76160 -11.44275 -11.25887 -11.18147 -10.72291 -10.54812 -10.50641 -10.44159 -9.86415 -9.43880 -8.53321 -7.82213 -5.33972 0.56942 1.13570 1.47713 1.50026 1.56267 1.81621 2.23711 2.41306 2.52972 3.07688 3.33403 3.40251 3.69323 3.71714 3.89090 3.95661 4.06119 4.07903 4.10704 4.15442 4.20591 4.36965 4.49037 4.51785 4.59324 4.72621 4.79374 4.84591 4.86050 4.90939 4.99486 4.99706 5.03274 5.05222 5.08055 5.12961 5.15507 5.15979 5.22754 5.26042 5.38131 5.44711 5.49492 5.52795 5.57205 5.60811 5.68777 5.78741 5.84299 6.29496 6.46490 6.52527 6.73613 7.20771 7.41732 7.92629 8.43954 9.21672 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.002262 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.723010 B =12378.037741 C =12741.487649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.141 4.141 5 C 0.135 3.865 6 N -0.319 5.319 7 N -0.448 5.448 8 H 0.460 0.540 9 C 0.131 3.869 10 C -0.315 4.315 11 C 0.590 3.410 12 O -0.555 6.555 13 N -0.684 5.684 14 C 0.095 3.905 15 H 0.121 0.879 16 C -0.172 4.172 17 C -0.117 4.117 18 C -0.094 4.094 19 C 0.182 3.818 20 N -0.609 5.609 21 C -0.261 4.261 22 H 0.064 0.936 23 C -0.050 4.050 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.274 1.274 29 C 0.144 3.856 30 C -0.081 4.081 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.229 0.771 41 H 0.409 0.591 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.046 0.954 45 H 0.064 0.936 46 H -0.002 1.002 47 H 0.052 0.948 48 H 0.249 0.751 49 H 0.017 0.983 50 H 0.054 0.946 51 H 0.088 0.912 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.272 20.429 0.311 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.199 4.199 5 C -0.033 4.033 6 N -0.141 5.141 7 N -0.154 5.154 8 H 0.308 0.692 9 C -0.023 4.023 10 C -0.330 4.330 11 C 0.380 3.620 12 O -0.435 6.435 13 N -0.334 5.334 14 C -0.011 4.011 15 H 0.138 0.862 16 C -0.210 4.210 17 C -0.118 4.118 18 C -0.133 4.133 19 C 0.056 3.944 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.082 0.918 23 C -0.246 4.246 24 N -0.581 5.581 25 Si 0.793 3.207 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.200 1.200 29 C 0.019 3.981 30 C -0.120 4.120 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.245 0.755 41 H 0.247 0.753 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.016 0.984 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.107 0.893 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.415 21.633 -0.009 26.563 hybrid contribution -0.967 -1.659 0.873 2.109 sum 14.448 19.974 0.864 24.666 Atomic orbital electron populations 1.22025 0.93140 1.03433 1.01456 1.19009 0.95888 0.94612 0.89329 1.21766 1.00904 0.93960 1.02094 1.21997 0.99664 1.02586 0.95617 1.22544 0.93644 0.91847 0.95262 1.77119 1.22203 1.13848 1.00950 1.46174 1.41010 1.07240 1.20963 0.69158 1.23743 0.90996 0.93381 0.94184 1.20238 1.15470 0.95991 1.01288 1.17432 0.79435 0.81243 0.83904 1.90635 1.47835 1.78247 1.26831 1.45072 1.51943 1.07861 1.28504 1.21554 0.98125 0.83671 0.97767 0.86163 1.23613 0.97851 0.98629 1.00927 1.21807 0.94848 1.00449 0.94729 1.21623 0.94862 0.97626 0.99228 1.20513 0.98896 0.91478 0.83534 1.44193 1.13757 1.71327 1.03938 1.19460 1.12712 1.12470 0.94555 0.91832 1.25887 1.03329 0.96458 0.98886 1.70136 1.38743 1.25651 1.23556 0.85381 0.79558 0.77214 0.78509 1.20579 1.22177 1.19984 1.21026 0.86586 0.93110 0.97399 1.21443 1.01007 0.97287 0.92293 0.93710 0.91778 0.90920 0.92706 0.91196 0.92870 0.91018 0.91765 0.93426 0.75492 0.75317 0.88558 0.87225 0.93550 0.91779 0.98415 0.92971 0.94192 0.96543 0.92719 0.89326 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.20 71.98 0.59 -2.68 16 2 C 0.01 0.30 0.75 -52.93 -0.04 0.26 16 3 C -0.13 -2.37 7.93 71.98 0.57 -1.80 16 4 C -0.14 -3.08 8.19 71.98 0.59 -2.49 16 5 C 0.14 2.95 5.64 43.51 0.25 3.19 16 6 N -0.32 -6.32 11.93 -46.68 -0.56 -6.87 16 7 N -0.45 -5.17 7.29 -56.31 -0.41 -5.58 16 8 H 0.46 1.81 8.96 -213.43 -1.91 -0.10 16 9 C 0.13 1.46 11.52 84.27 0.97 2.43 16 10 C -0.31 -6.18 5.88 -20.15 -0.12 -6.30 16 11 C 0.59 13.84 7.19 86.66 0.62 14.46 16 12 O -0.55 -16.22 9.98 -4.05 -0.04 -16.26 16 13 N -0.68 -13.79 5.34 -446.05 -2.38 -16.17 16 14 C 0.10 2.40 6.13 44.94 0.28 2.68 16 15 H 0.12 3.45 7.40 -2.39 -0.02 3.43 16 16 C -0.17 -4.29 9.87 30.58 0.30 -3.99 16 17 C -0.12 -3.45 1.94 -52.14 -0.10 -3.55 16 18 C -0.09 -3.50 5.83 30.77 0.18 -3.32 16 19 C 0.18 8.65 5.35 86.43 0.46 9.12 16 20 N -0.61 -29.71 2.93 -698.93 -2.05 -31.75 16 21 C -0.26 -14.14 9.54 84.03 0.80 -13.34 16 22 H 0.06 3.33 7.86 -2.91 -0.02 3.31 16 23 C -0.05 -2.79 5.01 84.86 0.43 -2.36 16 24 N -0.93 -55.07 11.09 21.65 0.24 -54.83 16 25 Si 0.97 44.58 29.57 68.60 2.03 46.60 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 29 C 0.14 5.49 6.52 86.43 0.56 6.05 16 30 C -0.08 -2.31 5.37 30.77 0.17 -2.14 16 31 H 0.04 0.97 8.11 -2.39 -0.02 0.95 16 32 H 0.06 1.34 8.04 -2.39 -0.02 1.32 16 33 H 0.07 2.00 4.72 -2.38 -0.01 1.99 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.87 4.66 -2.39 -0.01 1.86 16 38 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 39 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 40 H 0.23 0.34 7.47 -2.91 -0.02 0.32 16 41 H 0.41 5.74 6.05 -92.70 -0.56 5.18 16 42 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.05 2.87 5.98 -2.39 -0.01 2.86 16 48 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 49 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 51 H 0.09 1.72 6.75 -2.38 -0.02 1.70 16 52 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.40 400.11 1.81 -70.59 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -1.53 Total: 18.06 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 6.51 Total: -3.79 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -5.15 Total: -115.21 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.04 Total: -16.26 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -72.40 1.81 -70.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016924695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.439 kcal (2) G-P(sol) polarization free energy of solvation -72.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds